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Publications indexed to the term Amino Acids

FacultyTitle
1A comprehensive assessment of selective amino acid 15N-labeling in human embryonic kidney 293 cells for NMR spectroscopy. (Subedi GP, Roberts ET, Davis AR, Kremer PG, Amster IJ, Barb AW) J Biomol NMR 2024 Jun;78(2):125-132       3 Citations
1Botulinum Neurotoxin A4 Has a 1000-Fold Reduced Potency Due to Three Single Amino Acid Alterations in the Protein Receptor Binding Domain. (Tepp WH, Bradshaw M, Gardner AP, Kaufman RL, Barbieri JT, Pellett S) Int J Mol Sci 2023 Mar 16;24(6)       3 Citations
1De novo design of small beta barrel proteins. (Kim DE, Jensen DR, Feldman D, Tischer D, Saleem A, Chow CM, Li X, Carter L, Milles L, Nguyen H, Kang A, Bera AK, Peterson FC, Volkman BF, Ovchinnikov S, Baker D) Proc Natl Acad Sci U S A 2023 Mar 14;120(11):e2207974120       11 Citations
2A single F153Sβ3 mutation causes constitutive integrin αIIbβ3 activation in a variant form of Glanzmann thrombasthenia. (Koukouritaki SB, Thinn AMM, Ashworth KJ, Fang J, Slater HS, Du LM, Nguyen HTT, Pillois X, Nurden AT, Ng CJ, Di Paola J, Zhu J, Wilcox DA) Blood Adv 2023 Jul 11;7(13):3180-3191       2 Citations
1Identification of amino acid domains of Borrelia burgdorferi P66 that are surface exposed and important for localization, oligomerization, and porin function of the protein. (Curtis MW, Fierros CH, Hahn BL, Surdel MC, Kessler J, Anderson PN, Vandewalle-Capo M, Bonde M, Zhu J, Bergström S, Coburn J) Front Cell Infect Microbiol 2022;12:991689       3 Citations
1De novo coding variants in the AGO1 gene cause a neurodevelopmental disorder with intellectual disability. (Schalk A, Cousin MA, Dsouza NR, Challman TD, Wain KE, Powis Z, Minks K, Trimouille A, Lasseaux E, Lacombe D, Angelini C, Michaud V, Van-Gils J, Spataro N, Ruiz A, Gabau E, Stolerman E, Washington C, Louie R, Lanpher BC, Kemppainen JL, Innes M, Kooy F, Meuwissen M, Goldenberg A, Lecoquierre F, Vera G, Diderich KEM, Sheidley B, El Achkar CM, Park M, Hamdan FF, Michaud JL, Lewis AJ, Zweier C, Reis A, Wagner M, Weigand H, Journel H, Keren B, Passemard S, Mignot C, van Gassen K, Brilstra EH, Itzikowitz G, O'Heir E, Allen J, Donald KA, Korf BR, Skelton T, Thompson M, Robin NH, Rudy NL, Dobyns WB, Foss K, Zarate YA, Bosanko KA, Alembik Y, Durand B, Tran Mau-Them F, Ranza E, Blanc X, Antonarakis SE, McWalter K, Torti E, Millan F, Dameron A, Tokita M, Zimmermann MT, Klee EW, Piton A, Gerard B) J Med Genet 2022 Oct;59(10):965-975       16 Citations
2Protein primary structure correlates with calcium oxalate stone matrix preference. (Tian Y, Tirrell M, Davis C, Wesson JA) PLoS One 2021;16(9):e0257515       9 Citations
1An Eight Amino Acid Segment Controls Oligomerization and Preferred Conformation of the two Non-visual Arrestins. (Chen Q, Zhuo Y, Sharma P, Perez I, Francis DJ, Chakravarthy S, Vishnivetskiy SA, Berndt S, Hanson SM, Zhan X, Brooks EK, Altenbach C, Hubbell WL, Klug CS, Iverson TM, Gurevich VV) J Mol Biol 2021 Feb 19;433(4):166790       18 Citations
1Role of ultraviolet mutational signature versus tumor mutation burden in predicting response to immunotherapy. (Pham TV, Boichard A, Goodman A, Riviere P, Yeerna H, Tamayo P, Kurzrock R) Mol Oncol 2020 Aug;14(8):1680-1694       36 Citations
1Structure-function guided modeling of chemokine-GPCR specificity for the chemokine XCL1 and its receptor XCR1. (Fox JC, Thomas MA, Dishman AF, Larsen O, Nakayama T, Yoshie O, Rosenkilde MM, Volkman BF) Sci Signal 2019 Sep 03;12(597)       17 Citations
1Binding orientation and interaction of bile salt in its ternary complex with pancreatic lipase-colipase system. (Haque N, Prakash Prabhu N) Biochem Biophys Res Commun 2018 May 23;499(4):907-912       7 Citations
1The membrane-distal regions of integrin α cytoplasmic domains contribute differently to integrin inside-out activation. (Thinn AMM, Wang Z, Zhu J) Sci Rep 2018 Mar 22;8(1):5067       9 Citations
2Urinary Metabolites Associated with Blood Pressure on a Low- or High-Sodium Diet. (Cheng Y, Song H, Pan X, Xue H, Wan Y, Wang T, Tian Z, Hou E, Lanza IR, Liu P, Liu Y, Laud PW, Usa K, He Y, Liang M) Theranostics 2018;8(6):1468-1480       32 Citations
1Protein Kinetics and Metabolic Effects Related to Disease States in the Intensive Care Unit. (Martindale RG, Heyland DK, Rugeles SJ, Wernerman J, Weijs PJ, Patel JJ, McClave SA) Nutr Clin Pract 2017 Apr;32(1_suppl):21S-29S       14 Citations
1Targeting Stromal Glutamine Synthetase in Tumors Disrupts Tumor Microenvironment-Regulated Cancer Cell Growth. (Yang L, Achreja A, Yeung TL, Mangala LS, Jiang D, Han C, Baddour J, Marini JC, Ni J, Nakahara R, Wahlig S, Chiba L, Kim SH, Morse J, Pradeep S, Nagaraja AS, Haemmerle M, Kyunghee N, Derichsweiler M, Plackemeier T, Mercado-Uribe I, Lopez-Berestein G, Moss T, Ram PT, Liu J, Lu X, Mok SC, Sood AK, Nagrath D) Cell Metab 2016 Nov 08;24(5):685-700       330 Citations
3S-SCAM, a rare copy number variation gene, induces schizophrenia-related endophenotypes in transgenic mouse model. (Zhang N, Zhong P, Shin SM, Metallo J, Danielson E, Olsen CM, Liu QS, Lee SH) J Neurosci 2015 Feb 04;35(5):1892-904       18 Citations
1Amino acid coevolution reveals three-dimensional structure and functional domains of insect odorant receptors. (Hopf TA, Morinaga S, Ihara S, Touhara K, Marks DS, Benton R) Nat Commun 2015 Jan 13;6:6077       99 Citations
1PconsFold: improved contact predictions improve protein models. (Michel M, Hayat S, Skwark MJ, Sander C, Marks DS, Elofsson A) Bioinformatics 2014 Sep 01;30(17):i482-8       85 Citations
2Real-time measurements of amino acid and protein hydroperoxides using coumarin boronic acid. (Michalski R, Zielonka J, Gapys E, Marcinek A, Joseph J, Kalyanaraman B) J Biol Chem 2014 Aug 08;289(32):22536-53       63 Citations
1Deaminative and decarboxylative catalytic alkylation of amino acids with ketones. (Kalutharage N, Yi CS) Angew Chem Int Ed Engl 2013 Dec 16;52(51):13651-5       32 Citations
1On the specificity of heparin/heparan sulfate binding to proteins. Anion-binding sites on antithrombin and thrombin are fundamentally different. (Mosier PD, Krishnasamy C, Kellogg GE, Desai UR) PLoS One 2012;7(11):e48632       50 Citations
1Modulation of function of sodium-dependent vitamin C transporter 1 (SVCT1) by Rab8a in intestinal epithelial cells: studies utilizing Caco-2 cells and Rab8a knockout mice. (Subramanian VS, Subramanya SB, Ghosal A, Marchant JS, Harada A, Said HM) Dig Dis Sci 2013 Mar;58(3):641-9       10 Citations
1A combined DPA1~DPB1 amino acid epitope is the primary unit of selection on the HLA-DP heterodimer. (Hollenbach JA, Madbouly A, Gragert L, Vierra-Green C, Flesch S, Spellman S, Begovich A, Noreen H, Trachtenberg E, Williams T, Yu N, Shaw B, Fleischhauer K, Fernandez-Vina M, Maiers M) Immunogenetics 2012 Aug;64(8):559-69       48 Citations
1Free energies for coarse-grained proteins by integrating multibody statistical contact potentials with entropies from elastic network models. (Zimmermann MT, Leelananda SP, Gniewek P, Feng Y, Jernigan RL, Kloczkowski A) J Struct Funct Genomics 2011 Jul;12(2):137-47       17 Citations
1Mesenchymal stem cells facilitate axon sorting, myelination, and functional recovery in paralyzed mice deficient in Schwann cell-derived laminin. (Carlson KB, Singh P, Feaster MM, Ramnarain A, Pavlides C, Chen ZL, Yu WM, Feltri ML, Strickland S) Glia 2011 Feb;59(2):267-77       48 Citations
1Asparaginyl-tRNA synthetase pre-transfer editing assay. (Danel F, Caspers P, Nuoffer C, Härtlein M, Kron MA, Page MG) Curr Drug Discov Technol 2011 Mar;8(1):66-75       17 Citations
1Redox-based regulation of signal transduction: principles, pitfalls, and promises. (Janssen-Heininger YM, Mossman BT, Heintz NH, Forman HJ, Kalyanaraman B, Finkel T, Stamler JS, Rhee SG, van der Vliet A) Free Radic Biol Med 2008 Jul 01;45(1):1-17       678 Citations
1Influence of intramolecular electron transfer mechanism in biological nitration, nitrosation, and oxidation of redox-sensitive amino acids. (Zhang H, Xu Y, Joseph J, Kalyanaraman B) Methods Enzymol 2008;440:65-94       12 Citations
1Multiple pocket recognition of SNAP25 by botulinum neurotoxin serotype E. (Chen S, Barbieri JT) J Biol Chem 2007 Aug 31;282(35):25540-7       42 Citations
1In meso structure of the cobalamin transporter, BtuB, at 1.95 A resolution. (Cherezov V, Yamashita E, Liu W, Zhalnina M, Cramer WA, Caffrey M) J Mol Biol 2006 Dec 08;364(4):716-34       89 Citations
2Recognition of a CXCR4 sulfotyrosine by the chemokine stromal cell-derived factor-1alpha (SDF-1alpha/CXCL12). (Veldkamp CT, Seibert C, Peterson FC, Sakmar TP, Volkman BF) J Mol Biol 2006 Jun 23;359(5):1400-9       109 Citations
1Substrate specificity, metal binding properties, and spectroscopic characterization of the DapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae. (Bienvenue DL, Gilner DM, Davis RS, Bennett B, Holz RC) Biochemistry 2003 Sep 16;42(36):10756-63       37 Citations
2A novel zinc finger is required for Mcm10 homocomplex assembly. (Cook CR, Kung G, Peterson FC, Volkman BF, Lei M) J Biol Chem 2003 Sep 19;278(38):36051-8       35 Citations
1The effects of altered apolipoprotein A-I structure on plasma HDL concentration. (Sorci-Thomas MG, Thomas MJ) Trends Cardiovasc Med 2002 Apr;12(3):121-8       174 Citations
1Prediction of peptide ion collision cross sections from topological molecular structure and amino acid parameters. (Mosier PD, Counterman AE, Jurs PC, Clemmer DE) Anal Chem 2002 Mar 15;74(6):1360-70       45 Citations
1Identification of calmodulin isoform-specific binding peptides from a phage-displayed random 22-mer peptide library. (Choi JY, Lee SH, Park CY, Heo WD, Kim JC, Kim MC, Chung WS, Moon BC, Cheong YH, Kim CY, Yoo JH, Koo JC, Ok HM, Chi SW, Ryu SE, Lee SY, Lim CO, Cho MJ) J Biol Chem 2002 Jun 14;277(24):21630-8       30 Citations
1RNA association defines a functionally conserved domain in the nuclear pore protein Nup153. (Dimaano C, Ball JR, Prunuske AJ, Ullman KS) J Biol Chem 2001 Nov 30;276(48):45349-57       21 Citations
1SPI-B activates transcription via a unique proline, serine, and threonine domain and exhibits DNA binding affinity differences from PU.1. (Rao S, Matsumura A, Yoon J, Simon MC) J Biol Chem 1999 Apr 16;274(16):11115-24       45 Citations
1Three distinct D-amino acid substitutions confer potent antiangiogenic activity on an inactive peptide derived from a thrombospondin-1 type 1 repeat. (Dawson DW, Volpert OV, Pearce SF, Schneider AJ, Silverstein RL, Henkin J, Bouck NP) Mol Pharmacol 1999 Feb;55(2):332-8       139 Citations
1NMR evidence for a conformational adaptation of apolipophorin III upon lipid association. (Wang J, Sahoo D, Sykes BD, Ryan RO) Biochem Cell Biol 1998;76(2-3):276-83       11 Citations
1Endogenous protease-activated 66-kDa toxin from Bacillus thuringiensis subsp. kurstaki active against Spodoptera littoralis. (Kumar NS, Venkateswerlu G) FEMS Microbiol Lett 1998 Feb 01;159(1):113-20       16 Citations
1Molecular cloning and expression of a porcine chondrocyte nucleotide pyrophosphohydrolase. (Masuda I, Halligan BD, Barbieri JT, Haas AL, Ryan LM, McCarty DJ) Gene 1997 Sep 15;197(1-2):277-87       25 Citations
2Methanol production during chemotaxis to amino acids in Bacillus subtilis. (Kirby JR, Kristich CJ, Feinberg SL, Ordal GW) Mol Microbiol 1997 May;24(4):869-78       27 Citations
1T cell recognition of MHC class II-associated peptides is independent of peptide affinity for MHC and sodium dodecyl sulfate stability of the peptide/MHC complex. Effects of conservative amino acid substitutions at anchor position 1 of influenza matrix protein19-31. (Wu S, Gorski J, Eckels DD, Newton-Nash DK) J Immunol 1996 May 15;156(10):3815-20       22 Citations
1Effect of serum proteins on sodium-linked transport processes in cultured kidney cells. (Blumenthal SS, Lewand DL, Tipnis PA, Kleinman JG) J Am Soc Nephrol 1995 May;5(11):1964-70       3 Citations
1Functional interactions between the retinoblastoma (Rb) protein and Sp-family members: superactivation by Rb requires amino acids necessary for growth suppression. (Udvadia AJ, Templeton DJ, Horowitz JM) Proc Natl Acad Sci U S A 1995 Apr 25;92(9):3953-7       200 Citations
1Single amino acid substitutions in gD of herpes simplex virus 1 confer resistance to gD-mediated interference and cause cell-type-dependent alterations in infectivity. (Dean HJ, Terhune SS, Shieh MT, Susmarski N, Spear PG) Virology 1994 Feb 15;199(1):67-80       90 Citations
1Purification and properties of Alligator mississipiensis cytochrome c. (Barber MJ, Trimboli AJ, Clark M, Young C, Neame PJ) Arch Biochem Biophys 1993 Mar;301(2):294-8       3 Citations
1Modulation of the H2O2-induced SOS response in Escherichia coli PQ300 by amino acids, metal chelators, antioxidants, and scavengers of reactive oxygen species. (Müller J, Janz S) Environ Mol Mutagen 1993;22(3):157-63       22 Citations
2Purification and characterization of exoenzyme S from Pseudomonas aeruginosa 388. (Kulich SM, Frank DW, Barbieri JT) Infect Immun 1993 Jan;61(1):307-13       44 Citations
1The calcium oxalate crystal growth inhibitor protein produced by mouse kidney cortical cells in culture is osteopontin. (Worcester EM, Blumenthal SS, Beshensky AM, Lewand DL) J Bone Miner Res 1992 Sep;7(9):1029-36       127 Citations
1Perilymphatic fistula: analysis of free amino acids in middle ear microaspirates. (Woodson BT, Fujita S, Mawhinney TP, Schweitzer VG, Peterson EL) Otolaryngol Head Neck Surg 1991 Jun;104(6):796-802       4 Citations
1Free amino acid analysis of guinea pig perilymph: a possible clinical assay for the PLF enigma? (Schweitzer VG, Woodson BT, Mawhinney TD, Rarey KE, Bauman MJ, Raymer SL, Peterson E) Otolaryngol Head Neck Surg 1990 Dec;103(6):981-5       11 Citations
1DNA damage induced by phorbol ester-stimulated neutrophils is augmented by extracellular cofactors. Role of histidine and metals. (Shacter E, Lopez RL, Beecham EJ, Janz S) J Biol Chem 1990 Apr 25;265(12):6693-9       54 Citations
1Partial purification and characterization of thrombolamban, a 22,000 dalton cAMP-dependent protein kinase substrate in platelets. (Fischer TH, White GC 2nd) Biochem Biophys Res Commun 1987 Dec 16;149(2):700-6       38 Citations
1[Dependence of the proliferation of cell line 3T6 on a totally serum-free medium on epidermal growth factor]. (Gudkova DA, Sorokin AB) Tsitologiia 1987 Nov;29(11):1309-13    
1Semiquinone anion radicals from addition of amino acids, peptides, and proteins to quinones derived from oxidation of catechols and catecholamines. An ESR spin stabilization study. (Kalyanaraman B, Premovic PI, Sealy RC) J Biol Chem 1987 Aug 15;262(23):11080-7       148 Citations
1Analysis of P210bcr-abl tyrosine protein kinase activity in various subtypes of Philadelphia chromosome-positive cells from chronic myelogenous leukemia patients. (Maxwell SA, Kurzrock R, Parsons SJ, Talpaz M, Gallick GE, Kloetzer WS, Arlinghaus RB, Kouttab NM, Keating MJ, Gutterman JU) Cancer Res 1987 Mar 15;47(6):1731-9       65 Citations
1Purification and characterization of metallothionein from liver of cadmium exposed rhesus monkeys (Macaca mulatta). (Paliwal VK, Kohli KK, Sharma M, Nath R) Mol Cell Biochem 1986 Aug;71(2):139-47       7 Citations
1Complementation and characterization of chemotaxis mutants of Bacillus subtilis. (Ordal GW, Parker HM, Kirby JR) J Bacteriol 1985 Nov;164(2):802-10       20 Citations
1A pepsinogen from dog stomach. (Twining SS, Huibregtse K, Glick DM) Comp Biochem Physiol B 1983;75(1):103-7       5 Citations
1Purification of calciferol-binding proteins from kidney: physicochemical and immunological properties. (Ghazarian JG, Hsu PY, Girotti AW, Winkelhake JL) J Lipid Res 1978 Jul;19(5):601-12       8 Citations
1The protoporphyrin-apoperoxidase complex. Photooxidation studies. (Mauk MR, Girotti AW) Biochemistry 1974 Apr 09;13(8):1757-63       41 Citations
1Photooxidation of the protoporphyrin-apomyoglobin complex. (Mauk MR, Girotti AW) Biochemistry 1973 Aug 14;12(17):3187-93       22 Citations
1A DNA-lipid protein containing material isolated from calf thymus nuclear chromatin. (Jackson V, Earnhardt J, Chalkley R) Biochem Biophys Res Commun 1968 Oct 24;33(2):253-9       27 Citations
1Properties of protoporphyrin-apomyoglobin complexes and related compounds. (Breslow E, Koehler R, Girotti AW) J Biol Chem 1967 Sep 25;242(18):4149-56       32 Citations