Medical College of Wisconsin
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Publications indexed to the term Phylogeny

FacultyTitle
1A new member of the novel, non-core Brucella clade: An exotic frog isolate closely related to atypical Brucella isolates from recent human brucellosis cases in Australia. (Ufermann CM, Hofreuter D, Gadicherla AK, Spröer C, Bunk B, Oehme R, Cantet F, Köhler S, Al Dahouk S) BMC Microbiol 2025 Dec 13;25(1):790    
1High Prevalence of Plasmid-Mediated Quinolone Resistance in Salmonella enterica Serovars Isolated From Surface Water. (Monte DFM, de Lima Rocha AD, Lemos MLP, de Lima LA, Cabrera JM, da Silva NJ, Huang X, Chen Z, Brown EW, Allard MW, Bell RL, Toro M, Meng J, de Oliveira CJB) Environ Microbiol 2025 Jul;27(7):e70140       3 Citations
1Monkeypox virus: phylogenomics, host-pathogen interactome and mutational cascade. (Kumar R, Nagar S, Haider S, Sood U, Ponnusamy K, Dhingra GG, Anand S, Dua A, Singh M, Kumar R, Sengar M, Singh IK, Lal R) Microb Genom 2023 Apr;9(4)       10 Citations
3Association of Persistent Rubella Virus With Idiopathic Skin Granulomas in Clinically Immunocompetent Adults. (Wanat KA, Perelygina L, Chen MH, Hao L, Abernathy E, Bender NR, Shields BE, Wilson BD, Crosby D, Routes J, Samimi SS, Haun PL, Sokumbi O, Icenogle JP, Sullivan KE, Rosenbach M, Drolet BA) JAMA Dermatol 2022 Jun 01;158(6):626-633       31 Citations
1Mechanisms of SARS-CoV-2 neutralization by shark variable new antigen receptors elucidated through X-ray crystallography. (Ubah OC, Lake EW, Gunaratne GS, Gallant JP, Fernie M, Robertson AJ, Marchant JS, Bold TD, Langlois RA, Matchett WE, Thiede JM, Shi K, Yin L, Moeller NH, Banerjee S, Ferguson L, Kovaleva M, Porter AJ, Aihara H, LeBeau AM, Barelle CJ) Nat Commun 2021 Dec 16;12(1):7325       33 Citations
1Chronic cannabis smoking-enriched oral pathobiont drives behavioral changes, macrophage infiltration, and increases β-amyloid protein production in the brain. (Luo Z, Fitting S, Robinson C, Benitez A, Li M, Wu Y, Fu X, Amato D, Ning W, Funderburg N, Wang X, Zhou Z, Yu X, Wagner A, Cong X, Xu W, Maas K, Wolf BJ, Huang L, Yu J, Scott A, Mcrae-Clark A, Hamlett ED, Jiang W) EBioMedicine 2021 Dec;74:103701       19 Citations
1A multimodal cell census and atlas of the mammalian primary motor cortex. (BRAIN Initiative Cell Census Network (BICCN)) Nature 2021 Oct;598(7879):86-102       365 Citations
1Rapidly emerging SARS-CoV-2 B.1.1.7 sub-lineage in the United States of America with spike protein D178H and membrane protein V70L mutations. (Shen L, Bard JD, Triche TJ, Judkins AR, Biegel JA, Gai X) Emerg Microbes Infect 2021 Dec;10(1):1293-1299       16 Citations
1Betacoronaviruses genome analysis reveals evolution toward specific codons usage: Implications for SARS-CoV-2 mitigation strategies. (Lopes EN, Fonseca V, Frias D, Tosta S, Salgado Á, Assunção Vialle R, Paulo Eduardo TS, Barreto FK, Ariston de Azevedo V, Guarino M, Angeletti S, Ciccozzi M, Junior Alcantara LC, Giovanetti M) J Med Virol 2021 Sep;93(9):5630-5634       3 Citations
1Emerging variants of concern in SARS-CoV-2 membrane protein: a highly conserved target with potential pathological and therapeutic implications. (Shen L, Bard JD, Triche TJ, Judkins AR, Biegel JA, Gai X) Emerg Microbes Infect 2021 Dec;10(1):885-893       45 Citations
2Genomic analysis of a novel species Halomonas shambharensis isolated from hypersaline lake in Northwest India. (Jadhav K, Kushwaha B, Jadhav I, Shankar P, Geethadevi A, Kumar G, Mittal S, Sharma GP, Parashar M, Parashar D) Mol Biol Rep 2021 Feb;48(2):1045-1053       2 Citations
1Potential of avian and mammalian species A rotaviruses to reassort as explored by plasmid only-based reverse genetics. (Patzina-Mehling C, Falkenhagen A, Trojnar E, Gadicherla AK, Johne R) Virus Res 2020 Sep;286:198027       19 Citations
1Whole genome sequence analysis of cell culture-adapted rotavirus A strains from chicken. (Patzina-Mehling C, Falkenhagen A, Gadicherla AK, Grützke J, Tausch SH, Johne R) Infect Genet Evol 2020 Jul;81:104275       12 Citations
1Generation of Simian Rotavirus Reassortants with VP4- and VP7-Encoding Genome Segments from Human Strains Circulating in Africa Using Reverse Genetics. (Falkenhagen A, Patzina-Mehling C, Gadicherla AK, Strydom A, O'Neill HG, Johne R) Viruses 2020 Feb 11;12(2)       29 Citations
1Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia. (Savage SA, Viard M, O'hUigin C, Zhou W, Yeager M, Li SA, Wang T, Ramsuran V, Vince N, Vogt A, Hicks B, Burdett L, Chung C, Dean M, de Andrade KC, Freedman ND, Berndt SI, Rothman N, Lan Q, Cerhan JR, Slager SL, Zhang Y, Teras LR, Haagenson M, Chanock SJ, Spellman SR, Wang Y, Willis A, Askar M, Lee SJ, Carrington M, Gadalla SM) Am J Hum Genet 2020 Feb 06;106(2):264-271       30 Citations
1Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes. (Talwar C, Nagar S, Kumar R, Scaria J, Lal R, Negi RK) Sci Rep 2020 Jan 24;10(1):1151       106 Citations
1Gene copy number and function of the APL1 immune factor changed during Anopheles evolution. (Mitri C, Bischoff E, Eiglmeier K, Holm I, Dieme C, Brito-Fravallo E, Raz A, Zakeri S, Nejad MIK, Djadid ND, Vernick KD, Riehle MM) Parasit Vectors 2020 Jan 13;13(1):18       8 Citations
2Sequencing and analysis of globally obtained human parainfluenza viruses 1 and 3 genomes. (Bose ME, Shrivastava S, He J, Nelson MI, Bera J, Fedorova N, Halpin R, Town CD, Lorenzi HA, Amedeo P, Gupta N, Noyola DE, Videla C, Kok T, Buys A, Venter M, Vabret A, Cordey S, Henrickson KJ) PLoS One 2019;14(7):e0220057       23 Citations
1Betaine accumulation suppresses the de-novo synthesis of ectoine at a low osmotic concentration in Halomonas sp SBS 10, a bacterium with broad salinity tolerance. (Kushwaha B, Jadhav I, Verma HN, Geethadevi A, Parashar D, Jadhav K) Mol Biol Rep 2019 Oct;46(5):4779-4786       28 Citations
1Rat Genome Assemblies, Annotation, and Variant Repository. (Tutaj M, Smith JR, Bolton ER) Methods Mol Biol 2019;2018:43-70       6 Citations
1Locomotor correlates of the scapholunar of living and extinct carnivorans. (Dunn RH, Cooper C, Lemert J, Mironov N, Meachen JA) J Morphol 2019 Aug;280(8):1197-1206       10 Citations
1Phylogenetic and functional analysis of ADAMTS13 identifies highly conserved domains essential for allosteric regulation. (Muia J, Zhu J, Greco SC, Vanhoorelbeke K, Gupta G, Westfield LA, Sadler JE) Blood 2019 Apr 25;133(17):1899-1908       26 Citations
3Persistence of Schistosoma japonicum DNA in a Kidney-Liver Transplant Recipient. (Kron M, Gordon C, Bauers T, Lu Z, Mahatme S, Shah J, Saeian K, McManus DP) Am J Trop Med Hyg 2019 Mar;100(3):584-587       7 Citations
1Coalescing beneficial host and deleterious antiparasitic actions as an antischistosomal strategy. (Chan JD, Day TA, Marchant JS) Elife 2018 Jul 30;7       15 Citations
1Discovery and Biochemical Characterization of PlyP56, PlyN74, and PlyTB40-Bacillus Specific Endolysins. (Etobayeva I, Linden SB, Alem F, Harb L, Rizkalla L, Mosier PD, Johnson AA, Temple L, Hakami RM, Nelson DC) Viruses 2018 May 21;10(5)       29 Citations
1Characterization of the pixB gene in Xenorhabdus nematophila and discovery of a new gene family. (Lucas J, Goetsch M, Fischer M, Forst S) Microbiology (Reading) 2018 Apr;164(4):495-508       3 Citations
1Unique pharmacological properties of serotoninergic G-protein coupled receptors from cestodes. (Camicia F, Celentano AM, Johns ME, Chan JD, Maldonado L, Vaca H, Di Siervi N, Kamentezky L, Gamo AM, Ortega-Gutierrez S, Martin-Fontecha M, Davio C, Marchant JS, Rosenzvit MC) PLoS Negl Trop Dis 2018 Feb;12(2):e0006267       25 Citations
1The reintroduction of DENV-2 in 2011 in Panama and subsequent outbreak characteristic. (Díaz Y, Cisneros J, Guzmán H, Cordoba P, Carrera JP, Moreno B, Chen R, Mewa JC, García L, Cerezo L, da Rosa AT, Gundacker ND, Armién B, Weaver SC, Vasilakis N, López-Vergès S, Tesh R) Acta Trop 2018 Jan;177:58-65       5 Citations
1Mycobacterium grossiae sp. nov., a rapidly growing, scotochromogenic species isolated from human clinical respiratory and blood culture specimens. (Paniz-Mondolfi AE, Greninger AL, Ladutko L, Brown-Elliott BA, Vasireddy R, Jakubiec W, Vasireddy S, Wallace RJ Jr, Simmon KE, Dunn BE, Jackoway G, Vora SB, Quinn KK, Qin X, Campbell S) Int J Syst Evol Microbiol 2017 Nov;67(11):4345-4351       8 Citations
1Microbial taxonomy in the era of OMICS: application of DNA sequences, computational tools and techniques. (Mahato NK, Gupta V, Singh P, Kumari R, Verma H, Tripathi C, Rani P, Sharma A, Singhvi N, Sood U, Hira P, Kohli P, Nayyar N, Puri A, Bajaj A, Kumar R, Negi V, Talwar C, Khurana H, Nagar S, Sharma M, Mishra H, Singh AK, Dhingra G, Negi RK, Shakarad M, Singh Y, Lal R) Antonie Van Leeuwenhoek 2017 Oct;110(10):1357-1371       51 Citations
1Clinical Manifestations of Punta Toro Virus Species Complex Infections, Panama, 2009. (Gundacker ND, Carrera JP, Castillo M, Díaz Y, Valenzuela J, Tamhane A, Moreno B, Pascale JM, Tesh RB, López-Vergès S) Emerg Infect Dis 2017 May;23(5):872-874       15 Citations
1Fitness costs of symbiont switching using entomopathogenic nematodes as a model. (McMullen JG 2nd, Peterson BF, Forst S, Blair HG, Stock SP) BMC Evol Biol 2017 Apr 17;17(1):100       30 Citations
1Crystal structure analysis in Zn2+-bound state and biophysical characterization of CLas-ZnuA2. (Sharma N, Selvakumar P, Saini G, Warghane A, Ghosh DK, Sharma AK) Biochim Biophys Acta 2016 Dec;1864(12):1649-1657       13 Citations
1Genomic insights into the origin of farming in the ancient Near East. (Lazaridis I, Nadel D, Rollefson G, Merrett DC, Rohland N, Mallick S, Fernandes D, Novak M, Gamarra B, Sirak K, Connell S, Stewardson K, Harney E, Fu Q, Gonzalez-Fortes G, Jones ER, Roodenberg SA, Lengyel G, Bocquentin F, Gasparian B, Monge JM, Gregg M, Eshed V, Mizrahi AS, Meiklejohn C, Gerritsen F, Bejenaru L, Blüher M, Campbell A, Cavalleri G, Comas D, Froguel P, Gilbert E, Kerr SM, Kovacs P, Krause J, McGettigan D, Merrigan M, Merriwether DA, O'Reilly S, Richards MB, Semino O, Shamoon-Pour M, Stefanescu G, Stumvoll M, Tönjes A, Torroni A, Wilson JF, Yengo L, Hovhannisyan NA, Patterson N, Pinhasi R, Reich D) Nature 2016 Aug 25;536(7617):419-24       707 Citations
1A Requirement for Metamorphic Interconversion in the Antimicrobial Activity of Chemokine XCL1. (Nevins AM, Subramanian A, Tapia JL, Delgado DP, Tyler RC, Jensen DR, Ouellette AJ, Volkman BF) Biochemistry 2016 Jul 12;55(27):3784-93       17 Citations
1Myc-binding protein orthologue interacts with AKAP240 in the central pair apparatus of the Chlamydomonas flagella. (Rao VG, Sarafdar RB, Chowdhury TS, Sivadas P, Yang P, Dongre PM, D'Souza JS) BMC Cell Biol 2016 Jun 10;17(1):24       15 Citations
1Rv2744c Is a PspA Ortholog That Regulates Lipid Droplet Homeostasis and Nonreplicating Persistence in Mycobacterium tuberculosis. (Armstrong RM, Adams KL, Zilisch JE, Bretl DJ, Sato H, Anderson DM, Zahrt TC) J Bacteriol 2016 Jun 01;198(11):1645-1661       31 Citations
1Genetic Structure of a Local Population of the Anopheles gambiae Complex in Burkina Faso. (Markianos K, Bischoff E, Mitri C, Guelbeogo WM, Gneme A, Eiglmeier K, Holm I, Sagnon N, Vernick KD, Riehle MM) PLoS One 2016;11(1):e0145308       7 Citations
1The genome of the vervet (Chlorocebus aethiops sabaeus). (Warren WC, Jasinska AJ, García-Pérez R, Svardal H, Tomlinson C, Rocchi M, Archidiacono N, Capozzi O, Minx P, Montague MJ, Kyung K, Hillier LW, Kremitzki M, Graves T, Chiang C, Hughes J, Tran N, Huang Y, Ramensky V, Choi OW, Jung YJ, Schmitt CA, Juretic N, Wasserscheid J, Turner TR, Wiseman RW, Tuscher JJ, Karl JA, Schmitz JE, Zahn R, O'Connor DH, Redmond E, Nisbett A, Jacquelin B, Müller-Trutwin MC, Brenchley JM, Dione M, Antonio M, Schroth GP, Kaplan JR, Jorgensen MJ, Thomas GW, Hahn MW, Raney BJ, Aken B, Nag R, Schmitz J, Churakov G, Noll A, Stanyon R, Webb D, Thibaud-Nissen F, Nordborg M, Marques-Bonet T, Dewar K, Weinstock GM, Wilson RK, Freimer NB) Genome Res 2015 Dec;25(12):1921-33       74 Citations
1Sphingopyxis flava sp. nov., isolated from a hexachlorocyclohexane (HCH)-contaminated soil. (Verma H, Rani P, Kumar Singh A, Kumar R, Dwivedi V, Negi V, Lal R) Int J Syst Evol Microbiol 2015 Oct;65(10):3720-3726       21 Citations
1Xenorhabdus bovienii Strain Diversity Impacts Coevolution and Symbiotic Maintenance with Steinernema spp. Nematode Hosts. (Murfin KE, Lee MM, Klassen JL, McDonald BR, Larget B, Forst S, Stock SP, Currie CR, Goodrich-Blair H) mBio 2015 Jun 04;6(3):e00076       68 Citations
2Sequencing and analysis of globally obtained human respiratory syncytial virus A and B genomes. (Bose ME, He J, Shrivastava S, Nelson MI, Bera J, Halpin RA, Town CD, Lorenzi HA, Noyola DE, Falcone V, Gerna G, De Beenhouwer H, Videla C, Kok T, Venter M, Williams JV, Henrickson KJ) PLoS One 2015;10(3):e0120098       66 Citations
1Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways. (Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R) BMC Genomics 2014 Nov 23;15(1):1014       68 Citations
1Parapedobacter indicus sp. nov., isolated from hexachlorocyclohexane-contaminated soil. (Kumar R, Dwivedi V, Nayyar N, Verma H, Singh AK, Rani P, Rao DLN, Lal R) Int J Syst Evol Microbiol 2015 Jan;65(Pt 1):129-134       25 Citations
1Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi. (Jiang X, Peery A, Hall AB, Sharma A, Chen XG, Waterhouse RM, Komissarov A, Riehle MM, Shouche Y, Sharakhova MV, Lawson D, Pakpour N, Arensburger P, Davidson VL, Eiglmeier K, Emrich S, George P, Kennedy RC, Mane SP, Maslen G, Oringanje C, Qi Y, Settlage R, Tojo M, Tubio JM, Unger MF, Wang B, Vernick KD, Ribeiro JM, James AA, Michel K, Riehle MA, Luckhart S, Sharakhov IV, Tu Z) Genome Biol 2014 Sep 23;15(9):459       94 Citations
1Chemosensory regulation of a HEAT-repeat protein couples aggregation and sporulation in Myxococcus xanthus. (Darnell CL, Wilson JM, Tiwari N, Fuentes EJ, Kirby JR) J Bacteriol 2014 Sep;196(17):3160-8       10 Citations
1Human pegivirus RNA is found in multiple blood mononuclear cells in vivo and serum-derived viral RNA-containing particles are infectious in vitro. (Chivero ET, Bhattarai N, Rydze RT, Winters MA, Holodniy M, Stapleton JT) J Gen Virol 2014 Jun;95(Pt 6):1307-1319       73 Citations
1Functional organization of a multimodular bacterial chemosensory apparatus. (Moine A, Agrebi R, Espinosa L, Kirby JR, Zusman DR, Mignot T, Mauriello EM) PLoS Genet 2014 Mar;10(3):e1004164       26 Citations
1Pontibacter indicus sp. nov., isolated from hexachlorocyclohexane-contaminated soil. (Singh AK, Garg N, Lata P, Kumar R, Negi V, Vikram S, Lal R) Int J Syst Evol Microbiol 2014 Jan;64(Pt 1):254-259       34 Citations
1Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome. (Bhatt AS, Freeman SS, Herrera AF, Pedamallu CS, Gevers D, Duke F, Jung J, Michaud M, Walker BJ, Young S, Earl AM, Kostic AD, Ojesina AI, Hasserjian R, Ballen KK, Chen YB, Hobbs G, Antin JH, Soiffer RJ, Baden LR, Garrett WS, Hornick JL, Marty FM, Meyerson M) N Engl J Med 2013 Aug 08;369(6):517-28    
1Genome sequencing reveals loci under artificial selection that underlie disease phenotypes in the laboratory rat. (Atanur SS, Diaz AG, Maratou K, Sarkis A, Rotival M, Game L, Tschannen MR, Kaisaki PJ, Otto GW, Ma MC, Keane TM, Hummel O, Saar K, Chen W, Guryev V, Gopalakrishnan K, Garrett MR, Joe B, Citterio L, Bianchi G, McBride M, Dominiczak A, Adams DJ, Serikawa T, Flicek P, Cuppen E, Hubner N, Petretto E, Gauguier D, Kwitek A, Jacob H, Aitman TJ) Cell 2013 Aug 01;154(3):691-703       139 Citations
1Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses. (Jeanniard A, Dunigan DD, Gurnon JR, Agarkova IV, Kang M, Vitek J, Duncan G, McClung OW, Larsen M, Claverie JM, Van Etten JL, Blanc G) BMC Genomics 2013 Mar 08;14:158       79 Citations
1Characterization of a flatworm inositol (1,4,5) trisphosphate receptor (IP₃R) reveals a role in reproductive physiology. (Zhang D, Liu X, Chan JD, Marchant JS) Cell Calcium 2013;53(5-6):307-14       1 Citation
1Pontibacter ramchanderi sp. nov., isolated from hexachlorocyclohexane-contaminated pond sediment. (Singh AK, Garg N, Sangwan N, Negi V, Kumar R, Vikram S, Lal R) Int J Syst Evol Microbiol 2013 Aug;63(Pt 8):2829-2834       34 Citations
1Gene Ontology annotations and resources. (Gene Ontology Consortium, Blake JA, Dolan M, Drabkin H, Hill DP, Li N, Sitnikov D, Bridges S, Burgess S, Buza T, McCarthy F, Peddinti D, Pillai L, Carbon S, Dietze H, Ireland A, Lewis SE, Mungall CJ, Gaudet P, Chrisholm RL, Fey P, Kibbe WA, Basu S, Siegele DA, McIntosh BK, Renfro DP, Zweifel AE, Hu JC, Brown NH, Tweedie S, Alam-Faruque Y, Apweiler R, Auchinchloss A, Axelsen K, Bely B, Blatter M-, Bonilla C, Bouguerleret L, Boutet E, Breuza L, Bridge A, Chan WM, Chavali G, Coudert E, Dimmer E, Estreicher A, Famiglietti L, Feuermann M, Gos A, Gruaz-Gumowski N, Hieta R, Hinz C, Hulo C, Huntley R, James J, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, Martin MJ, Masson P, Mutowo-Muellenet P, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Porras Millán P, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Stutz A, Sundaram S, Tognolli M, Xenarios I, Foulgar R, Lomax J, Roncaglia P, Khodiyar VK, Lovering RC, Talmud PJ, Chibucos M, Giglio MG, Chang H-, Hunter S, McAnulla C, Mitchell A, Sangrador A, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall DM, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman T, Wang S-, Petri V, Lowry T, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hitz BC, Hong EL, Karra K, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Huala E, Mi H, Thomas PD, Chan J, Kishore R, Sternberg P, Van Auken K, Howe D, Westerfield M) Nucleic Acids Res 2013 Jan;41(Database issue):D530-5       494 Citations
2Genome sequencing and phylogenetic analysis of 39 human parainfluenza virus type 1 strains isolated from 1997-2010. (Beck ET, He J, Nelson MI, Bose ME, Fan J, Kumar S, Henrickson KJ) PLoS One 2012;7(9):e46048       22 Citations
1The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes. (Chaston JM, Suen G, Tucker SL, Andersen AW, Bhasin A, Bode E, Bode HB, Brachmann AO, Cowles CE, Cowles KN, Darby C, de Léon L, Drace K, Du Z, Givaudan A, Herbert Tran EE, Jewell KA, Knack JJ, Krasomil-Osterfeld KC, Kukor R, Lanois A, Latreille P, Leimgruber NK, Lipke CM, Liu R, Lu X, Martens EC, Marri PR, Médigue C, Menard ML, Miller NM, Morales-Soto N, Norton S, Ogier JC, Orchard SS, Park D, Park Y, Qurollo BA, Sugar DR, Richards GR, Rouy Z, Slominski B, Slominski K, Snyder H, Tjaden BC, van der Hoeven R, Welch RD, Wheeler C, Xiang B, Barbazuk B, Gaudriault S, Goodner B, Slater SC, Forst S, Goldman BS, Goodrich-Blair H) PLoS One 2011;6(11):e27909       173 Citations
1Maternal topoisomerase II alpha, not topoisomerase II beta, enables embryonic development of zebrafish top2a-/- mutants. (Sapetto-Rebow B, McLoughlin SC, O'Shea LC, O'Leary O, Willer JR, Alvarez Y, Collery R, O'Sullivan J, Van Eeden F, Hensey C, Kennedy BN) BMC Dev Biol 2011 Nov 23;11:71       19 Citations
1Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. (Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F, Earl AM, Ojesina AI, Jung J, Bass AJ, Tabernero J, Baselga J, Liu C, Shivdasani RA, Ogino S, Birren BW, Huttenhower C, Garrett WS, Meyerson M) Genome Res 2012 Feb;22(2):292-8       1705 Citations
2Whole genome sequencing and evolutionary analysis of human respiratory syncytial virus A and B from Milwaukee, WI 1998-2010. (Rebuffo-Scheer C, Bose M, He J, Khaja S, Ulatowski M, Beck ET, Fan J, Kumar S, Nelson MI, Henrickson KJ) PLoS One 2011;6(10):e25468       61 Citations
1The potter's wheel: the host's role in sculpting its microbiota. (Bevins CL, Salzman NH) Cell Mol Life Sci 2011 Nov;68(22):3675-85       109 Citations
1Mycobacterium tuberculosis Rv0899 defines a family of membrane proteins widespread in nitrogen-fixing bacteria. (Marassi FM) Proteins 2011 Oct;79(10):2946-55       4 Citations
1Phylogenomic evidence for a myxococcal contribution to the mitochondrial fatty acid beta-oxidation. (Schlüter A, Ruiz-Trillo I, Pujol A) PLoS One 2011;6(7):e21989       6 Citations
1Virulence characteristics and genetic affinities of multiple drug resistant uropathogenic Escherichia coli from a semi urban locality in India. (Jadhav S, Hussain A, Devi S, Kumar A, Parveen S, Gandham N, Wieler LH, Ewers C, Ahmed N) PLoS One 2011 Mar 25;6(3):e18063       100 Citations
1Loss of Lrp2 in zebrafish disrupts pronephric tubular clearance but not forebrain development. (Kur E, Christa A, Veth KN, Gajera CR, Andrade-Navarro MA, Zhang J, Willer JR, Gregg RG, Abdelilah-Seyfried S, Bachmann S, Link BA, Hammes A, Willnow TE) Dev Dyn 2011 Jun;240(6):1567-77       36 Citations
1Phylogeography of the spring and fall waves of the H1N1/09 pandemic influenza virus in the United States. (Nelson MI, Tan Y, Ghedin E, Wentworth DE, St George K, Edelman L, Beck ET, Fan J, Lam TT, Kumar S, Spiro DJ, Simonsen L, Viboud C, Holmes EC, Henrickson KJ, Musser JM) J Virol 2011 Jan;85(2):828-34       55 Citations
1Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus. (Ogier JC, Calteau A, Forst S, Goodrich-Blair H, Roche D, Rouy Z, Suen G, Zumbihl R, Givaudan A, Tailliez P, Médigue C, Gaudriault S) BMC Genomics 2010 Oct 15;11:568       45 Citations
1Cabin1 expression suggests roles in neuronal development. (Hammond DR, Udvadia AJ) Dev Dyn 2010 Sep;239(9):2443-51       20 Citations
1Placement of attine ant-associated Pseudonocardia in a global Pseudonocardia phylogeny (Pseudonocardiaceae, Actinomycetales): a test of two symbiont-association models. (Mueller UG, Ishak H, Lee JC, Sen R, Gutell RR) Antonie Van Leeuwenhoek 2010 Aug;98(2):195-212       36 Citations
1Persistence of adenovirus nucleic acids in nasopharyngeal secretions: a diagnostic conundrum. (Kalu SU, Loeffelholz M, Beck E, Patel JA, Revai K, Fan J, Henrickson KJ, Chonmaitree T) Pediatr Infect Dis J 2010 Aug;29(8):746-50       70 Citations
1Chlamydomonas mutants display reversible deficiencies in flagellar beating and axonemal assembly. (Wei M, Sivadas P, Owen HA, Mitchell DR, Yang P) Cytoskeleton (Hoboken) 2010 Feb;67(2):71-80       15 Citations
2Enteric defensins are essential regulators of intestinal microbial ecology. (Salzman NH, Hung K, Haribhai D, Chu H, Karlsson-Sjöberg J, Amir E, Teggatz P, Barman M, Hayward M, Eastwood D, Stoel M, Zhou Y, Sodergren E, Weinstock GM, Bevins CL, Williams CB, Bos NA) Nat Immunol 2010 Jan;11(1):76-83       1012 Citations
1Essential requirement for two-pore channel 1 in NAADP-mediated calcium signaling. (Brailoiu E, Churamani D, Cai X, Schrlau MG, Brailoiu GC, Gao X, Hooper R, Boulware MJ, Dun NJ, Marchant JS, Patel S) J Cell Biol 2009 Jul 27;186(2):201-9       357 Citations
1Archaeal aIF2B interacts with eukaryotic translation initiation factors eIF2alpha and eIF2Balpha: Implications for aIF2B function and eIF2B regulation. (Dev K, Santangelo TJ, Rothenburg S, Neculai D, Dey M, Sicheri F, Dever TE, Reeve JN, Hinnebusch AG) J Mol Biol 2009 Sep 25;392(3):701-22       28 Citations
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