CURRICULUM VITAE
Brian F. Volkman PhD
Brian F. Volkman PhD
Professor
Department of Biochemistry
Department of Biochemistry
OFFICE ADDRESS: |
Medical Education Building |
8701 Watertown Plank Rd |
Milwaukee, WI 53226 |
EDUCATION: |
1989 B.S., Butler University, Indianapolis, IN |
1989 Chemistry, 1 semester, University of New South Wales, Sydney, Australia |
1994 PhD, University of California at Berkeley, Berkeley, CA |
POSTGRADUATE TRAINING AND FELLOWSHIP APPOINTMENTS: |
1995 - 1997 Postdoctoral Fellow, Biochemistry, University of Wisconsin Madison, Madison, WI |
1997 - 2000 Assistant Scientist, Biochemistry, National Magnetic Resonance Facility, University of Wisconsin Madison, Madison, WI |
2000 Associate Scientist, Biochemistry, National Magnetic Resonance Facility, University of Wisconsin Madison, Madison, WI |
FACULTY APPOINTMENTS: |
2000 - 2005 Assistant Professor, Biochemistry, Medical College of Wisconsin, Milwaukee, WI |
2005 - 2010 Associate Professor (tenured), Biochemistry, Medical College of Wisconsin, Milwaukee, WI |
2010 - Present Professor, Biochemistry, Medical College of Wisconsin, Milwaukee, WI |
RESEARCH ADMINISTRATIVE APPOINTMENTS: |
2001 - Present Director, Biomolecular NMR Facility, Medical College of Wisconsin |
2010 - Present Member, Cancer Center, Medical College of Wisconsin |
2017 - Present Member, Center for Infectious Disease Research, Medical College of Wisconsin |
2017 - Present Director, Program in Chemical Biology, Medical College of Wisconsin |
2019 - Present Member, Center for Immunology, Medical College of Wisconsin |
2020 - Present Co-leader, Cancer Biology Program, Cancer Center, Medical College of Wisconsin |
2020 - Present Director, Structural Genomics Unit, Genomic Sciences and Precision Medicine Center, Medical College of Wisconsin |
2020 - Present Chair, Idea Award Review Committee, Cancer Center, Medical College of Wisconsin |
AWARDS AND HONORS: |
1985 National Merit Scholarship Winner |
1985 - 1989 Presidential Scholar, Butler University |
1985 - 1989 Cislak Fellow, Butler University |
1986 Outstanding Student in Freshman Chemistry, Butler University |
1986 Butler Student Academic Grant, Holcomb Research Institute |
1987 Butler Student Academic Grant, Holcomb Research Institute |
1989 Sigma Xi, Butler University Chapter |
1989 - 1992 Graduate Research Fellowship, U.S. Department of Education |
2014 Excellence Award, Advancing a Healthier Wisconsin (AHW) |
2015 Community of Innovators Award, Medical College of Wisconsin |
2019 Director's Award for Promising Research, MCW Cancer Center |
2020 MERIT Award, NIH/NIAID |
MEMBERSHIPS IN HONORARY AND PROFESSIONAL SOCIETIES: |
Biophysical Society |
American Chemical Society |
Protein Society |
EDITORSHIPS/EDITORIAL BOARDS/JOURNAL REVIEWS: |
Editorship |
2011 - Present PLoS Computational Biology |
2018 - Present International Journal of Molecular Sciences |
Editorial Board |
2001 - 2016 Protein Expression and Purification |
Journal Review |
Antimicrobial Agents and Chemotherapy |
FEBS Letters |
FEBS Journal/ European Journal of Biochemistry |
Journal of Biological Chemistry |
Journal of Biomolecular NMR |
Journal of the American Chemical Society |
Journal of Inorganic Biochemistry |
Journal of Magnetic Resonance |
Journal of Molecular Biology |
Journal of Virology |
Nature Methods |
PNAS |
Science |
Science Signaling |
Structure |
Chemistry and Biology |
Biopolymers |
Analytical Chemistry |
Nature Communications |
Chembiochem |
Journal of Medicinal Chemistry |
ACS Chemical Biology |
Biochemistry |
Arthritis and Rheumatism |
Frontiers in Immunology |
Archives of Biochemistry and Biophysics |
LOCAL/REGIONAL APPOINTED LEADERSHIP AND COMMITTEE POSITIONS: |
1996 - 2006 Consulting, Spectrum Research, L.L.C., Madison, WI |
2005 - 2011 Oversight Committee, Chemical Proteomics Facility at Marquette (CPFM), Department of Chemistry, Marquette University, Milwaukee, WI |
2006 Session Chair, Protein Structure and Function, Great Lakes Regional American Chemical Society Meeting, Milwaukee, WI |
2014 - Present Steering Committee, SE WI BIOnet; A quarterly biotech networking event for southeast Wisconsin |
2014 - Present President and co-founder, Protein Foundry, LLC, Milwaukee, WI |
2015 - Present Scientific Advisory Board, CyteGen Corp, Shorewood, WI |
2016 Local Host, 47th annual Chicago Area NMR Discussion Group, Medical College of Wisconsin, Milwaukee, WI |
2019 Session Chair, Chicago Area NMR Discussion Group, UW-Madison, Madison, WI |
2019 - 2020 Member, Organizing Committee, Chicago Area NMR Discussion Group |
2020 - Present Chief Science Officer and co-founder, XLock Biosciences, LLC, Milwaukee, WI |
NATIONAL ELECTED/APPOINTED LEADERSHIP AND COMMITTEE POSITIONS: |
2001 Temporary Member, Grant Review Panel, NIH MBC-2 study section |
2003 Grant Review Panel, Wellcome Trust Research Fellowship |
2004 Temporary Member, Grant Review Panel, NIH CMI-A study section |
2005 Temporary Member, Grant Review Panel, NIH AMCB study section |
2005 Grant Review Panel, NIH NCF special study section |
2006 Temporary Member, Grant Review Panel, NIH CMI-A study section |
2006 Temporary Member, Grant Review Panel, NIH MSF-B study section |
2007 Temporary Member, Grant Review Panel, NIH AMCB study section |
2008 Temporary Member, Grant Review Panel, NIH CMI-A study section |
2008 Temporary Member, Grant Review Panel, NIH MSF-B study section |
2008 Temporary Member, Grant Review Panel, NIH AMCB study section |
2009 Temporary Member, Grant Review Panel, NIH AMCB study section |
2009 Grant Review Panel, NIH Challenge Grants |
2010 Temporary Member, Grant Review Panel, NIH AMCB study section |
2010 Grant Review Panel, NIH ZRG1 BDA-P special study section |
2010 Grant Review Panel, NIH ZRG1 BCMB-B special study section |
2011 Grant Review Panel, NIH ZRG1 BCMB-R special study section |
2011 Grant Review Panel, NIH ZRG1 IMM-N special study section |
2013 Grant Review Panel, NIH ZRG1 BCMV-H special study section |
2013 Grant Review Panel, NIH MSF-C study section |
2014 - 2018 Full Member, Grant Review Panel, NIH MSF-C study section |
2015 Chair, Grant Review Panel, NIH ZRG1 BCMB-S (40) P41 site visit review panel |
2016 Grant Review Panel, NIH ZRG1 AARR-K (92) special study section |
2020 Grant Review Panel, NIH ZRG1 F04B-T (20) special study section |
RESEARCH GRANTS/AWARDS/CONTRACTS/PROJECTS: | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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INVITED LECTURES/WORKSHOPS/PRESENTATIONS: |
International |
18th International Conference on Magnetic Resonance in Biological Systems, Tokyo, Japan, 1998 |
19th International Conference on Magnetic Resonance in Biological Systems, Florence, Italy, ., 2000 |
Plenary Lecture, 2nd Portuguese-Brazilian NMR Conference, Sintra, Portugal, 2003 |
Invited Lecture, 2nd Asia-Pacific NMR Conference, Kenting, Taiwan, 2007 |
Invited speaker, Gordon Research Conference on Chemotactic Cytokines, Aussois, France, 2008 |
Seminar, University of Montreal, Montreal, Quebec, Canada, 2009 |
Invited speaker, 34th Lorne Conference on Protein Structure and Function, Lorne, VIC, Australia, 2009 |
Invited speaker, “Structure-based inhibition of CXCL12 activity”, Gordon Research Conference on Chemotactic Cytokines, Ciocco, Italy, 2010 |
National |
37th Experimental Nuclear Magnetic Resonance Conference, Pacific Grove, CA, 1996 - Present |
Frontiers of NMR in Molecular Biology, Keystone Symposium, Breckenridge, CO, 1997 - Present |
39th Experimental Nuclear Magnetic Resonance Conference, Pacific Grove, CA, 1998 - Present |
Berea College, Department of Chemistry, Berea, KY, 1998 - Present |
Columbia University, Department of Biochemistry and Biophysics, New York, NY, 1998 - Present |
41st Experimental Nuclear Magnetic Resonance Conference, Pacific Grove, CA, 2000 - Present |
16th Symposium of the Protein Society, San Diego, CA, 2002 - Present |
University of Utah, Department of Biochemistry, Salt Lake City, UT, 2002 - Present |
University of Oregon, Institute for Molecular Biology, Eugene, OR, 2002 - Present |
University of North Carolina, Department of Biochemistry and Biophysics, Chapel Hill, NC, 2004 - Present |
Rockefeller University, Laboratory of Molecular Biophysics, New York, NY, 2004 - Present |
3rd International Conference on Structural Genomics, Washington D.C., 2004 - Present |
Southeast Regional Meeting of the American Chemical Society, Research Triangle Park, NC, 2004 - Present |
LSU Health Sciences Center, Department of Biochemistry and Molecular Biology, New Orleans, LA, 2005 - Present |
University of Oregon, Department of Chemistry, Eugene, OR, 2006 - Present |
2nd annual Computational Biology Conference, National Institute of Environmental Health Sciences, Research Triangle Park, NC, 2006 - Present |
4th Annual Meeting, Great Lakes Regional Center for Excellence in Biodefense and Emerging Infectious Diseases, Hilton Head, SC, 2006 - Present |
21st Annual Symposium of The Protein Society, Boston, MA, 2007 - Present |
Chemokines and Chemokine Receptors, Keystone Symposium, Keystone, CO, 2008 - Present |
6th Annual Meeting, Great Lakes Regional Center for Excellence in Biodefense and Emerging Infectious Diseases, Hilton Head, SC, 2008 - Present |
Plenary lecture, Keystone Symposium - Frontiers of NMR in Biology, Santa Fe, NM, 2009 - Present |
University of Maryland Biotechnology Institute, Rockville, MD, 2009 - Present |
University of California-Riverside, Riverside, CA, 01/13/2010 - Present |
University of South Florida, Tampa, FL, "Controlling cell migration with chemokine gymnastics", 03/12/2010 - Present |
University of Missouri, "Controlling cell migration with chemokine gymnastics", Columbia MO, 04/09/2010 - Present |
6th Annual National RCE Meeting, Las Vegas, NV, "Structural basis for selective lysis of anthrax by phage lysins", 04/13/2010 - Present |
Johnson & Johnson Pharmaceutical R&D, Exton, PA, 09/06/2010 - Present |
Regional |
NMR as a Structural Tool for Macromolecules: Current Status and Future Directions Symposium, Indiana University Purdue University at Indianapolis, Indianapolis, IN, 1994 - Present |
Beyond Protein Structure, Pfizer, Inc.-Beckman Institute Symposium, Champagne-Urbana, IL, 1996 - Present |
Mayo Clinic, Department of Biochemistry and Molecular Biology, Rochester, MN, 1998 - Present |
University of Missouri-Kansas City, School of Biological Sciences, Kansas City, Missouri, 1999 - Present |
Chicago Area NMR Discussion Group Meeting, Searle Company, Skokie, IL, 1999 - Present |
Butler University, Department of Chemistry, Indianapolis, IN, 2000 - Present |
University of Wisconsin, Department of Biochemistry, Madison, WI, 2000 - Present |
University of Wisconsin, School of Pharmacy, Madison, WI, 2000 - Present |
Bruker Midwest NMR Meeting, Milwaukee, WI, 2001 |
University of Iowa, Department of Medicinal and Natural Products Chemistry, Iowa City, IA, 2002 - Present |
University of Illinois-Chicago, Department of Biochemistry, Chicago, IL, 2002 - Present |
Discussion Leader, International Structural Genomics Organization Protein Structure Initiative Workshop on NMR in Structural Genomics, Madison, WI, 2002 - Present |
University of Wisconsin-Green Bay, Department of Chemistry, Green Bay, WI, 2003 - Present |
Wayne State University, Department of Biochemistry, Detroit, MI, 2003 - Present |
Lawrence University, Department of Chemistry, Appleton, WI, 2004 - Present |
Mayo Clinic, Department of Biochemistry and Molecular Biology, Rochester, MN, 2004 - Present |
Rosalind Franklin University, Department of Biochemistry and Molecular Biology, North Chicago, IL, 2005 - Present |
Great Lakes Regional Meeting of the American Chemical Society, Milwaukee, WI, 2006 |
Mayo Clinic, Department of Immunology, Rochester, MN, 2006 - Present |
University of Iowa, Department of Biochemistry, Iowa City, IA, 2007 - Present |
Keynote speaker, GRASP-NMR (Great Plains Annual Symposium on Proteins and Biomolecular NMR), Lawrence, KS. “Novel strategies for chemokine inhibition guided by protein NMR", 09/25/2009 - Present |
University of Illinois-Chicago, Department of Biochemistry, Chicago, IL, 12/02/2009 - Present |
7th Annual Meeting, Great Lakes Regional Center for Excellence in Biodefense and Emerging Infectious Diseases, Chicago, IL, 12/05/2009 - Present |
University of Illinois-Chicago, Chicago Biomedical Consortium, Chicago, IL, 02/01/2010 - Present |
Lawrence University, Department of Chemistry, Appleton, WI, "Structure-based drug discovery to control cell migration", 03/05/2010 - Present |
8th Annual Meeting, Great Lakes Regional Center for Excellence in Biodefense and Emerging Infectious Diseases, Chicago, IL. “A self-unfolding mechanism for autoinhibition of PlyG”, 09/29/2010 - Present |
Teva Innovative Ventures, MG&E Innovation Center, Madison, WI, "Blocking metastasis with novel chemokine inhibitors", 10/13/2010 - Present |
Loyola University Stritch School of Medicine, Department of Pharmacology, Chicago, IL, 12/02/2010 - Present |
Local |
Medical College of Wisconsin, Department of Biochemistry, Milwaukee, WI, 1999 |
Marquette University, Department of Chemistry, Milwaukee, WI, 2005 |
UWM Research Foundation/MCW Office of Technology Development First Look Forum, University Club, Milwaukee, WI, "Blocking metastasis with novel chemokine inhibitors", 05/10/2010 |
IUW-Milwaukee Chemistry and Biochemistry Awards Day, Invited Speaker “Extreme protein dynamism: functional unfolding in the native state”, 05/10/2011 - Present |
COMMITTEE SERVICE: |
Medical College of Wisconsin |
2002 - 2008 Graduate Studies Council Nominating Committee, MCW |
2003 - 2008 Recruiting Committee Chairman, Interdisciplinary Program in Biomedical Sciences, MCW |
2003 - 2008 Graduate Studies Council, MCW |
2003 - 2004 Information Services Advisory Committee, MCW |
2003 - 2008 Recruiting Director, Biochemistry Graduate Program, MCW |
2003 - 2008 Chairman, Graduate Studies Council Nominating Committee, MCW |
2005 - Present Protein and Nucleic Acid Facility Steering Committee, MCW |
2005 MCW Advancing a Healthier Wisconsin Grant Review Panel, MCW |
2006 Faculty Council Ad hoc Committee on Information Technology, MCW |
2006 - Present MCW Core Facilities Committee |
2006 Reviewer, Wisconsin Breast Cancer Showhouse Research Program, MCW |
2006 - 2009 Faculty Council Biochemistry Dept representative |
2008 - Present Reviewer, Wisconsin Breast Cancer Showhouse Research Program, MCW |
2009 Biochemistry Chair Search Committee (Dept. representative), MCW |
2009 ACS Pilot Research Grant Review Committee, MCW |
2010 - 2011 Chair, Biochemistry Structural Biology Search Committee, MCW |
2011 ACS Pilot Research Grant Review Committee, MCW |
MCW TEACHING ACTIVITIES: |
Medical Student Education |
2000 - Present Medical Biochemistry: Case-based discussion preceptor |
Graduate Student Education |
2000 - 2006 Biochemistry of the Cell (Grad 16201): Lecturer |
2002 - Present Protein Chemistry (Biochem 02222): Lecturer and Course Director |
2003 - Present Biophysical Techniques in Biochemistry: Lecturer |
2007 Structural Basis of Macromolecular Interactions: Lecturer |
2007 Research Ethics Discussion Panelist "Experimental Design and Data Collection" |
2010 Biomolecular NMR: Structure and Molecular Recognition: Course director and lecturer |
EXTRAMURAL TEACHING: |
Medical Student Education |
2005 University of Aveiro, Aveiro, Portugal, , Department of Chemistry; Course: Advanced Biomolecular Techniques in Biology/Biochemistry |
Graduate Student Education |
2005 Rosalind Franklin University of Medicine and Science, Graduate program in biochemistry and molecular biology; Course: Physical Biochemistry |
2007 Rosalind Franklin University of Medicine and Science, Graduate program in biochemistry and molecular biology; Course: Physical Biochemistry |
MCW STUDENTS, FACULTY, RESIDENTS AND CLINICAL/RESEARCH FELLOWS MENTORED: |
Medical Students |
2004 - 2005 Petar Duvnjak, Summer lab asst, MCW |
2007 Richard Lennertz, MSTP, MCW |
2008 Katelin Engerer, MSTP, MCW |
2009 Michael Larson, MSTP, MCW |
Graduate Students |
Students Advised |
2001 Jeremy Nichols, Rotation student, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
2002 Christopher Veldkamp, Ryan McAndrew, Rotation student, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
2003 Jason Kowalski, Mariam Hartley, Chris Pawela, John Uselding, Rotation students, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
2004 Tayyiba Khan, Daisy Deng, Rotation students, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
2005 Jessica Weber, Todd Wingers, Rotation students, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
2006 Adam Dubis, Rotation student, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
2007 Joshua Wiener, Aaron Kittel, Dustin Whitney, Rotation student, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
2008 Jamie Wieting, Justin Reitsma, Joshua Ziarek,Andrew Karalewitz, Gabriella Papale, Rotation student, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
2009 Steven Johnson, Rotation student, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
2010 Anthony Getschman, Maxime Heroux, Rotation students, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
2011 Alexandra Chadwick, Rotation student, MCW Interdisciplinary Program in Biomedical Sciences, MCW |
PhD Students Advised |
2002 - 2006 Christopher Veldkamp, Structural Studies of the stromal cell-derived factor-alpha/CXCL12 monomer-dimer equilibrium by multidimensional NMR and fluorescence spectroscopy”, MCW |
2006 - Present Dustin Whitney, MCW |
2007 - Present Joshua Ziarek, MCW |
2008 - Present Jamie Wieting, MCW |
2011 - Present Anthony Getschmann, MCW |
MS Students Advised |
2005 Adam Harder, Non-Thesis degree, MCW |
2007 - 2010 Joshua Weiner, MCW |
Committees |
2006 Christopher Veldkamp, MCW |
2006 Blythe Janowiak, MCW |
2006 Jeremy Nichols, MCW |
2007 Michael Wendt, MCW |
Laura Ristow, Pending, MCW |
David Anderson, Pending, MCW |
Andrew Karalewitz, Pending, MCW |
Tyce Kearl, Pending, MCW |
Gabriella Papale, Pending, MCW |
Patrick Pennington, Pending, MCW |
Clinical/Research Fellows |
2004 - 2007 Robbyn Tuinstra, PhD, Post-Graduate Mentor, MCW |
2006 - 2009 Christopher Veldkamp, PhD, Post-Graduate Mentor, MCW |
EXTRAMURAL STUDENTS, FACULTY, RESIDENTS, AND CLINICAL/RESEARCH FELLOWS MENTORED: |
Undergraduate Students |
2006 - 2007 Margie Li, Summer lab asst, Duke Univ. |
2008 Christopher Woytovich, SPUR program, Columbia Univ |
2008 - 2009 Carol Platt, NIH summer lab asst, Univ. of Chicago |
2009 - 2010 Nathan Murray, NIH summer lab asst, Univ. of Illinois |
Graduate Students |
PhD Students Advised |
2002 E. Sonay Kuloglu, “Structure–Function Studies of the Human Chemokine Lymphotactin and Its Equilibrium Between Two Highly Divergent Conformational States”, Univ. of Wisconsin-Madison; Dept. of Biochemistry |
2004 Merideth Burkhart, SPUR program, Northwestern Univ. PhD program |
2004 - 2005 Tina Liu, Summer lab asst, Harvard Univ. PhD program |
2006 John C. Haugner, SPUR program, Univ. of Minnesota PhD program |
2007 Harihar Basnet, SPUR progra, UCSD |
PhD Committees |
2009 Elizabeth M. Baden, Mayo Graduate School |
2009 Janice Velos, Brandeis University |
Clinical/Research Fellows |
2001 - 2010 Betsy L. Lytle, PhD, Post-Graduate Mentor, Univ. of Rochester |
2001 - 2004 Francis C. Peterson, PhD, Post-Graduate Mentor, Ohio State University |
2002 - 2003 E. Sonay Kuloglu, PhD, Post-Graduate Mentor, Univ. of Wisconsin-Madison |
2003 - 2004 Sujatha Sampath, PhD, Post-Graduate Mentor, IUC, Indore, India |
2006 - Present Robert Tyler, PhD, Post-Graduate Mentor, University of Montana |
2007 - Present Jorge Da Silva Dias, PhD, Post-Graduate Mentor, Universidade Nova de Lisboa |
2007 Norberto De la Cruz, PhD, Post-Graduate Mentor, University of Wisconsin-Madison |
2008 Snjezana Kutlesa, PhD, Post-Graduate Mentor, University of Tubingen |
2010 - Present Tomonori Takekoshi, MD, PhD, Post-Graduate Mentor, University of Tokyo |
2010 Cagdas Dag, Visiting MS Candidate, University of Mugla, Mugla, Turkey |
COMMUNITY SERVICE ACTIVITIES: |
2004 - 2008 Member, Board of Directors, Concord Chamber Orchestra (Milwaukee, WI) |
2005 - 2008 President, Board of Directors, Concord Chamber Orchestra (Milwaukee, WI) |
2009 - Present Treasurer, Little Muskego Lake Protection and Rehabilitation District (Muskego, WI) |
BIBLIOGRAPHY |
Refereed Journal Publications/Original Papers |
1. Ellman, JA, Volkman, BF, Mendel, D, Schultz, PG, and Wemmer, DE, Site-Specific Isotopic Labeling of Proteins for NMR Studies, (1992) J. Am. Chem. Soc. 114, 7959-7961. |
2. Geierstanger, BH, Volkman, BF, Kremer, W., and Wemmer, D.E., Short Peptide Fragment Derived from HMG-I/Y Proteins Bind Specifically to the Minor Groove of DNA (1994) Biochemistry 33, 5347-5355. |
3. Volkman, BF, Nohaile, MJ, Amy, NK, Kustu, S, Wemmer, DE, Three-dimensional Solution Structure of the N-terminal Receiver Domain of NTRC, (1995) Biochemistry 34, 1413. |
4. Volkman, BF and Wemmer, DE, Deletion of a single amino acid changes the folding of an apamin hybrid sequence peptide to that of endothelin (1997) Biopolymers, 41, 451-460. |
5. Lee, AL, Volkman, BF, Robertson, SA, Rudner, DZ, Barbash, D, Cline, TW, Kanaar, R, Rio, DC, Wemmer, DE, Chemical Shift Mapping of the RNA-Binding Interface of the Multiple-RBD Protein Sex-Lethal, (1997) Biochemistry, 36, 14306-14317. |
6. Chivers, PT, Prehoda, KE, Volkman, BF, Kim, B-M, Markley, JL, Raines, RT, Microscopic pKa Values of Escherichia coli Thioredoxin (1997) Biochemistry, 36, 14985-14991. |
7. Volkman, BF, Prantner, AM, Wilkens, SJ, Xia, B, Markley, JL, Assignment of 1H, 13C, and 15N signals of oxidized Clostridium pasteurianum rubredoxin, (1997) J. Biomol. NMR, 10, 409-410 |
8. Prantner, A.M., Volkman, BF, Wilkens, S.J., Xia, B., Markley, JL, Assignment of 1H, 13C, and 15N signals of reduced Clostridium pasteurianum rubredoxin: oxidation state-dependent changes in chemical shifts and relaxation rates (1997) J. Biomol. NMR, 10, 411-412. |
9. Xia, B., Volkman, BF, and Markley, JL Evidence for Oxidation-State-Dependent Conformational Changes in Human Ferredoxin from Multinuclear, Multidimensional NMR Spectroscopy (1998) Biochemistry, 37, 3965-3973. |
10. Geierstanger, B.H., Jamin, M., Volkman, BF and Baldwin, R.L., Protonation behavior of histidine 24 and histidine 119 in forming the pH 4 folding intermediate of apomyoglobin (1998) Biochemistry, 37, 4254-4265. |
11. Alam, S.L., Volkman, BF, Markley, JL and Satterlee, J.D., Detailed NMR Analysis of the Heme-Protein Interactions in Component IV Glycera dibranchiata monomeric hemoglobin-CO (1998) J. Biomol NMR, 11, 119-133. |
12. Volkman, BF, Alam, S.L., Satterlee, J.D. and Markley, JL, Solution Structure and Backbone Dynamics of Component IV-Glycera dibranchiata monomeric hemoglobin-CO, (1998) Biochemistry, 37, 10906-10919. |
13. Chylla, R.A., Volkman, BF and Markley, JL, Practical model fitting approaches to the direct extraction of NMR parameters simultaneously from all dimensions of multidimensional NMR spectra (1998) J. Biomol. NMR, 12, 277-297. |
14. Dangi, B., Blankman, J.I., Miller, C.J., Volkman, BF, and Guiles, RD., Contribution of Backbone Dynamics to Entropy Changes Occurring on Oxidation of Cytochrome b5; Can Redox Linked Changes in Hydrogen Bond Networks Modulate Reduction Potentials? (1998) J. Phys. Chem, 102B, 8201-8208. |
15. Wilkens, S. J., Xia, B., Volkman, BF, Weinhold, F., Markley, JL and Westler, WM., Refutation of the point-dipole approximation for the electron-nuclear relaxation in NMR of paramagnetic proteins: NMR and hybrid density functional calculations in high-spin Fe(III) rubredoxin (1998) J. Phys. Chem, 102B, 8300-8305. |
16. Beger, RD., Marathias, VM., Volkman, BF, and Bolton, PH., Determination of internuclear angles of DNA using paramagnetic alignment (1998) J. Magn. Reson., 135, 256-259. |
17. Volkman, BF, Anderson, ME., Clark, KD., Hayakawa, Y., Strand, MR., and Markley, JL Structure of the Insect Cytokine Peptide PSP-1 from Pseudoplusia includens, (1999) J. Biol. Chem., 274, 4493-4496. |
18. Babu, CR., Volkman, BF, Bullerjahn, GS NMR solution structure of plastocyanin from the photosynthetic prokaryote, Prochlorothrix hollandica, (1999) Biochemistry, 38, 4988-4995. |
19. Volkman, BF, Wilkens, SJ., Lee, AL., Xia, B., Westler, WM., Beger, RD., and Markley, JL Redox-dependent magnetic alignment of Clostridium pasterianum rubredoxin: measurement of magnetic susceptibility anisotropy and prediction of pseudocontact shift contributions, (1999) J. Am. Chem. Soc., 121, 4677-4683. |
20. Kern, D., Volkman, BF, Luginbühl, P., Nohaile, MJ., Kustu, Sand Wemmer, DE. Structure of a transiently phosphorylated "switch" in bacterial signal transduction, (1999) Nature, 402, 894-898. |
21. Lytle, BL., Volkman, BF, Westler, WM., and Wu, JHD., Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy, (2000) Arch. Biochem. Biophys., 379, 237-244. |
22. Baldisseri, DM., Margolis, JW, Omotosho, PA., Volkman, BF, Margolis, F.L., Sequence-specific NMR resonance assignments of the backbone atoms for the olfactory marker protein, OMP, (2000) J. Biomol. NMR, 4, 353-354. |
23. Volkman, BF, Kustu, S., Wemmer, DE., and Kern, D., Two-state allosteric behavior in a single-domain signaling protein, (2001) Science, 291, 2429-2433. |
24. Lytle, BL., Volkman, BF, Westler, WM., and Wu, JHD., Solution structure of a type I dockerin domain, a novel prokaryotic, extracellular calcium-binding domain, (2001) J. Mol. Biol., 307, 745-753. |
25. Clark, KD, Volkman, BF, Thoetkiattikul, H, King, DS., Hayakawa, Y., and Strand, MR., Alanine-scanning Mutagenesis of Plasmatocyte Spreading Peptide Identifies Critical Residues for Biological Activity, (2001) J. Biol. Chem., 276, 18491-18496. |
26. Volkman, BF, Zhang, Q, Debabov, D, Rivera, E, Kresheck, G and Neuhaus, FC, Biosynthesis of D-alanyl-lipoteichoic acid:the tertiary structure of apo-D-alanyl carrier protein, (2001) Biochemistry, 40, 7964-7972. |
27. Clark KD, Volkman, BF, Thoetkiattiku, H, Hayakawa, Y, and Strand, MR, N-terminal residues of plasmatocyte spreading peptide possess specific determinants required for biological activity, (2001) J. Biol. Chem., 276, 37431-37435. |
28. Kuloglu, ES, McCaslin, DR, Kitabwalla, M, Pauza, CD, Markley, JL and Volkman, BF, Monomeric Solution Structure of the Prototypical 'C' Chemokine Lymphotactin, (2001) Biochemistry, 40, 12486-12496. |
29. Tikhonov, I, Kitabwalla, M, Wallace, M, Malkovsky, M, Volkman, BF, and Pauza, CD, Staphylococcal superantigens induce lymphotactin production by human CD4+ and CD8+ T cells, (2001) Cytokine, 16, 73-8. |
30. Skjeldal, L, Gran, L, Sletten, K. and Volkman, BF, Refined Structure and Metal Binding Site of the Kalata B1 Peptide, (2002) Archives of Biochemistry and Biophysics, 399, 142-148. |
31. Kuloglu, ES, Pauza, CD, Markley, JL and Volkman, BF, Conformational rearrangement in the C chemokine lymphotactin, (2002) J. Biol. Chem, 277, 17863-17870. |
32. Goodfellow, BJ, Nunes, S, Rusnak, F, Moura, I, Ascenso, C, Moura, JJG, Volkman, BF, and Markley, JL, Pseudocontact shifts in a mixed metal form of Desulfovibrio gigas desulforedoxin, (2002) Prot. Sci., 11, 2464-2470. |
33. Volkman, BF, Prehoda, KE, Scott, JA, Peterson, FC and Lim, WA, Structure of the N-WASP EVH1 Domain-WIP Complex: Insight into the Molecular Basis of Wiskott-Aldrich Syndrome, (2002) Cell, 111, 565-76. |
34. Zolnai, Z, Lee, PT, Li, J, Chapman, MR, Newman, CS, Phillips, GN Jr, Rayment, I, Ulrich, EL, Volkman, BF and Markley, JL, Project Management System for High-Throughput Protein Structure Determinations: Sesame, (2003) J Struct and Funct Genomics, 4, 11-23. |
35. Gardino, AK, Volkman, BF, Cho, HS, Lee, S-Y, Wemmer, DE, and Kern, D, The NMR Solution Structure of BeF3--Activated Spo0F Reveals the Conformational Switch in a Phosphorelay System, (2003) J Mol Biol 331 245-54. |
36. Cook, CR, Kung, G, Peterson, FC, Volkman, BF and Lei, M, A novel zinc-finger is required for Mcm10 homocomplex assembly, (2003) J Biol Chem 278 36051-8. |
37. Lytle, BL, Peterson, FC, Kjer, KL, Frederick, RO, Zhao, Q, Thao, S, Bingman, C, Johnson, KA, Philllips, GN Jr., Volkman, BF, Structure of the hypothetical protein At3g17210 from Arabidopsis thaliana, (2004) J Biomol NMR 28 397-400. |
38. Peterson, FC, Elgin, ES, Nelson, TJ, Zhu, F, Hoeger, TJ, Linhardt, RJ, Volkman, BF, A glycosaminoglycan recognition element of Lymphotactin essential for in vivo chemokine activity, (2004) J Biol Chem 279 12598-12604. |
39. Peterson, FC, Penkert, RR, Volkman, BF, Prehoda, KE, Cdc42 Regulates the Par-6 PDZ Domain Through an Allosteric CRIB-PDZ Transition (2004) Mol Cell 13 665-676. |
40. Zhao Q, Frederick R, Seder K, Thao S, Sreenath H, Peterson F, Volkman BF, Markley JL, Fox BG, Production in two-liter beverage bottles of proteins for NMR structure determination labeled with either 15N- or 13C-15N (2004) J Struct Funct Genomics 5 87-93. |
41. Bingman, CA, Johnson, KA, Peterson, FC, Frederick, RO, Zhao, Q, Thao, S, Fox, BG, Volkman, BF, Jeon, WB, Smith, DW, Newman, CS, Ulrich, EL, Hegeman, A, Sussman, MR, Markley, JL, Phillips, GN Jr, Structure of the protein from gene At3g17210 of Arabidopsis thaliana (2004) Proteins 57 218-220. |
42. Smith DW, Johnson KA, Bingman CA, Aceti DJ, Blommel PG, Wrobel RL, Frederick RO, Zhao Q, Sreenath H, Fox BG, Volkman BF, Jeon WB, Newman CS, Ulrich EL, Hegeman AD, Kimball T, Thao S, Sussman MR, Markley JL, Phillips GN Jr. Crystal structure of At2g03760, a putative steroid sulfotransferase from Arabidopsis thaliana (2004) Proteins 57 854-857. |
43. Lytle, BL, Peterson, FC, Qiu, S-H, Luo, M, Zhao, Q, Markley, JL and Volkman, BF, Solution structure of a ubiquitin-like domain from tubulin-binding cofactor B, (2004) J Biol Chem 279 46787-93. |
44. Vinarov, DA, Lytle, BL, Peterson, FC, Tyler, E, Volkman, BF and Markley, JL Cell-free protein production and labeling protocol for NMR-based structural proteomics, (2004) Nat Meth 1 149-153. |
45. Skjeldal, L, Peterson, FC, Doreleijers, JF, Moe, LA, Pikus, JD, Westler, WM, Markley, JL, Volkman, BF and Fox, BG, Solution Structure of T4moC, the Rieske Ferredoxin Component of the Toluene 4-Monooxygenase Complex, (2004) J Biol Inorg Chem 9 945-953. |
46. Tyler, RC, Aceti, DJ, Bingman, CA, Cornilescu, CC, Fox, BG, Frederick, RO, Jeon, WB, Lee, MS, Newman, CS, Peterson, FC, Phillips, Jr., GN, Shahan, MN, Singh, S, Song, J, Sreenath, HK, Tyler, EM, Ulrich, EL, Vinarov, DA, Vojtik, FC, Volkman, BF, Wrobel, RL, Zhao, Q and Markley, JL, Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies, (2005) Proteins: Structure, Function and Bioinformatics, 59 633-43. |
47. Veldkamp, CT, Peterson, FC, Pelzek, A and Volkman, BF The monomer-dimer equilibrium of Stromal Cell Derived Factor-1 is altered by pH and phosphate, sulfate, and heparin binding, (2005) Protein Sci, 14 1071-81. |
48. Peterson, FC, Lytle, BL, Tyler, E, Vinarov, DA, Markley, JL and Volkman, BF, Solution structure of thioredoxin h1 from Arabidopsis thaliana, (2005) Protein Sci, 14 2195-2200. |
49. Waltner, JK, Peterson, FC, Lytle, BL, and Volkman BF, Structure of the B3 domain from Arabidopsis thaliana protein At1g16640, (2005) Protein Sci 14 2478-83. |
50. Dias, JS, Macedo, AL, Ferreira, GC, Jeanty, N, Taketani, S, Goodfellow, BJ, Peterson, FC and Volkman, BF, 1H, 15N and 13C resonance assignments of the heme binding protein murine p22HBP, (2005) J Biomol NMR 32 338. |
51. Veldkamp, CT, Seibert, C, Peterson, FC, Sakmar, TP and Volkman, BF Recognition of a CXCR4 sulfotyrosine by the chemokine stromal cell-derived factor-1 (SDF-1CXCL12) (2006) J Mol Biol 359 1400-9. |
52. LytleBL, Peterson, FC, Tyler, EM, Newman, CL, Vinarov, DA, Markley, JL and Volkman, BF Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family, (2006) Acta Crystallograph Sect F 62 490-3. |
53. Janowiak, BE, Hayward, MA, Peterson, FC, Volkman, BF and Griffith, OW, -Glutamylcysteine Synthetase - Glutathione Synthetase: Domain Structure and Identification of Residues Important in Substrate and Glutathione Binding (2006) Biochemistry 45 10461-73. |
54. Peterson, FC, Hayes, PL, Waltner, JK, Heisner, AK, Jensen, DR, Sander, TL and Volkman, BF, Solution structure of the MZF1/ZNF42 SCAN domain homodimer, (2006) J Mol Biol 363 137-47. |
55. Dias, JS, Macedo, AL, Ferreira, GC, Peterson, FC, Volkman, BF, and Goodfellow, BJ, The first structure of a protein from the SOUL/HBP family: murine p22HBP, (2006) J Biol Chem 281 10461-73. |
56. Peterson, FC, Harder, AG, Thorpe, JA, Volkman, BF and Schwarze, SR Structural determinants involved in the regulation of CXCL14/BRAK expression by the 26S proteasome, (2006) J Mol Biol 363 813-822. PMCID: PMC1664593 |
57. Veldkamp, CT, Peterson, FC, Hayes, PL, Mattmiller, J, Haugner, JC, De la Cruz, N, and Volkman, BF, On-column refolding of recombinant chemokines for NMR studies and biological assays, (2007) Protein Expr Purif 52 202-9. |
58. Peterson, FC, Deng, Q, Zettl, M, Prehoda, KE, Lim, WA, Way, M, and Volkman, BF, Multiple independent WIP recognition motifs are required for a functional interaction with N-WASP, (2007) J Biol Chem 282 8446-53. |
59. Tuinstra, R, Elgin, ES, Peterson, FC, and Volkman, BF An engineered second disulfide bond restricts lymphotactin/XCL1 to a chemokine-like conformation with XCR1 agonist activity, (2007) Biochemistry 46 2564-73. |
60. De La Cruz, NB, Peterson, FC, Lytle, BL, and Volkman, BF Solution structure of a membrane-anchored ubiquitin-fold (MUB) protein from Homo sapiens (2007) Protein Sci 16 1479-84. |
61. Phillips Jr., GN. Fox, BG, Markley, JL, Volkman, BF, Bae, E, Bitto, E, Bingman, CA, Frederick, RO, McCoy, JG, Lytle, BL, Pierce, BS, Song, J, and Twigger, SN, Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics (2007) J Struct Func Genomics, 8 73-84. |
62. De la Cruz, NB, Peterson, FC, Volkman, BF, Solution structure of At3g28950 from Arabidopsis thaliana. (2008), Proteins, 72 546-555. |
63. Hayes, PL, Lytle, BL, Volkman, BF, Peterson, FC, Solution structure of ZNF593 from Homo sapiens, (2008) Protein Sci, 17 571-576. |
64. Tuinstra, RL, Peterson, FC, Kutlesa, S, Elgin, ES, Kron, MA and Volkman, BF, Interconversion between two unrelated protein folds in the lymphotactin native states, (2008) Proc Natl Acad Sci USA 105 5057-62. |
65. Baden, EM, Owen, BAL, Peterson, FC, Volkman, BF, Ramirez-Alvarado, M, and Thompson, JR, Altered dimer interface decreases stability in an amyloidogenic protein (2008) J Biol Chem 283 15853-60. |
66. Noll L, Peterson FC, Hayes PL, Volkman BF, Sander T, Heterodimer formation of the myeloid zinc finger 1 SCAN domain and association with promyelocytic leukemia nuclear bodies (2008) Leuk Res 32 1582-92. |
67. Veldkamp, CT, Seibert, C, Peterson, FC, De la Cruz, NB, Haugner, JC, Basnet, H, Sakmar, TP, and Volkman, BF, Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF1/CXCL12 (2008) Science Signaling 1 ra4. |
68. Seibert, C, Veldkamp, CT, Peterson, FC, Chait, B, Volkman, BF, Sakmar, T, Sequential Tyrosine Sulfation of CXCR4 by Tyrosylprotein Sulfotransferases (2008) Biochemistry 47 11251-62. |
69. Lytle, BL, Song, J, de la Cruz, NB, Peterson, FC, Johnson, KA, Bingman, CA, Phillips, Jr., GN and Volkman, BF, Structures of Two Arabidopsis thaliana Major Latex Proteins Represent Novel Helix-Grip Folds, (2009) Proteins 76 237. |
70. Markley JL, Aceti DJ, Bingman CA, Fox BG, Frederick RO, Makino SI, Nichols KW, Phillips GN Jr, Primm JG, Sahu SC, Vojtik FC, Volkman BF, Wrobel RL, Zolnai Z, The Center for Eukaryotic Structural Genomics (2009) J Struct Funct Genomics 10 165-79. |
71. Veldkamp, CT, Ziarek, JJ, Basnet, H, Lennertz, R, Weiner, JJ, Peterson, FC and Volkman, BF, Monomeric structure of the cardioprotective chemokine SDF-1/CXCL12 (2009) Protein Science 76 237-43. |
72. Park SY, Fung P, Nishimura N, Jensen DR, Fujii H, Zhao Y, Lumba S, Santiago J, Rodrigues A, Chow TF, Alfred SE, Bonetta D, Finkelstein R, Provart NJ, Desveaux D, Rodriguez PL, McCourt P, Zhu JK, Schroeder JI, Volkman BF and Cutler SR, Abscisic Acid Inhibits Type 2C Protein Phosphatases via the PYR/PYL Family of START Proteins (2009) Science, 324 1068-71. |
73. Melcher K, Ng L-M, Zhou XE, Soon F-F, Xu Y, Suino-Powell KM, Park S-Y, Weiner JJ, Fujii H, Chinnusamy V, Kovach A, Li J, Wang Y, Li J, Peterson FC, Jensen DR, Yong E-L, Volkman BF, Cutler SR, Zhu J-K, and Xu HE A Gate-Latch-Lock Mechanism for Signal Transduction by Abscisic Acid Receptors (2009) Nature 462 602-8. |
74. Goodfellow BJ, Duarte I, Moura JJG, Volkman BF, Nunes, SG, Moura I, Markley JL, and Macedo AL, An NMR structural study of nickel substituted rubredoxin, (2010) J Biol Inorg Chem 15 409-20. |
75. Jensen DR, Woytovich, C, Li M, Duvnjak P, Cassidy M, Frederick R, Bergeman, L, Peterson, FC, and Volkman BF, Rapid, robotic, small-scale protein production and screening for NMR structure determination, (2010) Protein Science 19 570-8. |
76. Tyler RM, Peterson FC, and Volkman BF, Recognition of an extended PDZ ligand motif in the VE-cadherin C-terminus by the cell polarity protein Par-3, (2010) Biochemistry 49 951-7. |
77. Peterson FC, Baden EM, Owen BA, Volkman BF, and Ramirez-Alvarado M, A single mutation promotes amyloidogenicity through a highly promiscuous dimer interface, (2010) Structure 18 563-70. |
78. Veldkamp CT, Ziarek JJ, Peterson FC, Chen Y and Volkman BF, Targeting SDF-1/CXCL12 with a ligand that prevents activation of CXCR4 through structure based drug design, (2010) J Am Chem Soc 132 7242-3. |
79. Olson LJ, Peterson FC, Castonguay A, Bohnsack RN, Kudo M, Gotschall RR, Canfield WM, Volkman BF, and Dahms, NM, Solution structure of domain 5 of the cation-independent mannose 6-phosphate receptor reveals mode of phosphodiester recognition (2010) Proc Nat Acad Sci USA 107 12493-8. |
80. Peterson FC, Burgie ES, Park S-Y, Jensen DR, Weiner JJ, Bingman CA, Chang CA, Cutler SR, Phillips GN, and Volkman BF, Structural basis for selective activation of ABA receptors (2010) Nature Structural and Molecular Biology 17 1109-13. |
81. Chandran K, McCracken J, Peterson FC, Antholine WE, Volkman BF, and Kalyanaraman B, Oxidation of Histidine Residues in Copper-Zinc Superoxide Dismutase by Bicarbonate-Stimulated Peroxidase and Thiol Oxidase Activities: Pulse EPR and NMR Studies (2010) Biochemistry 49 10616-22. |
82. Sun Q, Tyler RC, Volkman BF, and Julian RR, Dynamic interchanging native states of lymphotactin examined by SNAPP-MS (2011) J Am Soc Mass Spect 22 399-407. |
83. Ziarek JJ, Heroux MS, Veldkamp CT, Peterson FC, Volkman BF. Sulfotyrosine recognition as marker for druggable sites in the extracellular space. Int J Mol Sci. 2011;12(6):3740-56. PMCID: PMC3131587 |
84. Tyler RC, Murray NJ, Peterson FC, Volkman BF. Native-state interconversion of a metamorphic protein requires global unfolding. Biochemistry. 2011 Aug 23;50(33):7077-9. PMCID: PMC3160782 |
85. Johnston CA, Whitney DS, Volkman BF, Doe CQ, Prehoda KE. Conversion of the enzyme guanylate kinase into a mitotic-spindle orienting protein by a single mutation that inhibits GMP-induced closing. Proc Natl Acad Sci U S A. 2011 Nov 01;108(44):E973-8. PMCID: PMC3207680 |
86. Drury LJ, Ziarek JJ, Gravel S, Veldkamp CT, Takekoshi T, Hwang ST, Heveker N, Volkman BF, Dwinell MB. Monomeric and dimeric CXCL12 inhibit metastasis through distinct CXCR4 interactions and signaling pathways. Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):17655-60. PMCID: PMC3203819 |
87. Paddock C, Lytle BL, Peterson FC, Holyst T, Newman PJ, Volkman BF, Newman DK. Residues within a lipid-associated segment of the PECAM-1 cytoplasmic domain are susceptible to inducible, sequential phosphorylation. Blood. 2011 Jun 02;117(22):6012-23. PMCID: PMC3112045 |
88. Peterson FC, Chen D, Lytle BL, Rossi MN, Ahel I, Denu JM, Volkman BF. Orphan macrodomain protein (human C6orf130) is an O-acyl-ADP-ribose deacylase: solution structure and catalytic properties. J Biol Chem. 2011 Oct 14;286(41):35955-35965. PMCID: PMC3195580 |
89. Saini V, Staren DM, Ziarek JJ, Nashaat ZN, Campbell EM, Volkman BF, Marchese A, Majetschak M. The CXC chemokine receptor 4 ligands ubiquitin and stromal cell-derived factor-1α function through distinct receptor interactions. J Biol Chem. 2011 Sep 23;286(38):33466-77. PMCID: PMC3190899 |
90. Mosquna A, Peterson FC, Park SY, Lozano-Juste J, Volkman BF, Cutler SR. Potent and selective activation of abscisic acid receptors in vivo by mutational stabilization of their agonist-bound conformation. Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20838-43. PMCID: PMC3251050 |
91. Whitney DS, Peterson FC, Volkman BF. A conformational switch in the CRIB-PDZ module of Par-6. Structure. 2011 Nov 09;19(11):1711-22. PMCID: PMC3217198 |
92. Mysinger MM, Weiss DR, Ziarek JJ, Gravel S, Doak AK, Karpiak J, Heveker N, Shoichet BK, Volkman BF. Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4. Proc Natl Acad Sci U S A. 2012 Apr 03;109(14):5517-22. PMCID: PMC3325704 |
93. DiCostanzo AC, Thompson JR, Peterson FC, Volkman BF, Ramirez-Alvarado M. Tyrosine residues mediate fibril formation in a dynamic light chain dimer interface. J Biol Chem. 2012 Aug 10;287(33):27997-8006. PMCID: PMC3431636 |
94. Takekoshi T, Ziarek JJ, Volkman BF, Hwang ST. A locked, dimeric CXCL12 variant effectively inhibits pulmonary metastasis of CXCR4-expressing melanoma cells due to enhanced serum stability. Mol Cancer Ther. 2012 Nov;11(11):2516-25. PMCID: PMC3496366 |
95. Elgin ES, Sökmen N, Peterson FC, Volkman BF, Dağ C, Haas AL. E2-binding surface on Uba3 β-grasp domain undergoes a conformational transition. Proteins. 2012 Oct;80(10):2482-7. |
96. Ducett JK, Peterson FC, Hoover LA, Prunuske AJ, Volkman BF, Craig EA. Unfolding of the C-terminal domain of the J-protein Zuo1 releases autoinhibition and activates Pdr1-dependent transcription. J Mol Biol. 2013 Jan 09;425(1):19-31. PMCID: PMC3534791 |
97. Ziarek JJ, Liu Y, Smith E, Zhang G, Peterson FC, Chen J, Yu Y, Chen Y, Volkman BF, Li R. Fragment-based optimization of small molecule CXCL12 inhibitors for antagonizing the CXCL12/CXCR4 interaction. Curr Top Med Chem. 2012;12(24):2727-40. PMCID: PMC3839847 |
98. Ziarek JJ, Volkman BF. NMR in the Analysis of Functional Chemokine Interactions and Drug Discovery. Drug Discov Today Technol. 2012;9(4):e293-e299. PMCID: PMC3499625 |
99. Ziarek JJ, Veldkamp CT, Zhang F, Murray NJ, Kartz GA, Liang X, Su J, Baker JE, Linhardt RJ, Volkman BF. Heparin oligosaccharides inhibit chemokine (CXC motif) ligand 12 (CXCL12) cardioprotection by binding orthogonal to the dimerization interface, promoting oligomerization, and competing with the chemokine (CXC motif) receptor 4 (CXCR4) N terminus. J Biol Chem. 2013 Jan 04;288(1):737-46. PMCID: PMC3537072 |
100. Tyler RC, Wieting JC, Peterson FC, Volkman BF. Electrostatic optimization of the conformational energy landscape in a metamorphic protein. Biochemistry. 2012 Nov 13;51(45):9067-75. PMCID: PMC3567213 |
101. Okamoto M, Peterson FC, Defries A, Park SY, Endo A, Nambara E, Volkman BF, Cutler SR. Activation of dimeric ABA receptors elicits guard cell closure, ABA-regulated gene expression, and drought tolerance. Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):12132-7. PMCID: PMC3718107 |
102. Ziarek JJ, Getschman AE, Butler SJ, Taleski D, Stephens B, Kufareva I, Handel TM, Payne RJ, Volkman BF. Sulfopeptide probes of the CXCR4/CXCL12 interface reveal oligomer-specific contacts and chemokine allostery. ACS Chem Biol. 2013 Sep 20;8(9):1955-63. PMCID: PMC3783652 |
103. Whitney DS, Peterson FC, Kovrigin EL, Volkman BF. Allosteric activation of the Par-6 PDZ via a partial unfolding transition. J Am Chem Soc. 2013 Jun 26;135(25):9377-83. PMCID: PMC3736553 |
104. Tripathi A, Saini V, Marchese A, Volkman BF, Tang WJ, Majetschak M. Modulation of the CXC chemokine receptor 4 agonist activity of ubiquitin through C-terminal protein modification. Biochemistry. 2013 Jun 18;52(24):4184-92. PMCID: PMC4113718 |
105. Anderson DM, Feix JB, Monroe AL, Peterson FC, Volkman BF, Haas AL, Frank DW. Identification of the major ubiquitin-binding domain of the Pseudomonas aeruginosa ExoU A2 phospholipase. J Biol Chem. 2013 Sep 13;288(37):26741-52. PMCID: PMC3772220 |
106. Waas M, Bhattacharya S, Chuppa S, Wu X, Jensen DR, Omasits U, Wollscheid B, Volkman BF, Noon KR, Gundry RL. Combine and conquer: surfactants, solvents, and chaotropes for robust mass spectrometry based analyses of membrane proteins. Anal Chem. 2014 Feb 04;86(3):1551-9. PMCID: PMC4007983 |
107. Verkaar F, van Offenbeek J, van der Lee MMC, van Lith LHCJ, Watts AO, Rops ALWMM, Aguilar DC, Ziarek JJ, van der Vlag J, Handel TM, Volkman BF, Proudfoot AEI, Vischer HF, Zaman GJR, Smit MJ. Chemokine cooperativity is caused by competitive glycosaminoglycan binding. J Immunol. 2014 Apr 15;192(8):3908-3914. PMCID: PMC4198333 |
108. Guzzo C, Fox J, Lin Y, Miao H, Cimbro R, Volkman BF, Fauci AS, Lusso P. The CD8-derived chemokine XCL1/lymphotactin is a conformation-dependent, broad-spectrum inhibitor of HIV-1. PLoS Pathog. 2013;9(12):e1003852. PMCID: PMC3873461 |
109. Tripathi A, Davis JD, Staren DM, Volkman BF, Majetschak M. CXC chemokine receptor 4 signaling upon co-activation with stromal cell-derived factor-1α and ubiquitin. Cytokine. 2014 Feb;65(2):121-5. PMCID: PMC4615604 |
110. Roy I, Veldkamp CT, Volkman BF, Dwinell MB. Chemokines in colitis: microRNA control. Gut. 2014 Aug;63(8):1202-4. PMCID: PMC4608425 |
111. Bach HH 4th, Wong YM, Tripathi A, Nevins AM, Gamelli RL, Volkman BF, Byron KL, Majetschak M. Chemokine (C-X-C motif) receptor 4 and atypical chemokine receptor 3 regulate vascular α₁-adrenergic receptor function. Mol Med. 2014 Oct 13;20(1):435-47. PMCID: PMC4212013 |
112. Harvey SR, Porrini M, Konijnenberg A, Clarke DJ, Tyler RC, Langridge-Smith PR, MacPhee CE, Volkman BF, Barran PE. Dissecting the dynamic conformations of the metamorphic protein lymphotactin. J Phys Chem B. 2014 Oct 30;118(43):12348-59. |
113. Smith EW, Liu Y, Getschman AE, Peterson FC, Ziarek JJ, Li R, Volkman BF, Chen Y. Structural analysis of a novel small molecule ligand bound to the CXCL12 chemokine. J Med Chem. 2014 Nov 26;57(22):9693-9. PMCID: PMC4255719 |
114. Park SY, Peterson FC, Mosquna A, Yao J, Volkman BF, Cutler SR. Agrochemical control of plant water use using engineered abscisic acid receptors. Nature. 2015 Apr 23;520(7548):545-8. |
115. Thomas MA, Buelow BJ, Nevins AM, Jones SE, Peterson FC, Gundry RL, Grayson MH, Volkman BF. Structure-function analysis of CCL28 in the development of post-viral asthma. J Biol Chem. 2015 Feb 13;290(7):4528-36. PMCID: PMC4326855 |
116. Fox JC, Nakayama T, Tyler RC, Sander TL, Yoshie O, Volkman BF. Structural and agonist properties of XCL2, the other member of the C-chemokine subfamily. Cytokine. 2015 Feb;71(2):302-11. PMCID: PMC4297508 |
117. Chadwick AC, Jensen DR, Peterson FC, Volkman BF, Sahoo D. Expression, purification and reconstitution of the C-terminal transmembrane domain of scavenger receptor BI into detergent micelles for NMR analysis. Protein Expr Purif. 2015 Mar;107:35-42. PMCID: PMC4270826 |
118. Korkmaz EN, Volkman BF, Cui Q. Interplay of Electrostatics and Hydrophobic Effects in the Metamorphic Protein Human Lymphotactin. J Phys Chem B. 2015 Jul 30;119(30):9547-58. |
119. Guzzo C, Fox JC, Miao H, Volkman BF, Lusso P. Structural Determinants for the Selective Anti-HIV-1 Activity of the All-β Alternative Conformer of XCL1. J Virol. 2015 Sep;89(17):9061-7. PMCID: PMC4524057 |
120. Maule AF, Wright DP, Weiner JJ, Han L, Peterson FC, Volkman BF, Silvaggi NR, Ulijasz AT. The aspartate-less receiver (ALR) domains: distribution, structure and function. PLoS Pathog. 2015 Apr;11(4):e1004795. PMCID: PMC4395418 |
121. Olson LJ, Jensen DR, Volkman BF, Kim JJ, Peterson FC, Gundry RL, Dahms NM. Bacterial expression of the phosphodiester-binding site of the cation-independent mannose 6-phosphate receptor for crystallographic and NMR studies. Protein Expr Purif. 2015 Jul;111:91-7. PMCID: PMC4417374 |
122. Aceti DJ, Bingman CA, Wrobel RL, Frederick RO, Makino S, Nichols KW, Sahu SC, Bergeman LF, Blommel PG, Cornilescu CC, Gromek KA, Seder KD, Hwang S, Primm JG, Sabat G, Vojtik FC, Volkman BF, Zolnai Z, Phillips GN Jr, Markley JL, Fox BG. Expression platforms for producing eukaryotic proteins: a comparison of E. coli cell-based and wheat germ cell-free synthesis, affinity and solubility tags, and cloning strategies. J Struct Funct Genomics. 2015 Jun;16(2):67-80. PMCID: PMC4430420 |
123. Harvey SR, Porrini M, Tyler RC, MacPhee CE, Volkman BF, Barran PE. Electron capture dissociation and drift tube ion mobility-mass spectrometry coupled with site directed mutations provide insights into the conformational diversity of a metamorphic protein. Phys Chem Chem Phys. 2015 Apr 28;17(16):10538-50. |
124. Tripathi A, Vana PG, Chavan TS, Brueggemann LI, Byron KL, Tarasova NI, Volkman BF, Gaponenko V, Majetschak M. Heteromerization of chemokine (C-X-C motif) receptor 4 with α1A/B-adrenergic receptors controls α1-adrenergic receptor function. Proc Natl Acad Sci U S A. 2015 Mar 31;112(13):E1659-68. PMCID: PMC4386352 |
125. Whitney DS, Volkman BF. Some (dis)assembly required: partial unfolding in the Par-6 allosteric switch. Biophys Rev. 2015 Jun 01;7(2):183-190. PMCID: PMC4519835 |
126. Harvey SR, MacPhee CE, Volkman BF, Barran PE. The association and aggregation of the metamorphic chemokine lymphotactin with fondaparinux: from nm molecular complexes to μm molecular assemblies. Chem Commun (Camb). 2016 Jan 07;52(2):394-7. |
127. Roy I, McAllister DM, Gorse E, Dixon K, Piper CT, Zimmerman NP, Getschman AE, Tsai S, Engle DD, Evans DB, Volkman BF, Kalyanaraman B, Dwinell MB. Pancreatic Cancer Cell Migration and Metastasis Is Regulated by Chemokine-Biased Agonism and Bioenergetic Signaling. Cancer Res. 2015 Sep 01;75(17):3529-42. PMCID: PMC4560104 |
128. Fox JC, Tyler RC, Guzzo C, Tuinstra RL, Peterson FC, Lusso P, Volkman BF. Engineering Metamorphic Chemokine Lymphotactin/XCL1 into the GAG-Binding, HIV-Inhibitory Dimer Conformation. ACS Chem Biol. 2015 Nov 20;10(11):2580-8. PMCID: PMC5028202 |
129. Migliorini E, Thakar D, Kühnle J, Sadir R, Dyer DP, Li Y, Sun C, Volkman BF, Handel TM, Coche-Guerente L, Fernig DG, Lortat-Jacob H, Richter RP. Cytokines and growth factors cross-link heparan sulfate. Open Biol. 2015 Aug;5(8). PMCID: PMC4554917 |
130. Anderson DP, Whitney DS, Hanson-Smith V, Woznica A, Campodonico-Burnett W, Volkman BF, King N, Thornton JW, Prehoda KE. Evolution of an ancient protein function involved in organized multicellularity in animals. Elife. 2016 Jan 07;5:e10147. PMCID: PMC4718807 |
131. Kiermaier E, Moussion C, Veldkamp CT, Gerardy-Schahn R, de Vries I, Williams LG, Chaffee GR, Phillips AJ, Freiberger F, Imre R, Taleski D, Payne RJ, Braun A, Förster R, Mechtler K, Mühlenhoff M, Volkman BF, Sixt M. Polysialylation controls dendritic cell trafficking by regulating chemokine recognition. Science. 2016 Jan 08;351(6269):186-90. PMCID: PMC5583642 |
132. Dyer DP, Salanga CL, Volkman BF, Kawamura T, Handel TM. The dependence of chemokine-glycosaminoglycan interactions on chemokine oligomerization. Glycobiology. 2016 Mar;26(3):312-26. PMCID: PMC4736540 |
133. Veldkamp CT, Koplinski CA, Jensen DR, Peterson FC, Smits KM, Smith BL, Johnson SK, Lettieri C, Buchholz WG, Solheim JC, Volkman BF. Production of Recombinant Chemokines and Validation of Refolding. Methods Enzymol. 2016;570:539-65. PMCID: PMC4811038 |
134. Whitney DS, Peterson FC, Kittell AW, Egner JM, Prehoda KE, Volkman BF. Binding of Crumbs to the Par-6 CRIB-PDZ Module Is Regulated by Cdc42. Biochemistry. 2016 Mar 15;55(10):1455-61. PMCID: PMC5433836 |
135. Fox JC, Tyler RC, Peterson FC, Dyer DP, Zhang F, Linhardt RJ, Handel TM, Volkman BF. Examination of Glycosaminoglycan Binding Sites on the XCL1 Dimer. Biochemistry. 2016 Mar 01;55(8):1214-25. PMCID: PMC4775286 |
136. Anderson DP, Whitney DS, Hanson-Smith V, Woznica A, Campodonico-Burnett W, Volkman BF, King N, Thornton JW, Prehoda KE. Correction: Evolution of an ancient protein function involved in organized multicellularity in animals. Elife. 2016 Jan 21;5:e14311. PMCID: PMC4739758 |
137. Kleist AB, Getschman AE, Ziarek JJ, Nevins AM, Gauthier PA, Chevigné A, Szpakowska M, Volkman BF. New paradigms in chemokine receptor signal transduction: Moving beyond the two-site model. Biochem Pharmacol. 2016 Aug 15;114:53-68. PMCID: PMC5145291 |
138. Smith EW, Nevins AM, Qiao Z, Liu Y, Getschman AE, Vankayala SL, Kemp MT, Peterson FC, Li R, Volkman BF, Chen Y. Structure-Based Identification of Novel Ligands Targeting Multiple Sites within a Chemokine-G-Protein-Coupled-Receptor Interface. J Med Chem. 2016 May 12;59(9):4342-51. PMCID: PMC5600900 |
139. Whitney DS, Peterson FC, Kittell AW, Egner JM, Prehoda KE, Volkman BF. Correction to Binding of Crumbs to the Par-6 CRIB-PDZ Module Is Regulated by Cdc42. Biochemistry. 2016 Apr 05;55(13):2063. PMCID: PMC5531046 |
140. Nevins AM, Subramanian A, Tapia JL, Delgado DP, Tyler RC, Jensen DR, Ouellette AJ, Volkman BF. A Requirement for Metamorphic Interconversion in the Antimicrobial Activity of Chemokine XCL1. Biochemistry. 2016 Jul 12;55(27):3784-93. PMCID: PMC6956654 |
141. Smith EW, Lewandowski EM, Moussouras NA, Kroeck KG, Volkman BF, Veldkamp CT, Chen Y. Crystallographic Structure of Truncated CCL21 and the Putative Sulfotyrosine-Binding Site. Biochemistry. 2016 Oct 11;55(40):5746-5753. PMCID: PMC5498006 |
142. Whitney DS, Volkman BF, Prehoda KE. Evolution of a Protein Interaction Domain Family by Tuning Conformational Flexibility. J Am Chem Soc. 2016 Nov 23;138(46):15150-15156. PMCID: PMC5661941 |
143. Cimbro R, Peterson FC, Liu Q, Guzzo C, Zhang P, Miao H, Van Ryk D, Ambroggio X, Hurt DE, De Gioia L, Volkman BF, Dolan MA, Lusso P. Tyrosine-sulfated V2 peptides inhibit HIV-1 infection via coreceptor mimicry. EBioMedicine. 2016 Aug;10:45-54. PMCID: PMC5006643 |
144. Evans AE, Tripathi A, LaPorte HM, Brueggemann LI, Singh AK, Albee LJ, Byron KL, Tarasova NI, Volkman BF, Cho TY, Gaponenko V, Majetschak M. New Insights into Mechanisms and Functions of Chemokine (C-X-C Motif) Receptor 4 Heteromerization in Vascular Smooth Muscle. Int J Mol Sci. 2016 Jun 20;17(5). PMCID: PMC4926503 |
145. Roy I, Getschman AE, Volkman BF, Dwinell MB. Exploiting agonist biased signaling of chemokines to target cancer. Mol Carcinog. 2017 Mar;56(3):804-813. PMCID: PMC5479419 |
146. Ziarek JJ, Kleist AB, London N, Raveh B, Montpas N, Bonneterre J, St-Onge G, DiCosmo-Ponticello CJ, Koplinski CA, Roy I, Stephens B, Thelen S, Veldkamp CT, Coffman FD, Cohen MC, Dwinell MB, Thelen M, Peterson FC, Heveker N, Volkman BF. Structural basis for chemokine recognition by a G protein-coupled receptor and implications for receptor activation. Sci Signal. 2017 Mar 21;10(471). PMCID: PMC5648539 |
147. Chadwick AC, Jensen DR, Hanson PJ, Lange PT, Proudfoot SC, Peterson FC, Volkman BF, Sahoo D. NMR Structure of the C-Terminal Transmembrane Domain of the HDL Receptor, SR-BI, and a Functionally Relevant Leucine Zipper Motif. Structure. 2017 Mar 07;25(3):446-457. PMCID: PMC5575897 |
148. Eby JM, Abdelkarim H, Albee LJ, Tripathi A, Gao X, Volkman BF, Gaponenko V, Majetschak M. Functional and structural consequences of chemokine (C-X-C motif) receptor 4 activation with cognate and non-cognate agonists. Mol Cell Biochem. 2017 Oct;434(1-2):143-151. PMCID: PMC5660673 |
149. Vaidya AS, Peterson FC, Yarmolinsky D, Merilo E, Verstraeten I, Park SY, Elzinga D, Kaundal A, Helander J, Lozano-Juste J, Otani M, Wu K, Jensen DR, Kollist H, Volkman BF, Cutler SR. A Rationally Designed Agonist Defines Subfamily IIIA Abscisic Acid Receptors As Critical Targets for Manipulating Transpiration. ACS Chem Biol. 2017 Nov 17;12(11):2842-2848. |
150. Moussouras NA, Getschman AE, Lackner ER, Veldkamp CT, Dwinell MB, Volkman BF. Differences in Sulfotyrosine Binding amongst CXCR1 and CXCR2 Chemokine Ligands. Int J Mol Sci. 2017 Sep 03;18(9). PMCID: PMC5618543 |
151. Albee LJ, Eby JM, Tripathi A, LaPorte HM, Gao X, Volkman BF, Gaponenko V, Majetschak M. α<sub>1</sub>-Adrenergic Receptors Function Within Hetero-Oligomeric Complexes With Atypical Chemokine Receptor 3 and Chemokine (C-X-C motif) Receptor 4 in Vascular Smooth Muscle Cells. J Am Heart Assoc. 2017 Aug 17;6(8). PMCID: PMC5586474 |
152. Phillips AJ, Taleski D, Koplinski CA, Getschman AE, Moussouras NA, Richard AM, Peterson FC, Dwinell MB, Volkman BF, Payne RJ, Veldkamp CT. CCR7 Sulfotyrosine Enhances CCL21 Binding. Int J Mol Sci. 2017 Aug 25;18(9). PMCID: PMC5618506 |
153. Hall CL, Lytle BL, Jensen D, Hoff JS, Peterson FC, Volkman BF, Kristich CJ. Structure and Dimerization of IreB, a Negative Regulator of Cephalosporin Resistance in Enterococcus faecalis. J Mol Biol. 2017 Jul 21;429(15):2324-2336. PMCID: PMC5527686 |
154. Szpakowska M, Nevins AM, Meyrath M, Rhainds D, D'huys T, Guité-Vinet F, Dupuis N, Gauthier PA, Counson M, Kleist A, St-Onge G, Hanson J, Schols D, Volkman BF, Heveker N, Chevigné A. Different contributions of chemokine N-terminal features attest to a different ligand binding mode and a bias towards activation of ACKR3/CXCR7 compared with CXCR4 and CXCR3. Br J Pharmacol. 2018 May;175(9):1419-1438. PMCID: PMC5900987 |
155. Egner JM, Jensen DR, Olp MD, Kennedy NW, Volkman BF, Peterson FC, Smith BC, Hill RB. Development and Validation of 2D Difference Intensity Analysis for Chemical Library Screening by Protein-Detected NMR Spectroscopy. Chembiochem. 2018 Mar 02;19(5):448-458. PMCID: PMC5844354 |
156. Cheng YH, Eby JM, LaPorte HM, Volkman BF, Majetschak M. Effects of cognate, non-cognate and synthetic CXCR4 and ACKR3 ligands on human lung endothelial cell barrier function. PLoS One. 2017;12(11):e0187949. PMCID: PMC5681266 |
157. Getschman AE, Imai Y, Larsen O, Peterson FC, Wu X, Rosenkilde MM, Hwang ST, Volkman BF. Protein engineering of the chemokine CCL20 prevents psoriasiform dermatitis in an IL-23-dependent murine model. Proc Natl Acad Sci U S A. 2017 Nov 21;114(47):12460-12465. PMCID: PMC5703275 |
158. Albee LJ, LaPorte HM, Gao X, Eby JM, Cheng YH, Nevins AM, Volkman BF, Gaponenko V, Majetschak M. Identification and functional characterization of arginine vasopressin receptor 1A : atypical chemokine receptor 3 heteromers in vascular smooth muscle. Open Biol. 2018 Jan;8(1). PMCID: PMC5795052 |
159. Thomas MA, He J, Peterson FC, Huppler AR, Volkman BF. The Solution Structure of CCL28 Reveals Structural Lability that Does Not Constrain Antifungal Activity. J Mol Biol. 2018 Sep 14;430(18 Pt B):3266-3282. PMCID: PMC6103841 |
160. Thomas MA, Kleist AB, Volkman BF. Decoding the chemotactic signal. J Leukoc Biol. 2018 Aug;104(2):359-374. PMCID: PMC6099250 |
161. Dishman AF, Volkman BF. Unfolding the Mysteries of Protein Metamorphosis. ACS Chem Biol. 2018 Jun 15;13(6):1438-1446. PMCID: PMC6007232 |
162. Gao X, Albee LJ, Volkman BF, Gaponenko V, Majetschak M. Asymmetrical ligand-induced cross-regulation of chemokine (C-X-C motif) receptor 4 by α<sub>1</sub>-adrenergic receptors at the heteromeric receptor complex. Sci Rep. 2018 Feb 09;8(1):2730. PMCID: PMC5807542 |
163. Riutta SJ, Larsen O, Getschman AE, Rosenkilde MM, Hwang ST, Volkman BF. Mutational analysis of CCL20 reveals flexibility of N-terminal amino acid composition and length. J Leukoc Biol. 2018 Aug;104(2):423-434. |
164. Elmansi AM, Awad ME, Eisa NH, Kondrikov D, Hussein KA, Aguilar-Pérez A, Herberg S, Periyasamy-Thandavan S, Fulzele S, Hamrick MW, McGee-Lawrence ME, Isales CM, Volkman BF, Hill WD. What doesn't kill you makes you stranger: Dipeptidyl peptidase-4 (CD26) proteolysis differentially modulates the activity of many peptide hormones and cytokines generating novel cryptic bioactive ligands. Pharmacol Ther. 2019 Jun;198:90-108. PMCID: PMC7883480 |
165. Elmansi AM, Awad ME, Eisa NH, Kondrikov D, Hussein KA, Aguilar-Pérez A, Herberg S, Periyasamy-Thandavan S, Fulzele S, Hamrick MW, McGee-Lawrence ME, Isales CM, Volkman BF, Hill WD. What doesn't kill you makes you stranger: Dipeptidyl peptidase-4 (CD26) proteolysis differentially modulates the activity of many peptide hormones and cytokines generating novel cryptic bioactive ligands. Pharmacol Ther. 2019 Jun;198:90-108. PMCID: PMC7883480 |
166. Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF. Modeling the complete chemokine-receptor interaction. Methods Cell Biol. 2019;149:289-314. PMCID: PMC6790067 |
167. Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF. Modeling the complete chemokine-receptor interaction. Methods Cell Biol. 2019;149:289-314. PMCID: PMC6790067 |
168. Kleist AB, Peterson F, Tyler RC, Gustavsson M, Handel TM, Volkman BF. Solution NMR spectroscopy of GPCRs: Residue-specific labeling strategies with a focus on <sup>13</sup>C-methyl methionine labeling of the atypical chemokine receptor ACKR3. Methods Cell Biol. 2019;149:259-288. PMCID: PMC6941889 |
169. Hitchinson B, Eby JM, Gao X, Guite-Vinet F, Ziarek JJ, Abdelkarim H, Lee Y, Okamoto Y, Shikano S, Majetschak M, Heveker N, Volkman BF, Tarasova NI, Gaponenko V. Biased antagonism of CXCR4 avoids antagonist tolerance. Sci Signal. 2018 Oct 16;11(552). PMCID: PMC6422681 |
170. Gao X, Abdelkarim H, Albee LJ, Volkman BF, Gaponenko V, Majetschak M. Partial agonist activity of α1-adrenergic receptor antagonists for chemokine (C-X-C motif) receptor 4 and atypical chemokine receptor 3. PLoS One. 2018;13(9):e0204041. PMCID: PMC6152952 |
171. DiCostanzo AC, Thompson JR, Peterson FC, Volkman BF, Ramirez-Alvarado M. Tyrosine residues mediate fibril formation in a dynamic light chain dimer interface (The Journal of Biological Chemistry (2012) 287 (27997-28006)) Journal of Biological Chemistry. 12 October 2012;287(42):35541. |
172. Tuinstra R, Peterson F, Kutlesa S, Elgin ES, Kron M, Volkman B. Interconversion between two unrelated protein folds in the lymphotactin native state Chemtracts. March 2008;21(3):94-95. |
173. Peterson FC, Hayes PL, Waltner JK, Heisner AK, Jensen DR, Sander TL, Volkman BF. Erratum to "Structure of the SCAN Domain from the Tumor Suppressor Protein MZF1" [J. Mol. Biol. 363 (2006) 137-147] (DOI:10.1016/j.jmb.2006.07.063) Journal of Molecular Biology. 9 February 2007;366(1):346. |
174. Dias JS, Macedo AL, Ferreira GC, Peterson FC, Volkman BF, Goodfellow BJ. Erratum:The first structure from the SOUL/HBP family of heme-binding proteins, murine P22HBP (Journal of Biological Chemistry (2006) 281, (31553-31561)) Journal of Biological Chemistry. 15 December 2006;281(50):38966. |
175. Markley JL, Ulrich EL, Westler WM, Volkman BF. Macromolecular Structure Determination by NMR Spectroscopy Structural Bioinformatics. 28 January 2005:89-113. |
176. Tikhonov I, Kitabwalla M, Wallace M, Malkovsky M, Volkman B, Pauza CD. Staphylococcal superantigens induce lymphotactin production by human CD4+ and CD8+ T cells. Cytokine. 2001 Oct 21;16(2):73-8. |
177. Volkman BF, Wilkens SJ, Lee AL, Xia B, Westler WM, Beger R, Markley JL. Redox-dependent magnetic alignment of Clostridium pasteurianum rubredoxin: Measurement of magnetic susceptibility anisotropy and prediction of pseudocontact shift contributions Journal of the American Chemical Society. 19 May 1999;121(19):4677-4683. |
178. Dangi B, Blankman JI, Miller CJ, Volkman BF, Guiles RD. Contribution of backbone dynamics to entropy changes occurring on oxidation of cytochrome b<inf>5</inf>. Can redox linked changes in hydrogen bond networks modulate reduction potentials? Journal of Physical Chemistry B. 15 October 1998;102(42):8201-8208. |
179. Wilkens SJ, Xia B, Volkman BF, Weinhold F, Markley JL, Westler WM. Inadequacies of the point-dipole approximation for describing electron-nuclear interactions in paramagnetic proteins: Hybrid density functional calculations and the analysis of NMR relaxation of high-spin iron(III) rubredoxin Journal of Physical Chemistry B. 15 October 1998;102(42):8300-8305. |
180. Satterlee JD, Volkman BF, Alara SL, Markley JL. The solution structure of co-ligated glycera dibranchiata monomer hemoglobin component iv allows rational functional redesign FASEB Journal. 1997;11(9). |
181. Ellman JA, Volkman BF, Mendel DE, Schultz PG, Wemmer DE. Site-Specific Isotopic Labeling of Proteins for NMR Studies Journal of the American Chemical Society. 1 September 1992;114(20):7959-7961. |
182. Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF. Comparative modeling and docking of chemokine-receptor interactions with Rosetta Biochemical and Biophysical Research Communications. 2020. |
183. Vaidya AS, Helander JDM, Peterson FC, Elzinga D, Dejonghe W, Kaundal A, Park SY, Xing Z, Mega R, Takeuchi J, Khanderahoo B, Bishay S, Volkman BF, Todoroki Y, Okamoto M, Cutler SR. Dynamic control of plant water use using designed ABA receptor agonists. Science. 2019 Oct 25;366(6464). |
184. Fox JC, Thomas MA, Dishman AF, Larsen O, Nakayama T, Yoshie O, Rosenkilde MM, Volkman BF. Structure-function guided modeling of chemokine-GPCR specificity for the chemokine XCL1 and its receptor XCR1. Sci Signal. 2019 Sep 03;12(597). PMCID: PMC6733756 |
185. Elmansi AM, Hussein KA, Herrero SM, Periyasamy-Thandavan S, Aguilar-Pérez A, Kondrikova G, Kondrikov D, Eisa NH, Pierce JL, Kaiser H, Ding KH, Walker AL, Jiang X, Bollag WB, Elsalanty M, Zhong Q, Shi Xm, Su Y, Johnson M, Hunter M, Reitman C, Volkman BF, Hamrick MW, Isales CM, Fulzele S, McGee-Lawrence ME, Hill WD. Age-related increase of kynurenine enhances miR29b-1-5p to decrease both CXCL12 signaling and the epigenetic enzyme Hdac3 in bone marrow stromal cells Bone Reports. June 2020;12. |
186. Dishman AF, Lee MW, de Anda J, Lee EY, He J, Huppler AR, Wong GCL, Volkman BF. Switchable Membrane Remodeling and Antifungal Defense by Metamorphic Chemokine XCL1. ACS Infect Dis. 2020 May 08;6(5):1204-1213. PMCID: PMC7258946 |
187. Moussouras NA, Hjortø GM, Peterson FC, Szpakowska M, Chevigné A, Rosenkilde MM, Volkman BF, Dwinell MB. Structural Features of an Extended C-Terminal Tail Modulate the Function of the Chemokine CCL21. Biochemistry. 2020 Apr 07;59(13):1338-1350. PMCID: PMC7307649 |
188. Gao X, Enten GA, DeSantis AJ, Volkman BF, Gaponenko V, Majetschak M. Characterization of heteromeric complexes between chemokine (C-X-C motif) receptor 4 and α<sub>1</sub>-adrenergic receptors utilizing intermolecular bioluminescence resonance energy transfer assays. Biochem Biophys Res Commun. 2020 Jul 23;528(2):368-375. PMCID: PMC7937191 |
189. Lau S, Feitzinger A, Venkiteswaran G, Wang J, Lewellis SW, Koplinski CA, Peterson FC, Volkman BF, Meier-Schellersheim M, Knaut H. A negative-feedback loop maintains optimal chemokine concentrations for directional cell migration. Nat Cell Biol. 2020 Mar;22(3):266-273. PMCID: PMC7809593 |
190. Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF. Comparative modeling and docking of chemokine-receptor interactions with Rosetta. Biochem Biophys Res Commun. 2020 Jul 23;528(2):389-397. PMCID: PMC7295663 |
191. Babu FS, Liang X, Enten GA, DeSantis AJ, Volkman BF, Gao X, Majetschak M. Natural and engineered chemokine (C-X-C motif) receptor 4 agonists prevent acute respiratory distress syndrome after lung ischemia–reperfusion injury and hemorrhage Scientific Reports. 1 December 2020;10(1). |
192. He J, Thomas MA, de Anda J, Lee MW, Van Why E, Simpson P, Wong GCL, Grayson MH, Volkman BF, Huppler AR. Chemokine CCL28 Is a Potent Therapeutic Agent for Oropharyngeal Candidiasis. Antimicrob Agents Chemother. 2020 Jul 22;64(8). PMCID: PMC7526824 |
193. Elmansi AM, Hussein KA, Herrero SM, Periyasamy-Thandavan S, Aguilar-Pérez A, Kondrikova G, Kondrikov D, Eisa NH, Pierce JL, Kaiser H, Ding KH, Walker AL, Jiang X, Bollag WB, Elsalanty M, Zhong Q, Shi XM, Su Y, Johnson M, Hunter M, Reitman C, Volkman BF, Hamrick MW, Isales CM, Fulzele S, McGee-Lawrence ME, Hill WD. Age-related increase of kynurenine enhances miR29b-1-5p to decrease both CXCL12 signaling and the epigenetic enzyme Hdac3 in bone marrow stromal cells. Bone Rep. 2020 Jun;12:100270. PMCID: PMC7210406 |
194. Dishman AF, Peterson FC, Volkman BF. Specific binding-induced modulation of the XCL1 metamorphic equilibrium Biopolymers. 2020. |
195. Dishman AF, Peterson FC, Volkman BF. Specific binding-induced modulation of the XCL1 metamorphic equilibrium. Biopolymers. 2021 Oct;112(10):e23402. PMCID: PMC8004533 |
196. Wedemeyer MJ, Mahn SA, Getschman AE, Crawford KS, Peterson FC, Marchese A, McCorvy JD, Volkman BF. The chemokine X-factor: Structure-function analysis of the CXC motif at CXCR4 and ACKR3. J Biol Chem. 2020 Oct 02;295(40):13927-13939. PMCID: PMC7535910 |
197. Babu FS, Liang X, Enten GA, DeSantis AJ, Volkman BF, Gao X, Majetschak M. Natural and engineered chemokine (C-X-C motif) receptor 4 agonists prevent acute respiratory distress syndrome after lung ischemia-reperfusion injury and hemorrhage. Sci Rep. 2020 Jul 09;10(1):11359. PMCID: PMC7347544 |
198. Dishman AF, Tyler RC, Fox JC, Kleist AB, Prehoda KE, Babu MM, Peterson FC, Volkman BF. Evolution of fold switching in a metamorphic protein. Science. 2021 Jan 01;371(6524):86-90. PMCID: PMC8017559 |
199. Chi YI, Stodola TJ, De Assuncao TM, Leverence EN, Tripathi S, Dsouza NR, Mathison AJ, Basel DG, Volkman BF, Smith BC, Lomberk G, Zimmermann MT, Urrutia R. Molecular mechanics and dynamic simulations of well-known Kabuki syndrome-associated KDM6A variants reveal putative mechanisms of dysfunction. Orphanet J Rare Dis. 2021 Feb 05;16(1):66. PMCID: PMC7866879 |
200. Ren X, Getschman AE, Hwang S, Volkman BF, Klonisch T, Levin D, Zhao M, Santos S, Liu S, Cheng J, Lin F. Investigations on T cell transmigration in a human skin-on-chip (SoC) model. Lab Chip. 2021 Apr 20;21(8):1527-1539. PMCID: PMC8058301 |
201. Parashar D, Geethadevi A, McAllister D, Ebben J, Peterson FC, Jensen DR, Bishop E, Pradeep S, Volkman BF, Dwinell MB, Chaluvally-Raghavan P, James MA. Targeted biologic inhibition of both tumor cell-intrinsic and intercellular CLPTM1L/CRR9-mediated chemotherapeutic drug resistance. NPJ Precis Oncol. 2021 Mar 02;5(1):16. PMCID: PMC7925570 |
202. Shi Z, Garcia-Melchor E, Wu X, Getschman AE, Nguyen M, Rowland DJ, Wilson M, Sunzini F, Akbar M, Huynh M, Law T, Raychaudhuri SK, Raychaudhuri SP, Volkman BF, Millar NL, Hwang ST. Targeting the CCR6/CCL20 Axis in Entheseal and Cutaneous Inflammation. Arthritis Rheumatol. 2021 Dec;73(12):2271-2281. |
203. Dishman AF, He J, Volkman BF, Huppler AR. Metamorphic Protein Folding Encodes Multiple Anti-<i>Candida</i> Mechanisms in XCL1. Pathogens. 2021 Jun 17;10(6). PMCID: PMC8235156 |
204. Rheinemann L, Thompson T, Mercenne G, Paine EL, Peterson FC, Volkman BF, Alam SL, Alian A, Sundquist WI. Interactions between AMOT PPxY motifs and NEDD4L WW domains function in HIV-1 release. J Biol Chem. 2021 Aug;297(2):100975. PMCID: PMC8368996 |
205. Eisa NH, Sudharsan PT, Herrero SM, Herberg SA, Volkman BF, Aguilar-Pérez A, Kondrikov D, Elmansi AM, Reitman C, Shi X, Fulzele S, McGee-Lawrence ME, Isales CM, Hamrick MW, Johnson MH, Chen J, Hill WD. Age-associated changes in microRNAs affect the differentiation potential of human mesenchymal stem cells: Novel role of miR-29b-1-5p expression. Bone. 2021 Dec;153:116154. PMCID: PMC8935397 |
206. Gutjahr JC, Crawford KS, Jensen DR, Naik P, Peterson FC, Samson GPB, Legler DF, Duchene J, Veldkamp CT, Rot A, Volkman BF. The dimeric form of CXCL12 binds to atypical chemokine receptor 1. Sci Signal. 2021 Aug 17;14(696). PMCID: PMC9015690 |
207. Gutjahr JC, Crawford KS, Jensen DR, Naik P, Peterson FC, Samson GPB, Legler DF, Duchene J, Veldkamp CT, Rot A, Volkman BF. The dimeric form of CXCL12 binds to atypical chemokine receptor 1. Sci Signal. 2021 Aug 17;14(696). PMCID: PMC9015690 |
208. Vaidya AS, Peterson FC, Eckhardt J, Xing Z, Park SY, Dejonghe W, Takeuchi J, Pri-Tal O, Faria J, Elzinga D, Volkman BF, Todoroki Y, Mosquna A, Okamoto M, Cutler SR. Click-to-lead design of a picomolar ABA receptor antagonist with potent activity in vivo. Proc Natl Acad Sci U S A. 2021 Sep 21;118(38). PMCID: PMC8463862 |
209. Stodola TJ, Chi YI, De Assuncao TM, Leverence EN, Tripathi S, Dsouza NR, Mathison AJ, Volkman BF, Smith BC, Lomberk G, Zimmermann MT, Urrutia R. Computational modeling reveals key molecular properties and dynamic behavior of disruptor of telomeric silencing 1-like (DOT1L) and partnering complexes involved in leukemogenesis. Proteins. 2022 Jan;90(1):282-298. PMCID: PMC8671179 |
210. Jørgensen AS, Brandum EP, Mikkelsen JM, Orfin KA, Boilesen DR, Egerod KL, Moussouras NA, Vilhardt F, Kalinski P, Basse P, Chen YH, Yang Z, Dwinell MB, Volkman BF, Veldkamp CT, Holst PJ, Lahl K, Goth CK, Rosenkilde MM, Hjortø GM. The C-terminal peptide of CCL21 drastically augments CCL21 activity through the dendritic cell lymph node homing receptor CCR7 by interaction with the receptor N-terminus. Cell Mol Life Sci. 2021 Nov;78(21-22):6963-6978. PMCID: PMC8558179 |
211. Sprague DJ, Getschman AE, Fenske TG, Volkman BF, Smith BC. Trisubstituted 1,3,5-Triazines: The First Ligands of the sY12-Binding Pocket on Chemokine CXCL12 ACS Medicinal Chemistry Letters. 2021. |
212. Sprague DJ, Getschman AE, Fenske TG, Volkman BF, Smith BC. Trisubstituted 1,3,5-Triazines: The First Ligands of the sY12-Binding Pocket on Chemokine CXCL12. ACS Med Chem Lett. 2021 Nov 11;12(11):1773-1782. PMCID: PMC8592115 |
213. Brandum EP, Jørgensen AS, Calvo MB, Spiess K, Peterson FC, Yang Z, Volkman BF, Veldkamp CT, Rosenkilde MM, Goth CK, Hjortø GM. Selective Boosting of CCR7-Acting Chemokines; Short Peptides Boost Chemokines with Short Basic Tails, Longer Peptides Boost Chemokines with Long Basic Tails International Journal of Molecular Sciences. February-1 2022;23(3). |
214. Elmansi AM, Hussein KA, Herrero SM, Periyasamy-Thandavan S, Aguilar-Pérez A, Kondrikova G, Kondrikov D, Eisa NH, Pierce JL, Kaiser H, Ding KH, Walker AL, Jiang X, Bollag WB, Elsalanty M, Zhong Q, Shi XM, Su Y, Johnson M, Hunter M, Reitman C, Volkman BF, Hamrick MW, Isales CM, Fulzele S, McGee-Lawrence ME, Hill WD. Age-related increase of kynurenine enhances miR29b-1-5p to decrease both CXCL12 signaling and the epigenetic enzyme Hdac3 in bone marrow stromal cells. Bone Rep. 2020 Jun;12:100270. PMCID: PMC7210406 |
215. Elmansi AM, Hussein KA, Herrero SM, Periyasamy-Thandavan S, Aguilar-Pérez A, Kondrikova G, Kondrikov D, Eisa NH, Pierce JL, Kaiser H, Ding KH, Walker AL, Jiang X, Bollag WB, Elsalanty M, Zhong Q, Shi XM, Su Y, Johnson M, Hunter M, Reitman C, Volkman BF, Hamrick MW, Isales CM, Fulzele S, McGee-Lawrence ME, Hill WD. Age-related increase of kynurenine enhances miR29b-1-5p to decrease both CXCL12 signaling and the epigenetic enzyme Hdac3 in bone marrow stromal cells. Bone Rep. 2020 Jun;12:100270. PMCID: PMC7210406 |
216. Lewandowski EM, Kroeck KG, Jacobs LMC, Fenske TG, Witt RN, Hintz AM, Ramsden ER, Zhang X, Peterson F, Volkman BF, Veldkamp CT, Chen Y. Structural Insights into Molecular Recognition by Human Chemokine CCL19. Biochemistry. 2022 Mar 01;61(5):311-318. PMCID: PMC9254573 |
217. Brandum EP, Jørgensen AS, Calvo MB, Spiess K, Peterson FC, Yang Z, Volkman BF, Veldkamp CT, Rosenkilde MM, Goth CK, Hjortø GM. Selective Boosting of CCR7-Acting Chemokines; Short Peptides Boost Chemokines with Short Basic Tails, Longer Peptides Boost Chemokines with Long Basic Tails. Int J Mol Sci. 2022 Jan 26;23(3). PMCID: PMC8836243 |
218. Berg C, Wedemeyer MJ, Melynis M, Schlimgen RR, Hansen LH, Våbenø J, Peterson FC, Volkman BF, Rosenkilde MM, Lüttichau HR. The non-ELR CXC chemokine encoded by human cytomegalovirus UL146 genotype 5 contains a C-terminal β-hairpin and induces neutrophil migration as a selective CXCR2 agonist. PLoS Pathog. 2022 Mar;18(3):e1010355. PMCID: PMC8939814 |
219. Gupta P, Kadamberi IP, Mittal S, Tsaih SW, George J, Kumar S, Vijayan DK, Geethadevi A, Parashar D, Topchyan P, McAlarnen L, Volkman BF, Cui W, Zhang KYJ, Di Vizio D, Chaluvally-Raghavan P, Pradeep S. Tumor Derived Extracellular Vesicles Drive T Cell Exhaustion in Tumor Microenvironment through Sphingosine Mediated Signaling and Impacting Immunotherapy Outcomes in Ovarian Cancer. Adv Sci (Weinh). 2022 May;9(14):e2104452. PMCID: PMC9108620 |
220. Chi YI, Stodola TJ, De Assuncao TM, Leverence EN, Smith BC, Volkman BF, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R. Structural bioinformatics enhances the interpretation of somatic mutations in KDM6A found in human cancers. Comput Struct Biotechnol J. 2022;20:2200-2211. PMCID: PMC9111933 |
221. Chi YI, Stodola TJ, de Assuncao TM, Volkman B, Smith B, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R. Defining the Mutational Landscape That Affects the Histone Demethylase KDM6A/UTX in Human Cancer. FASEB J. 2022 May;36 Suppl 1. |
222. Jorge SD, Chi YI, de Assuncao TM, Mathison AJ, Volkman B, Smith B, Lomberk G, Zimmermann MT, Urrutia R. Integrative Modeling, Molecular Mechanics, and Molecular Dynamics Evaluation of Genomics Variants in KMT2C (MLL3), a Gene Involved in Kleefstra Syndrome Type 2. FASEB J. 2022 May;36 Suppl 1. |
223. Dishman AF, Volkman BF. Design and discovery of metamorphic proteins. Curr Opin Struct Biol. 2022 Jun;74:102380. PMCID: PMC9664977 |
224. Powers HR, Jenjak SE, Volkman BF, Sahoo D. A Tale of Two Scavenger Receptors: Structure-Function Relationships of Purified SR-B1 and CD36. FASEB J. 2022 May;36 Suppl 1. |
225. Schlimgen R, Peterson F, Heukers R, Smit M, McCorvy J, Volkman B. Structural Basis of Nanobody Induced ACKR3 Inhibition FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 1 May 2022;36. |
226. D'Uonnolo G, Reynders N, Meyrath M, Abboud D, Uchański T, Laeremans T, Volkman BF, Janji B, Hanson J, Szpakowska M, Chevigné A. The Extended N-Terminal Domain Confers Atypical Chemokine Receptor Properties to CXCR3-B. Front Immunol. 2022;13:868579. PMCID: PMC9198273 |
227. Beltrán J, Steiner PJ, Bedewitz M, Wei S, Peterson FC, Li Z, Hughes BE, Hartley Z, Robertson NR, Medina-Cucurella AV, Baumer ZT, Leonard AC, Park SY, Volkman BF, Nusinow DA, Zhong W, Wheeldon I, Cutler SR, Whitehead TA. Rapid biosensor development using plant hormone receptors as reprogrammable scaffolds. Nat Biotechnol. 2022 Dec;40(12):1855-1861. PMCID: PMC9750858 |
228. Kleist AB, Jenjak S, Sente A, Laskowski LJ, Szpakowska M, Calkins MM, Anderson EI, McNally LM, Heukers R, Bobkov V, Peterson FC, Thomas MA, Chevign?? A, Smit MJ, McCorvy JD, Babu MM, Volkman BF. Conformational selection guides I?-arrestin recruitment at a biased G proteina??coupled receptor Science. 8 July 2022;377(6602):222-228. |
229. Kleist AB, Jenjak S, Sente A, Laskowski LJ, Szpakowska M, Calkins MM, Anderson EI, McNally LM, Heukers R, Bobkov V, Peterson FC, Thomas MA, Chevigné A, Smit MJ, McCorvy JD, Babu MM, Volkman BF. Conformational selection guides β-arrestin recruitment at a biased G protein-coupled receptor. Science. 2022 Jul 08;377(6602):222-228. PMCID: PMC9574477 |
230. Shishodia S, Nuñez R, Strohmier BP, Bursch KL, Goetz CJ, Olp MD, Jensen DR, Fenske TG, Ordonez-Rubiano SC, Blau ME, Roach MK, Peterson FC, Volkman BF, Dykhuizen EC, Smith BC. Selective and Cell-Active PBRM1 Bromodomain Inhibitors Discovered through NMR Fragment Screening. J Med Chem. 2022 Oct 27;65(20):13714-13735. PMCID: PMC9630929 |
231. Nguyen KTP, Volkman B, Dréau D, Nesmelova IV. A new obligate CXCL4–CXCL12 heterodimer for studying chemokine heterodimer activities and mechanisms Scientific Reports. December 2022;12(1). |
232. Elmansi AM, Eisa NH, Periyasamy-Thandavan S, Kondrikova G, Kondrikov D, Calkins MM, Aguilar-Pérez A, Chen J, Johnson M, Shi XM, Reitman C, McGee-Lawrence ME, Crawford KS, Dwinell MB, Volkman BF, Blumer JB, Luttrell LM, McCorvy JD, Hill WD. DPP4-Truncated CXCL12 Alters CXCR4/ACKR3 Signaling, Osteogenic Cell Differentiation, Migration, and Senescence ACS Pharmacology and Translational Science. 2022. |
233. Elmansi AM, Eisa NH, Periyasamy-Thandavan S, Kondrikova G, Kondrikov D, Calkins MM, Aguilar-Pérez A, Chen J, Johnson M, Shi XM, Reitman C, McGee-Lawrence ME, Crawford KS, Dwinell MB, Volkman BF, Blumer JB, Luttrell LM, McCorvy JD, Hill WD. DPP4-Truncated CXCL12 Alters CXCR4/ACKR3 Signaling, Osteogenic Cell Differentiation, Migration, and Senescence. ACS Pharmacol Transl Sci. 2023 Jan 13;6(1):22-39. PMCID: PMC9844133 |
234. Haver HN, Wedemeyer M, Butcher E, Peterson FC, Volkman BF, Scaglione KM. Mechanistic Insight into the Suppression of Polyglutamine Aggregation by SRCP1. ACS Chem Biol. 2023 Mar 17;18(3):549-560. PMCID: PMC10023506 |
235. Zhou AL, Jensen DR, Peterson FC, Thomas MA, Schlimgen RR, Dwinell MB, Smith BC, Volkman BF. Fragment-based drug discovery of small molecule ligands for the human chemokine CCL28. SLAS Discov. 2023 Jun;28(4):163-169. PMCID: PMC10339762 |
236. Kim DE, Jensen DR, Feldman D, Tischer D, Saleem A, Chow CM, Li X, Carter L, Milles L, Nguyen H, Kang A, Bera AK, Peterson FC, Volkman BF, Ovchinnikov S, Baker D. De novo design of small beta barrel proteins. Proc Natl Acad Sci U S A. 2023 Mar 14;120(11):e2207974120. PMCID: PMC10089152 |
237. Wu X, Clarke WR, Koplinski CA, Peterson FC, Dwinell MB, Wei G, Chao E, Huynh M, Yamada D, Volkman BF, Hwang ST. A modified ELISA assay differentiates CCL20 locked dimers from wild-type monomers. J Immunol Methods. 2023 Apr;515:113453. PMCID: PMC10715733 |
238. Shi ZR, Mabuchi T, Riutta SJ, Wu X, Peterson FC, Volkman BF, Hwang ST. The Chemokine, CCL20, and Its Receptor, CCR6, in the Pathogenesis and Treatment of Psoriasis and Psoriatic Arthritis Journal of Psoriasis and Psoriatic Arthritis. 2023. |
239. Crawford KS, Volkman BF. Prospects for targeting ACKR1 in cancer and other diseases Frontiers in Immunology. 2023;14. |
240. Crawford KS, Volkman BF. Prospects for targeting ACKR1 in cancer and other diseases. Front Immunol. 2023;14:1111960. PMCID: PMC10050359 |
241. Ratnasinghe BD, Haque N, Wagenknecht JB, Jensen DR, Esparza GV, Leverence EN, De Assuncao TM, Mathison AJ, Lomberk G, Smith BC, Volkman BF, Urrutia R, Zimmermann MT. Beyond Structural Bioinformatics for Genomics with Dynamics Characterization of an Expanded KRAS Mutational Landscape. bioRxiv. 2023 Apr 28. PMCID: PMC10189839 |
242. Dishman AF, Volkman BF. Metamorphic protein folding as evolutionary adaptation. Trends Biochem Sci. 2023 Aug;48(8):665-672. PMCID: PMC10526677 |
243. Kerber PJ, Nuñez R, Jensen DR, Zhou AL, Peterson FC, Hill RB, Volkman BF, Smith BC. Fragment-based screening by protein-detected NMR spectroscopy Methods in Enzymology. 2023. |
244. Praetorius F, Leung PJY, Tessmer MH, Broerman A, Demakis C, Dishman AF, Pillai A, Idris A, Juergens D, Dauparas J, Li X, Levine PM, Lamb M, Ballard RK, Gerben SR, Nguyen H, Kang A, Sankaran B, Bera AK, Volkman BF, Nivala J, Stoll S, Baker D. Design of stimulus-responsive two-state hinge proteins. Science. 2023 Aug 18;381(6659):754-760. PMCID: PMC10697137 |
245. Powers HR, Jenjak SE, Volkman BF, Sahoo D. Development and validation of a purification system for functional full-length human SR-B1 and CD36. J Biol Chem. 2023 Oct;299(10):105187. PMCID: PMC10509710 |
246. Chi YI, Jorge SD, Jensen DR, Smith BC, Volkman BF, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R. A Multi-Layered Computational Structural Genomics Approach Enhances Domain-Specific Interpretation of Kleefstra Syndrome Variants in EHMT1. bioRxiv. 2023 Sep 07. PMCID: PMC10541560 |
247. Jorge SD, Chi YI, Mazaba JL, Haque N, Wagenknecht J, Smith BC, Volkman BF, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R. Deep computational phenotyping of genomic variants impacting the SET domain of KMT2C reveal molecular mechanisms for their dysfunction. Front Genet. 2023;14:1291307. PMCID: PMC10715303 |
248. Park SY, Qiu J, Wei S, Peterson FC, Beltrán J, Medina-Cucurella AV, Vaidya AS, Xing Z, Volkman BF, Nusinow DA, Whitehead TA, Wheeldon I, Cutler SR. An orthogonalized PYR1-based CID module with reprogrammable ligand-binding specificity. Nat Chem Biol. 2024 Jan;20(1):103-110. PMCID: PMC10746540 |
249. Ratnasinghe BD, Haque N, Wagenknecht JB, Jensen DR, Valdivia Esparza GK, Leverence EN, Milech De Assuncao T, Mathison AJ, Lomberk G, Smith BC, Volkman BF, Urrutia R, Zimmermann MT. Beyond structural bioinformatics for genomics with dynamics characterization of an expanded KRAS mutational landscape Computational and Structural Biotechnology Journal. January 2023;21:4790-4803. |
250. Chi YI, Jorge SD, Jensen DR, Smith BC, Volkman BF, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R. A multi-layered computational structural genomics approach enhances domain-specific interpretation of Kleefstra syndrome variants in EHMT1 Computational and Structural Biotechnology Journal. January 2023;21:5249-5258. |
251. Schlimgen RR, Peterson FC, Heukers R, Smit MJ, McCorvy JD, Volkman BF. Structural basis for selectivity and antagonism in extracellular GPCR-nanobodies. Nat Commun. 2024 May 30;15(1):4611. PMCID: PMC11139983 |
252. Chi YI, Jorge SD, Jensen DR, Smith BC, Volkman BF, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R. A multi-layered computational structural genomics approach enhances domain-specific interpretation of Kleefstra syndrome variants in EHMT1. Comput Struct Biotechnol J. 2023;21:5249-5258. PMCID: PMC10632586 |
253. Kerber PJ, Nuñez R, Jensen DR, Zhou AL, Peterson FC, Hill RB, Volkman BF, Smith BC. Fragment-based screening by protein-detected NMR spectroscopy. Methods Enzymol. 2023;690:285-310. PMCID: PMC10657026 |
254. Ratnasinghe BD, Haque N, Wagenknecht JB, Jensen DR, Valdivia Esparza GK, Leverence EN, Milech De Assuncao T, Mathison AJ, Lomberk G, Smith BC, Volkman BF, Urrutia R, Zimmermann MT. Beyond structural bioinformatics for genomics with dynamics characterization of an expanded KRAS mutational landscape. Comput Struct Biotechnol J. 2023;21:4790-4803. PMCID: PMC10570560 |
255. Pontejo SM, Martinez S, Zhao A, Barnes K, de Anda J, Alimohamadi H, Lee EY, Dishman AF, Volkman BF, Wong GCL, Garboczi DN, Ballesteros A, Murphy PM. Chemokines Kill Bacteria by Binding Anionic Phospholipids without Triggering Antimicrobial Resistance. bioRxiv. 2024 Jul 25. PMCID: PMC11291121 |
256. Shi ZR, Mabuchi T, Riutta SJ, Wu X, Peterson FC, Volkman BF, Hwang ST. The Chemokine, CCL20, and Its Receptor, CCR6, in the Pathogenesis and Treatment of Psoriasis and Psoriatic Arthritis. J Psoriasis Psoriatic Arthritis. 2023 Jul;8(3):107-117. PMCID: PMC11361516 |
257. Xu T, Schou AS, Lackman JJ, Barrio-Calvo M, Verhallen L, Goth CK, Jensen BAH, Veldkamp CT, Volkman BF, Peterson FC, Hjortø GM. Chemokine Receptor N-Terminus Charge Dictates Reliance on Post-Translational Modifications for Effective Ligand Capture and Following Boosting by Defense Peptides. Int J Mol Sci. 2024 Oct 09;25(19). PMCID: PMC11477141 |
Books, Chapters, and Reviews |
1. Aceti, DJ, Blommel, PG, Endo, Y, Fox, BG, Frederick, RO, Hegeman, AD, Jeon, WB, Kimball, TL, Lee, JM, Newman, CS, Peterson, FC, Sawasaki, T, Seder, KD, Sussman, MR, Ulrich, EL, Wrobel, RL, Thao, S, Vinarov, DA, Volkman, BF and Zhao, Q, Role of Nucleic Acid and Protein Manipulation Technologies in High-Throughput Structural Biology Effort (2002) in Biopolymers. Volume 4: Polyamides and Complex Proteinaceous Materials (Part B), Steinbüchel, A. Ed., Wiley-VCH Verlag GmbH, Weinheim, Germany. |
2. Markley, JL, Ulrich, EL, Westler, WM, and Volkman, BF, Macromolecular Structure Determination by NMR Spectroscopy, (2003) Methods Biochem. Anal., 44, 89-113. |
3. Volkman, BF, Lytle, BL and Wu, JHD, Dockerin domains (2004) in Handbook of Metalloproteins, Volume 3 (W. Bode, A. Messerschmidt and M. Cygler, eds.), Wiley and Sons, Chichester. |
4. Markley, JL, Bahrami, A, Eghbalnia, HR, Peterson, FC, Ulrich, EL, Westler, WM, and Volkman, BF Macromolecular structure determination by NMR spectroscopy, (2008) Structural Bioinformatics 2nd edition John Wiley & Sons, Inc. |
5. Peterson, FC and Volkman, BF Diversity of polyproline recognition by EVH1 domains, (2009), Front Biosci 14 833-46. |
6. Volkman, BF, Liu, TY and Peterson, FC, Lymphotactin Structural Dynamics (2009) Methods in Enzymology 461 51-70. |
7. Weiner JJ, Peterson FC, Volkman BF, Cutler SR. Structural and functional insights into core ABA signaling (2010) Curr Opin Plant Biol 13 495-502. |
8. Ziarek JJ, Peterson FC, Lytle BL, Volkman BF. Binding Site Identification and Structure Determination of Protein-Ligand Complexes by NMR: A Semiautomated Approach (2011) Methods in Enzymology 493 241-75. |
Editorials, Letters To Editor, Other |
1. Invention disclosure, filed January 7, 2010, Structure-based discovery of small molecule chemokine inhibitors Brian F. Volkman, Yu Chen and Christopher Veldkamp. |
2. USPTO Non-provisional application 12/380,308 filed 2/26/2009, Engineered CXCL 12 Alpha Locked Dimer Polypeptide Brian F. Volkman, Christopher T. Veldkamp, Francis C. Peterson, Thomas Sakmar, and Christoph Seibert; MCW #1548; Q&B #650053.00133. Major provisions allowed; final issue pending. |
3. Invention disclosure, filed July 26, 2006, Procedure for on-column refolding of recombinant chemokines from protein inclusion bodies Brian F. Volkman, Francis C. Peterson and Christopher T. Veldkamp. |
4. Invention disclosure, filed June 20, 2006, Plasmid DNA for expression of mutant human chemokine XCL1/Ltn-V21C/V59C Brian F. Volkman and Francis C. Peterson. |
Database, Video, or Other Research/Clinical Contributions |
1. 1NTR, SOLUTION STRUCTURE OF THE N-TERMINAL RECEIVER DOMAIN OF NTRC, SOLUTION NMR, 9/16/94, Volkman, B.F., Nohaile, M.J., Amy, N.K., Kustu, S., Wemmer, D.E. |
2. 1B1V, NMR STRUCTURE OF PSP1, PLASMATOCYTE-SPREADING PEPTIDE FROM PSEUDOPLUSIA INCLUDENS, SOLUTION NMR, 11/23/98, Volkman, B.F., Clark, K.D., Anderson, M.E., Pech, L.L., Markley, J.L., Strand, M.R. |
3. 1B3I, NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (MINIMIZED AVERAGE STRUCTURE), SOLUTION NMR, 12/11/98, Babu, C.R., Volkman, B.F., Bullerjahn, G.S. |
4. 1B5N, NMR STRUCTURE OF PSP1, PLASMATOCYTE-SPREADING PEPTIDE FROM PSEUDOPLUSIA INCLUDENS, SOLUTION NMR, 1/7/99, Volkman, B.F., Clark, K.D., Anderson, M.E., Pech, L.L., Markley, J.L., Strand, M.R. |
5. 1BUB, DETERMINATION OF INTERNUCLEAR ANGLES OF DNA USING PARAMAGNETIC ASSISTED MAGNETIC ALIGNMENT, SOLUTION NMR, 9/3/98, Marathias, V.M., Beger, R.D., Bolton, P.H. |
6. 1DAQ, SOLUTION STRUCTURE OF THE TYPE I DOCKERIN DOMAIN FROM THE CLOSTRIDIUM THERMOCELLUM CELLULOSOME (MINIMIZED AVERAGE STRUCTURE), SOLUTION NMR, 10/31/99, Lytle, B.L., Volkman, B.F., Westler, W.M., Heckman, M.P., Wu, J.H.D. |
7. 1DAV, SOLUTION STRUCTURE OF THE TYPE I DOCKERIN DOMAIN FROM THE CLOSTRIDIUM THERMOCELLUM CELLULOSOME (20 STRUCTURES), SOLUTION NMR, 10/31/99, Lytle, B.L., Volkman, B.F., Westler, W.M., Heckman, M.P., Wu, J.H.D. |
8. 1DC7, STRUCTURE OF A TRANSIENTLY PHOSPHORYLATED "SWITCH" IN BACTERIAL SIGNAL TRANSDUCTION, SOLUTION NMR, 11/4/99, Kern, D., Volkman, B.F., Luginbuhl, P., Nohaile, M.J., Kustu, S., Wemmer, D.E. |
9. 1DC8, STRUCTURE OF A TRANSIENTLY PHOSPHORYLATED "SWITCH" IN BACTERIAL SIGNAL TRANSDUCTION, SOLUTION NMR, 11/4/99, Kern, D., Volkman, B.F., Luginbuhl, P., Nohaile, M.J., Kustu, S., Wemmer, D.E. |
10. 1DV5, TERTIARY STRUCTURE OF APO-D-ALANYL CARRIER PROTEIN, SOLUTION NMR, 1/19/00, Volkman, B.F., Zhang, Q., Debabov, D.V., Rivera, E., Kresheck, G.C., Neuhaus, F.C. |
11. 1HQB, TERTIARY STRUCTURE OF APO-D-ALANYL CARRIER PROTEIN, SOLUTION NMR, 12/14/00, Volkman, B.F., Zhang, Q., Debabov, D.V., Rivera, E., Kresheck, G., Neuhaus, F.C. |
12. 1J8I, Solution Structure of Human Lymphotactin, SOLUTION NMR, 5/21/01, Kuloglu, E.S., McCaslin, D.R., Markley, J.L., Pauza, C.D., Volkman, B.F. |
13. 1J9O, SOLUTION STRUCTURE OF HUMAN LYMPHOTACTIN, SOLUTION NMR, 5/28/01, Kuloglu, E.S., McCaslin, D.R., Kitabwalla, M., Pauza, C.D., Markley, J.L., Volkman, B.F. |
14. 1JJZ, REFINED STRUCTURE AND DISULFIDE PAIRING OF THE KALATA B1 PEPTIDE, SOLUTION NMR, 7/10/01, Skjeldal, L., Gran, L., Sletten, K., Volkman, B.F. |
15. 1K48, REFINED STRUCTURE AND DISULFIDE PAIRING OF THE KALATA B1 PEPTIDE, SOLUTION NMR, 10/5/01, Skjeldal, L., Gran, L., Sletten, K., Volkman, B.F. |
16. 1MKE, Structure of the N-WASP EVH1 Domain-WIP complex, SOLUTION NMR, 8/29/02, Volkman, B.F., Prehoda, K.E., Scott, J.A., Peterson, F.C., Lim, W.A. |
17. 1Q4R, Gene Product of At3g17210 from Arabidopsis Thaliana, X-RAY DIFFRACTION, 8/4/03, Phillips Jr., G.N., Bingman, C.A., Johnson, K.A., Smith, D.W., Center for Eukaryotic Structural Genomics (CESG) |
18. 1Q53, SOLUTION STRUCTURE OF HYPOTHETICAL ARABIDOPSIS THALIANA PROTEIN AT3G17210. CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS TARGET 13081, SOLUTION NMR, 8/6/03, Lytle, B.L., Peterson, F.C., Volkman, B.F., Center for Eukaryotic Structural Genomics (CESG) |
19. 1RY4, NMR Structure of the CRIB-PDZ module of Par-6, SOLUTION NMR, 12/19/03, Peterson, F.C., Penkert, R.R., Volkman, B.F., Prehoda, K.E. |
20. 1RZX, Crystal Structure of a Par-6 PDZ-peptide Complex, X-RAY DIFFRACTION, 12/29/03, Peterson, F.C., Penkert, R.R., Volkman, F.B., Prehoda, K.E. |
21. 1SE9, Structure of At3g01050, a ubiquitin-fold protein from Arabidopsis thaliana, SOLUTION NMR, 2/16/04, Volkman, B.F., Lytle, B.L., Peterson, F.C., Center for Eukaryotic Structural Genomics (CESG) |
22. 1SJG, Solution Structure of T4moC, the Rieske Ferredoxin Component of the Toluene 4-Monooxygenase Complex, SOLUTION NMR, 3/3/04, Skjeldal, L., Peterson, F.C., Doreleijers, J.F., Moe, L.A., Pikus, J.D., Volkman, B.F., Westler, W.M., Markley, J.L., Fox, B.G. |
23. 1T0Y, Solution Structure of a Ubiquitin-Like Domain from Tubulin-binding Cofactor B, SOLUTION NMR, 4/13/04, Lytle, B.L., Peterson, F.C., Qui, S.H., Luo, M., Volkman, B.F., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG) |
24. 1VRE, SOLUTION STRUCTURE OF COMPONENT IV GLYCERA DIBRANCHIATA MONOMERIC HEMOGLOBIN-CO, SOLUTION NMR, 3/25/99, Volkman, B.F., Alam, S.L., Satterlee, J.D., Markley, J.L. |
25. 1VRF, SOLUTION STRUCTURE OF COMPONENT IV GLYCERA DIBRANCHIATA MONOMERIC HEMOGLOBIN-CO, SOLUTION NMR, 3/25/99, Volkman, B.F., Alam, S.L., Satterlee, J.D., Markley, J.L. |
26. 1XFL, Solution Structure of Thioredoxin h1 from Arabidopsis Thaliana, SOLUTION NMR, 9/15/04, Peterson, F.C., Lytle, B.L., Sampath, S., Vinarov, D., Tyler, E., Shahan, M., Markley, J.L., Volkman, B.F., Center for Eukaryotic Structural Genomics (CESG) |
27. 1YEL, Structure of the hypothetical Arabidopsis thaliana protein At1g16640.1, SOLUTION NMR, 12/28/04, Peterson, F.C., Waltner, J.K., Lytle, B.L., Volkman, B.F., Center for Eukaryotic Structural Genomics (CESG) |
28. 1ZR9, Solution Structure of a Human C2H2-type Zinc Finger Protein, SOLUTION NMR, 5/19/05, Lytle, B.L., Peterson, F.C., Volkman, B.F., Center for Eukaryotic Structural Genomics (CESG) |
29. 2B3I, NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES), SOLUTION NMR, 12/11/98, Babu, C.R., Volkman, B.F., Bullerjahn, G.S. |
30. 2FI2, Solution structure of the SCAN homodimer from MZF-1/ZNF42, SOLUTION NMR, 12/27/05, Volkman, B.F., Peterson, F.C., Sander, T.L., Waltner, J.K., Center for Eukaryotic Structural Genomics (CESG) |
31. 2G0Q, Solution structure of At5g39720.1 from Arabidopsis thaliana, SOLUTION NMR, 2/13/06, Volkman, B.F., Peterson, F.C., Lytle, B.L., Center for Eukaryotic Structural Genomics (CESG) |
32. 2GOV, Solution structure of Murine p22HBP, SOLUTION NMR, 4/14/06, Volkman, B.F., Dias, J.S., Goodfellow, B.J., Peterson, F.C., Center for Eukaryotic Structural Genomics (CESG) |
33. 2GOW, Solution structure of BC059385 from Homo sapiens, SOLUTION NMR, 4/14/06, Volkman, B.F., de la Cruz, N.B., Lytle, B.L., Peterson, F.C., Center for Eukaryotic Structural Genomics (CESG) |
34. 2HDL, Solution structure of Brak/CXCL14, SOLUTION NMR, 6/20/06, Peterson, F.C., Thorpe, J.A., Harder, A.G., Volkman, B.F., Schwarze, S.R. |
35. 2HDM, Solution structure of V21C/V59C Lymphotactin/XCL1, SOLUTION NMR, 6/20/06, Volkman, B.F., Tuinstra, R.L., Peterson, F.C., Elgin, E.S. |
36. 2I9Y, Solution structure of Arabidopsis thaliana protein At1g70830, a member of the major latex protein family, SOLUTION NMR, 9/6/06, Volkman, B.F., de la Cruz, N.B., Lytle, B.L., Peterson, F.C., Center for Eukaryotic Structural Genomics (CESG) |
37. 2IFS, Structure of the N-WASP EVH1 domain in complex with an extended WIP peptide, SOLUTION NMR, 9/21/06, Volkman, B.F., Peterson, F.C., Deng, Q. |
38. 2JP1, Solution structure of the alternative conformation of XCL1/Lymphotactin, SOLUTION NMR, 4/17/07, Volkman, B.F., Tuinstra, R.L., Peterson, F.C. |
39. 2JQV, Solution structure At3g28950.1 from Arabidopsis thaliana, SOLUTION NMR, 6/7/07, Volkman, B.F., de la Cruz, N.B., Peterson, F.C., Center for Eukaryotic Structural Genomics (CESG) |
40. 2JYC, NMR solution structure of human protein C6orf130, a putative macro domain, SOLUTION NMR, 12/12/07, Volkman, B.F., Lytle, B.L., Peterson, F.C., Center for Eukaryotic Structural Genomics (CESG) |
41. 2K01, Structure of a locked SDF1 dimer, SOLUTION NMR, 1/23/08, Volkman, B.F., Veldkamp, C.T., Peterson, F.C. |
42. 2K03, Structure of SDF1 in complex with the CXCR4 N-terminus containing a sulfotyrosine at postition 21, SOLUTION NMR, 1/24/08, Volkman, B.F., Veldkamp, C.T., Peterson, F.C. |
43. 2K04, Structure of SDF1 in complex with the CXCR4 N-terminus containing no sulfotyrosines, SOLUTION NMR, 1/24/08, Volkman, B.F., Veldkamp, C.T., Peterson, F.C. |
44. 2K05, Structure of SDF1 in complex with the CXCR4 N-terminus containing sulfotyrosines at postitions 7, 12 and 21, SOLUTION NMR, 1/24/08, Volkman, B.F., Veldkamp, C.T., Peterson, F.C. |
45. 2KEC, Structure of SDF-1/CXCL12, SOLUTION NMR, , CYTOKINE, 9/29/09, 1/28/09, Volkman, B.F., Veldkamp, C.T., Peterson, F.C. |
46. 2KED, Structure of SDF-1/CXCL12, SOLUTION NMR, , CYTOKINE, 9/29/09, 1/28/09, Volkman, B.F., Veldkamp, C.T., Peterson, F.C. |
47. 2KEE, Structure of SDF-1/CXCL12, SOLUTION NMR, , CYTOKINE, 9/29/09, 1/28/09, Volkman, B.F., Veldkamp, C.T., Peterson, F.C. |
48. 2KOJ, Solution structure of mouse Par-3 PDZ2 (residues 450-558), SOLUTION NMR, , SIGNALING PROTEIN, 11/10/09, 9/23/09, Volkman, B.F., Tyler, R.C., Peterson, F.C., Center for Eukaryotic Structural Genomics (CESG) |
49. 2KOM, Solution structure of humar Par-3b PDZ2 (residues 451-549), SOLUTION NMR, , SIGNALING PROTEIN, 11/10/09, 9/24/09, Volkman, B.F., Tyler, R.C., Peterson, F.C., Center for Eukaryotic Structural Genomics (CESG) |
50. 2QKZ, Nickel-substituted Rubredoxin from Desulfovibrio Vulgaris, SOLUTION NMR, , ELECTRON TRANSPORT, 7/8/08, 7/12/07, Goodfellow, B.J., Nunes, S.G., Volkman, B.F., Moura, J.J.G., Macedo, A.L., Duarte, I.C., Markley, J.L., Moura, I. |
51. 2QL0, Zinc-substituted Rubredoxin from Desulfovibrio Vulgaris, SOLUTION NMR, , ELECTRON TRANSPORT, 7/8/08, 7/12/07, Goodfellow, B.J., Nunes, S.G., Volkman, B.F., Moura, J.G., Macedo, A.L., Duarte, I.C., Markley, J.L., Moura, I. |
52. 2KQR, Solution structure of the N-terminal domain (residues 1-111) of Brugia malayi asparaginyl-tRNA synthetase, SOLUTION NMR, , LIGASE, 12/15/09, 11/16/09, Volkman, B.F., Peterson, F.C., Kron, M.A., Center for Eukaryotic Structural Genomics (CESG). |
53. 2KQM, Solution structure of the KI O18/O8 Y87H immunoglobulin light chain variable domain, SOLUTION NMR, , , IMMUNE SYSTEM, 2010-03-16, 2009-11-11, Volkman, B.F., Peterson, F.C., Ramirez-Alvarado, M., Baden, E.M. |
54. 2KQN, Solution structure of the AL-09 H87Y immunoglobulin light chain variable domain, SOLUTION NMR, , , IMMUNE SYSTEM, 2010-03-16, 2009-11-11, Volkman, B.F., Peterson, F.C., Ramirez-Alvarado, M., Baden, E.M. |
55. 2KQR, Solution structure of the N-terminal domain (residues 1-111) of Brugia malayi asparaginyl-tRNA synthetase, SOLUTION NMR, , , LIGASE, 2009-12-15, 2009-11-16, Volkman, B.F., Peterson, F.C., Kron, M.A., Center for Eukaryotic Structural Genomics (CESG) |
56. 2KVA, SOLUTION STRUCTURE OF CI-MPR ligand-free domain 5, SOLUTION NMR, , , PROTEIN TRANSPORT, 2010-07-07, 2010-03-10, Olson, L.J., Peterson, F.C., Volkman, B.F., Dahms, N.M. |
57. 2KVB, Solution structure of CI-MPR domain 5 bound to N-acetylglucosaminyl 6-phosphomethylmannoside, SOLUTION NMR, , , PROTEIN TRANSPORT, 2010-07-07, 2010-03-10, Olson, L.J., Peterson, F.C., Volkman, B.F., Dahms, N.M. |
58. 2KY5, Solution structure of the PECAM-1 cytoplasmic tail with DPC, SOLUTION NMR, , , CELL ADHESION, 2010-05-26, 2010-05-14, Lytle, B.L., Peterson, F.C., Volkman, B.F., Paddock, C., Newman, D.K., Center for Eukaryotic Structural Genomics (CESG) |
59. 2QL0, Zinc-substituted Rubredoxin from Desulfovibrio Vulgaris, SOLUTION NMR, , , ELECTRON TRANSPORT, 2008-07-08, 2007-07-12, Goodfellow, B.J., Nunes, S.G., Volkman, B.F., Moura, J.G., Macedo, A.L., Duarte, I.C., Markley, J.L., Moura, I. |
60. 3LHR, Crystal structure of the SCAN domain from Human ZNF24, X-RAY DIFFRACTION, , 1.90, TRANSCRIPTION REGULATOR, 2010-05-12, 2010-01-22, Volkman, B.F., Peterson, F.C., Bingman, C.A., Phillips, G.N., Center for Eukaryotic Structural Genomics (CESG) |
61. 3NJ0, X-ray crystal structure of the Py12-pyrabactin A complex, X-RAY DIFFRACTION, , 1.89, HORMONE RECEPTOR, 2010-08-18, 2010-06-16, Peterson, F.C., Burgie, E.S., Bingman, C.A., Volkman, B.F., Phillips Jr., G.N., Cutler, S.R., Jensen, D.R., Center for Eukaryotic Structural Genomics (CESG) |
62. 3NJ1, X-ray crystal structure of the Py12(V114I)-pyrabactin A complex, X-RAY DIFFRACTION, , 1.95, HORMONE RECEPTOR, 2010-08-18, 2010-06-16, Peterson, F.C., Burgie, E.S., Bingman, C.A., Volkman, B.F., Phillips Jr., G.N., Cutler, S.R., Jensen, D.R., Center for Eukaryotic Structural Genomics (CESG) |
63. 3NJO, X-ray crystal structure of the Pyr1-pyrabactin A complex, X-RAY DIFFRACTION, , 2.47, HORMONE RECEPTOR, 2010-08-18, 2010-06-17, Burgie, E.S., Bingman, C.A., Phillips Jr., G.N., Peterson, F.C., Volkman, B.F., Cutler, S.R., Jensen, D.R., Center for Eukaryotic Structural Genomics (CESG) |