Rojas M, Heuer LS, Zhang W, Sweeney N, Ramírez-Santana C, Leung PSC, Lam A, Kamat S, Mendelsohn AR, Huang M, Yu B, Ackerman P, Wei Q, Larrick JW, Chen YG, Ridgway WM. Alternate splicing converts human CD137 from costimulatory to immunosuppressive function. J Autoimmun. 2025 Dec;157:103498 PMID: 41205341 SCOPUS ID: 2-s2.0-105020876359 11/09/2025
Ciecko AE, Nabi R, Drewek A, Schauder DM, Zakharov PN, Wan X, Lieberman SM, Cui W, Hessner MJ, Lin CW, Chen YG. An interleukin-27-centered cytokine circuit regulates macrophage and T cell interactions in autoimmune diabetes Iscience. 17 October 2025;28(10) SCOPUS ID: 2-s2.0-105016644538 10/17/2025
Ciecko AE, Nabi R, Drewek A, Schauder DM, Zakharov PN, Wan X, Lieberman SM, Cui W, Hessner MJ, Lin CW, Chen YG. An interleukin-27-centered cytokine circuit regulates macrophage and T cell interactions in autoimmune diabetes. iScience. 2025 Oct 17;28(10):113537 PMID: 41050931 PMCID: PMC12494592 10/06/2025
Juan W, Ahn KW, Chen YG, Lin CW. DropDAE: Denosing Autoencoder with Contrastive Learning for Addressing Dropout Events in scRNA-seq Data. Bioengineering (Basel). 2025 Jul 31;12(8) PMID: 40868342 PMCID: PMC12383624 08/30/2025
Wang Y, Chen YG, Ahn KW, Lin CW. A realistic FastQ-based framework FastQDesign for ScRNA-seq study design issues. Commun Biol. 2025 Apr 02;8(1):547 PMID: 40175506 PMCID: PMC11965523 SCOPUS ID: 2-s2.0-105001734248 04/03/2025
Juan W, Ahn KW, Chen YG, Lin CW. CCI: A Consensus Clustering-Based Imputation Method for Addressing Dropout Events in scRNA-Seq Data. Bioengineering (Basel). 2025 Jan 03;12(1) PMID: 39851305 PMCID: PMC11763284 01/24/2025
Debreceni IL, Barr JY, Upton EM, Chen YG, Lieberman SM. IL-27 promotes pathogenic T cells in a mouse model of Sjögren\'s disease. Clin Immunol. 2024 Jul;264:110260 PMID: 38788885 PMCID: PMC11203157 SCOPUS ID: 2-s2.0-85193848203 05/25/2024
Srivastava N, Hu H, Peterson OJ, Vomund AN, Stremska M, Zaman M, Giri S, Li T, Lichti CF, Zakharov PN, Zhang B, Abumrad NA, Chen YG, Ravichandran KS, Unanue ER, Wan X. CXCL16-dependent scavenging of oxidized lipids by islet macrophages promotes differentiation of pathogenic CD8+ T cells in diabetic autoimmunity. Immunity. 2024 Jul 09;57(7):1629-1647.e8 PMID: 38754432 PMCID: PMC11236520 SCOPUS ID: 2-s2.0-85194456425 05/17/2024
Pant T, Lin CW, Bedrat A, Jia S, Roethle MF, Truchan NA, Ciecko AE, Chen YG, Hessner MJ. Monocytes in type 1 diabetes families exhibit high cytolytic activity and subset abundances that correlate with clinical progression. Sci Adv. 2024 May 17;10(20):eadn2136 PMID: 38758799 PMCID: PMC11100571 SCOPUS ID: 2-s2.0-85193631768 05/17/2024
Alvarez-Argote S, Paddock SJ, Flinn MA, Moreno CW, Knas MC, Almeida VA, Buday SL, Bakhshian Nik A, Patterson M, Chen YG, Lin CW, O\'Meara CC. IL-13 promotes functional recovery after myocardial infarction via direct signaling to macrophages. JCI Insight. 2024 Jan 23;9(2) PMID: 38051583 PMCID: PMC10906228 SCOPUS ID: 2-s2.0-85183312687 12/06/2023