Medical College of Wisconsin
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A patient similarity-embedded Bayesian approach to prognostic biomarker inference with application to thoracic cancer immunity. J R Stat Soc Ser C Appl Stat 2025 Jun;74(3):800-823

Date

09/22/2025

Pubmed ID

40980019

Pubmed Central ID

PMC12449836

DOI

10.1093/jrsssc/qlaf001

Scopus ID

2-s2.0-105008705710 (requires institutional sign-in at Scopus site)

Abstract

This paper introduces a novel statistical methodology integrating machine learning (ML) and Bayesian modelling to facilitate personalized prognostic predictions with application to oncology. Utilizing power priors, we construct 'patient-similarity embeddings' that identify localized patterns of prognosis. The methodology is applied to study the prognostic value of markers of anticancer immunity within the tumour microenvironment of nonsmall cell lung cancer while adjusting for established clinical characteristics. The method outperforms traditional regression and ML models, while accurately identifying subgroup patterns, thereby enhancing statistical inference and hypothesis testing.

Author List

Yu D, Huang M, Kane MJ, Hobbs BP

Author

Duo Yu PhD Assistant Professor in the Data Science Institute department at Medical College of Wisconsin