Date of Document: October 1, 2022
CURRICULUM VITAE

Amit Joshi PhD
Associate Professor
Department of Biomedical Engineering

OFFICE ADDRESS:
Translational and Biomedical Research Center
8701 Watertown Plank Rd
Milwaukee, WI 53226


BIBLIOGRAPHY
Refereed Journal Publications/Original Papers
1. Joshi A, Bangerth W, Hwang K, Rasmussen J, Sevick-Muraca EM. Plane-wave fluorescence tomography with adaptive finite elements. Opt Lett. 2006 Jan 15;31(2):193-5.
2. Joshi A, Bangerth W, Hwang K, Rasmussen JC, Sevick-Muraca EM. Fully adaptive FEM based fluorescence optical tomography from time-dependent measurements with area illumination and detection. Med Phys. 2006 May;33(5):1299-310.
3. Joshi A, Rasmussen JC, Sevick-Muraca EM, Wareing TA, McGhee J. Radiative transport-based frequency-domain fluorescence tomography. Phys Med Biol. 2008 Apr 21;53(8):2069-88. PMCID: PMC3166518
4. Joshi A, Bangerth W, Sevick-Muraca E. Adaptive finite element based tomography for fluorescence optical imaging in tissue. Opt Express. 2004 Nov 01;12(22):5402-17.
5. Joshi A, Bangerth W, Sevick-Muraca EM. Non-contact fluorescence optical tomography with scanning patterned illumination. Opt Express. 2006 Jul 10;14(14):6516-34.
6. Lee JH, Joshi A, Sevick-Muraca EM. Fully adaptive finite element based tomography using tetrahedral dual-meshing for fluorescence enhanced optical imaging in tissue. Opt Express. 2007 May 28;15(11):6955-75.
7. Chen W, Bardhan R, Bartels M, Perez-Torres C, Pautler RG, Halas NJ, Joshi A. A molecularly targeted theranostic probe for ovarian cancer. Mol Cancer Ther. 2010 Apr;9(4):1028-38. PMCID: PMC4134931
8. Bardhan R, Chen W, Bartels M, Perez-Torres C, Botero MF, McAninch RW, Contreras A, Schiff R, Pautler RG, Halas NJ, Joshi A. Tracking of multimodal therapeutic nanocomplexes targeting breast cancer in vivo. Nano Lett. 2010 Dec 08;10(12):4920-8. PMCID: PMC4089981
9. Chen W, Ayala-Orozco C, Biswal NC, Perez-Torres C, Bartels M, Bardhan R, Stinnet G, Liu XD, Ji B, Deorukhkar A, Brown LV, Guha S, Pautler RG, Krishnan S, Halas NJ, Joshi A. Targeting pancreatic cancer with magneto-fluorescent theranostic gold nanoshells. Nanomedicine (Lond). 2014;9(8):1209-22. PMCID: PMC4051872
10. Goodman AM, Cao Y, Urban C, Neumann O, Ayala-Orozco C, Knight MW, Joshi A, Nordlander P, Halas NJ. The surprising in vivo instability of near-IR-absorbing hollow Au-Ag nanoshells. ACS Nano. 2014 Apr 22;8(4):3222-31. PMCID: PMC4004326
11. Urban C, Urban AS, Charron H, Joshi A. Externally modulated theranostic nanoparticles. Transl Cancer Res. 2013 Aug;2(4):292-308. PMCID: PMC4019206
12. Ayala-Orozco C, Urban C, Knight MW, Urban AS, Neumann O, Bishnoi SW, Mukherjee S, Goodman AM, Charron H, Mitchell T, Shea M, Roy R, Nanda S, Schiff R, Halas NJ, Joshi A. Au nanomatryoshkas as efficient near-infrared photothermal transducers for cancer treatment: benchmarking against nanoshells. ACS Nano. 2014 Jun 24;8(6):6372-81. PMCID: PMC4076033
13. Ayala-Orozco C, Urban C, Bishnoi S, Urban A, Charron H, Mitchell T, Shea M, Nanda S, Schiff R, Halas N, Joshi A. Sub-100nm gold nanomatryoshkas improve photo-thermal therapy efficacy in large and highly aggressive triple negative breast tumors. J Control Release. 2014 Oct 10;191:90-97. PMCID: PMC4156921
14. Chapman S, Dobrovolskaia M, Farahani K, Goodwin A, Joshi A, Lee H, Meade T, Pomper M, Ptak K, Rao J, Singh R, Sridhar S, Stern S, Wang A, Weaver JB, Woloschak G, Yang L. Nanoparticles for cancer imaging: The good, the bad, and the promise. Nano Today. 2013 Oct;8(5):454-460. PMCID: PMC4240321
15. Sine J, Urban C, Thayer D, Charron H, Valim N, Tata DB, Schiff R, Blumenthal R, Joshi A, Puri A. Photo activation of HPPH encapsulated in "Pocket" liposomes triggers multiple drug release and tumor cell killing in mouse breast cancer xenografts. Int J Nanomedicine. 2015;10:125-45. PMCID: PMC4278788
16. Fu X, Creighton CJ, Biswal NC, Kumar V, Shea M, Herrera S, Contreras A, Gutierrez C, Wang T, Nanda S, Giuliano M, Morrison G, Nardone A, Karlin KL, Westbrook TF, Heiser LM, Anur P, Spellman P, Guichard SM, Smith PD, Davies BR, Klinowska T, Lee AV, Mills GB, Rimawi MF, Hilsenbeck SG, Gray JW, Joshi A, Osborne CK, Schiff R. Overcoming endocrine resistance due to reduced PTEN levels in estrogen receptor-positive breast cancer by co-targeting mammalian target of rapamycin, protein kinase B, or mitogen-activated protein kinase kinase. Breast Cancer Res. 2014 Sep 11;16(5):430. PMCID: PMC4303114
17. Joshi A, Bangerth W, Sevick-Muraca E. Adaptive finite element based tomography for fluorescence optical imaging in tissue. Opt Express. 2004 Nov 01;12(22):5402-17.
18. Joshi A, Bangerth W, Hwang K, Rasmussen J, Sevick-Muraca EM. Plane-wave fluorescence tomography with adaptive finite elements. Opt Lett. 2006 Jan 15;31(2):193-5.
19. Joshi A, Bangerth W, Sevick-Muraca EM. Non-contact fluorescence optical tomography with scanning patterned illumination. Opt Express. 2006 Jul 10;14(14):6516-34.
20. Rasmussen JC, Joshi A, Pan T, Wareing T, McGhee J, Sevick-Muraca EM. Radiative transport in fluorescence-enhanced frequency domain photon migration. Med Phys. 2006 Dec;33(12):4685-700.
21. Flister MJ, Tsaih SW, Stoddard A, Plasterer C, Jagtap J, Parchur AK, Sharma G, Prisco AR, Lemke A, Murphy D, Al-Gizawiy M, Straza M, Ran S, Geurts AM, Dwinell MR, Greene AS, Bergom C, LaViolette PS, Joshi A. Host genetic modifiers of nonproductive angiogenesis inhibit breast cancer. Breast Cancer Res Treat. 2017 Aug;165(1):53-64. PMCID: PMC6404538
22. Jagtap J, Sharma G, Parchur AK, Gogineni V, Bergom C, White S, Flister MJ, Joshi A. Methods for detecting host genetic modifiers of tumor vascular function using dynamic near-infrared fluorescence imaging. Biomed Opt Express. 2018 Feb 01;9(2):543-556. PMCID: PMC5854057
23. Jagtap J, Sharma G, Parchur AK, Gogineni V, Bergom C, White S, Flister MJ, Joshi A. Erratum: Methods for detecting host genetic modifiers of tumor vascular function using dynamic near-infrared fluorescence imaging: errata. Biomed Opt Express. 2018 06 01;9(6):2543. PMCID: PMC6154194
24. Flister MJ, Joshi A, Bergom C, Rui H. Mapping Mammary Tumor Traits in the Rat. Methods Mol Biol. 2019;2018:249-267. PMCID: PMC9272588
25. Plasterer C, Tsaih SW, Peck AR, Chervoneva I, O'Meara C, Sun Y, Lemke A, Murphy D, Smith J, Ran S, Kovatich AJ, Hooke JA, Shriver CD, Hu H, Mitchell EP, Bergom C, Joshi A, Auer P, Prokop J, Rui H, Flister MJ. Neuronatin is a modifier of estrogen receptor-positive breast cancer incidence and outcome. Breast Cancer Res Treat. 2019 Aug;177(1):77-91.
26. Biswal NC, Fu X, Jagtap JM, Shea MJ, Kumar V, Lords T, Roy R, Schiff R, Joshi A. In vivo longitudinal imaging of RNA interference-induced endocrine therapy resistance in breast cancer. J Biophotonics. 2020 01;13(1):e201900180. PMCID: PMC9229172
27. Zimmerman KC, Sharma G, Parchur AK, Joshi A, Schmidt TG. Experimental investigation of neural network estimator and transfer learning techniques for K-edge spectral CT imaging. Med Phys. 2020 Feb;47(2):541-551. PMCID: PMC7747865
28. Sharma G, Jagtap JM, Parchur AK, Gogineni VR, Ran S, Bergom C, White SB, Flister MJ, Joshi A. Heritable modifiers of the tumor microenvironment influence nanoparticle uptake, distribution and response to photothermal therapy. Theranostics. 2020;10(12):5368-5383. PMCID: PMC7196309
29. Parchur AK , Fang Z , Jagtap JM , Sharma G , Hansen C , Shafiee S , Hu W , Miao QR , Joshi A . NIR-II window tracking of hyperglycemia induced intracerebral hemorrhage in cerebral cavernous malformation deficient mice. Biomater Sci. 2020 Sep 21;8(18):5133-5144. PMCID: PMC9272591
30. Gogineni VR, Maddirela DR, Park W, Jagtap JM, Parchur AK, Sharma G, Ibrahim ES, Joshi A, Larson AC, Kim DH, White SB. Localized and triggered release of oxaliplatin for the treatment of colorectal liver metastasis. J Cancer. 2020;11(23):6982-6991. PMCID: PMC7591990
31. Jagtap J, Audi S, Razeghi-Kondelaji MH, Fish BL, Hansen C, Narayan J, Gao F, Sharma G, Parchur AK, Banerjee A, Bergom C, Medhora M, Joshi A. A rapid dynamic in vivo near-infrared fluorescence imaging assay to track lung vascular permeability after acute radiation injury. Am J Physiol Lung Cell Mol Physiol. 2021 03 01;320(3):L436-L450. PMCID: PMC8294617
32. Sharma M, Rana U, Joshi C, Michalkiewicz T, Afolayan A, Parchur A, Joshi A, Teng RJ, Konduri GG. Decreased Cyclic Guanosine Monophosphate-Protein Kinase G Signaling Impairs Angiogenesis in a Lamb Model of Persistent Pulmonary Hypertension of the Newborn. Am J Respir Cell Mol Biol. 2021 11;65(5):555-567. PMCID: PMC8641848
33. Gogineni VR, Maddirela DR, Park W, Jagtap JM, Parchur AK, Sharma G, Ibrahim ES, Joshi A, Larson AC, Kim DH, White SB. Localized and triggered release of oxaliplatin for the treatment of colorectal liver metastasis Journal of Cancer. 12 October 2020;11(23):6982-6991.
34. Sharma G, Parchur AK, Jagtap JM, Hansen CP, Joshi A. Hybrid Nanostructures in Targeted Drug Delivery Hybrid Nanostructures for Cancer Theranostics. 26 November 2018:1-10.
35. Parchur AK, Jagtap JM, Sharma G, Gogineni V, Hansen CP, White SB, Joshi A. Nanostructures for Externally Triggered Chemo/Thermal Therapies Hybrid Nanostructures for Cancer Theranostics. 26 November 2018:1-10.
36. Valim N, Joshi A. Optically modulated theranostic nanoparticles Frontiers in Nanobiomedical Research. 2018;11:1-23.
37. Valim N, Joshi A. Optically modulated theranostic nanoparticles Cancer Therapeutics and Imaging: Molecular and Cellular Engineering and Nanobiomedicine. 1 January 2017:1-23.
38. Joshi A. Imaging with nanoparticles Cancer Nanotechnology: Principles and Applications in Radiation Oncology. 19 April 2016:63-76.
39. Dowell A, Chen W, Biswal N, Ayala-Orozco C, Giuliano M, Schiff R, Halas NJ, Joshi A. Calibrating the imaging and therapy performance of magneto-fluorescent gold nanoshells for breast cancer Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2012;8233.
40. Bardhan R, Chen W, Perez-Torres C, Bartels M, Huschka RM, Zhao LL, Morosan E, Pautler RG, Joshi A, Halas NJ. Nanoshells with targeted simultaneous enhancement of magnetic and optical imaging and photothermal therapeutic response Advanced Functional Materials. 23 December 2009;19(24):3901-3909.
41. Bangerth W, Joshi A. Adaptive finite element methods for nonlinear inverse problems Proceedings of the ACM Symposium on Applied Computing. 2009:1002-1006.
42. Bartels M, Chen W, Bardhan R, Ke S, Halas NJ, Wareing T, McGhee J, Joshi A. Multimodal optical molecular image reconstruction with frequency domain measurements. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:6655-8.
43. Joshi A, Rasmussen JC, Kwon S, Wareing TA, McGhee J, Sevick-Muraca EM. Multi-modality CT-PET-NIR fluorescence tomography 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI. 2008:1601-1604.
44. Bartels M, Joshi A, Rasmussen JC, Bangerth W, Sevick-Muraca EM. Post image acquisition mitigation of excitation light leakage in patterned illumination based nir fluorescence tomography 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI. 2008:1239-1242.
45. Bangerth W, Joshi A. Adaptive finite element methods for the solution of inverse problems in optical tomography Inverse Problems. 1 June 2008;24(3).
46. Lee JH, Joshi A, Sevick-Muraca EM. Fast intersections on nested tetrahedrons (FINT): An algorithm for adaptive finite element based distributed parameter estimation Journal of Computational Physics. 10 May 2008;227(11):5778-5798.
47. Lee JH, Joshi A, Sevick-Muraca EM. Adaptive technique for fluorescence enhanced optical tomography using tetrahedral dual-mesh 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. 2007:1376-1379.
48. Rasmussen JC, Pan T, Joshi A, Wareing T, McGhee J, Sevick-Muraca EM. Comparison of radiative transport, Monte Carlo, and diffusion forward models for small animal optical tomography 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. 2007:824-827.
49. Bangerth W, Joshi A, Sevick E. Inverse biomedical imaging using separately adapted meshes for parameters and forward model variables 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. 2007:1368-1371.
50. Joshi A, Bangerth W, Sharma R, Rasmussen J, Wang W, Sevick E. Molecular tomographic imaging of lymph nodes with NIR fluorescence 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. 2007:564-567.
51. Lee JH, Joshi A, Sevick-Muraca EM. Fully adaptive finite element based tomography using tetrahedral dual-meshing for fluorescence enhanced optical imaging in tissue Optics Express. 28 May 2007;15(11):6955-6975.
52. Joshi A, Bangerth W, Sevick-Muraca EM. Multiple-experiment and multiple-physics approaches for fluorescence guided molecular tomographic imaging Conference on Lasers and Electro-Optics and 2006 Quantum Electronics and Laser Science Conference, CLEO/QELS 2006. 2006.
53. Hwang K, Pan T, Joshi A, Rasmussen JC, Bangerth W, Sevick-Muraca EM. Influence of excitation light rejection on forward model mismatch in optical tomography. Phys Med Biol. 2006 Nov 21;51(22):5889-902.
54. Joshi A, Bangerth W, Sevick-Muraca EM. Non-contact fluorescence optical tomography with scanning area illumination 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. 2006;2006:582-585.
55. Sahu AK, Joshi A, Sevick-Muraca EM. Effect of random structured backgrounds on hotelling snr in fluorescence imaging systems 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. 2006;2006:586-589.
56. Sahu AK, Joshi A, Kupinski MA, Sevick-Muraca EM. Assessment of a fluorescence-enhanced optical imaging system using the Hotelling observer Optics Express. 2006;14(17):7642-7660.
57. Joshi A, Bangerth W, Sevick-Muraca EM. Non-contact fluorescence optical tomography with scanning patterned illumination Optics Express. 2006;14(14):6516-6534.
58. Sahu AK, Roy R, Joshi A, Sevick-Muraca EM. Evaluation of anatomical structure and non-uniform distribution of imaging agent in near-infrared fluorescence-enhanced optical tomography Optics Express. 12 December 2005;13(25):10182-10199.
59. Sahu AK, Joshi A, Roy R, Sevick-Muraca EM. Simulated anatomical backgrounds for objective assessment of image quality (OAIQ) in optical tomography Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2005;5693:513-520.
60. Bangerth W, Joshi A, Sevick-Muraca EM. Adaptive finite element methods for increased resolution in fluorescence optical tomography Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2005;5693:318-329.
61. Joshi A, Bangerth W, Thompson AB, Sevick-Muraca EM. Experimental fluorescence optical tomography using adaptive finite elements and planar illumination with modulated excitation light Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2005;5693:351-358.
62. Joshi A, Bangerth W, Thompson AB, Sevick-Muraca EM. Adaptive finite element methods for fluorescence enhanced frequency domain optical tomography: Forward imaging problem 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano. 2004;2:1103-1106.
63. Joshi A, Sevick-Muraca EM. Adaptive finite element methods for distributed parameter system identification: Applications in fluorescence enhanced frequency domain optical tomography Proceedings of the American Control Conference. 2004;3:2263-2267.
64. Joshi A, Bangerth W, Sevick-Muraca EM. Adaptive finite element based tomography for fluorescence optical imaging in tissue Optics Express. November 2004;12(22):5402-5417.
65. Kim J, Yang Y, Hong SK, Zielonka J, Dash RK, Audi SH, Kumar SN, Joshi A, Zimmerman MA, Hong JC. Fluorescein clearance kinetics in blood and bile indicates hepatic ischemia-reperfusion injury in rats. Am J Physiol Gastrointest Liver Physiol. 2022 08 01;323(2):G126-G133.
66. Joshi A, Thompson AB, Sevick-Muraca EM, Bangerth W. Adaptive finite element methods for forward modeling in fluorescence enhanced frequency domain optical tomography Optics InfoBase Conference Papers. 2004.
67. Joshi A, Sevick-Muraca EM, Eppstein MJ. A Method to Determine the Optimal Number of Measurements for Three-Dimensional Optical Tomography for A Physiologically Realistic Geometry Optics InfoBase Conference Papers. 2002:128-130.