Medical College of Wisconsin
CTSIResearch InformaticsREDCap

Publications indexed to the term Genome, Viral

FacultyTitle
1Hepatitis C virus NS3 helicase contributes to (-) strand RNA synthesis. (Ralfs P, Bressanelli S, Günter LM, Gabel A, Rothhaar P, Price KJ, Tubiana T, Munschauer M, Frick DN, Lohmann V) Nat Commun 2025 Aug 27;16(1):8006       3 Citations
1Differential severity of SARS-CoV-2 variant infections in children and adults with COVID-19. (Brazer N, Servellita V, Jin C, Foresythe A, Oseguera M, Nguyen J, Sumimoto N, Huh HJ, Feder A, Bhattacharya S, Bhaskar S, Sotomayor-Gonzalez A, Saldhi P, Choi C, Li GX, Gopchandani K, Tippett A, Hsiao HM, Gonzalez MD, Gulick D, Kraft C, Kasinathan V, Wang YFW, Chen PY, Flores-Vazquez J, Patel K, Odom John AR, Spinler JK, Devaraj S, Annapragada AV, Luna RA, Gai X, Dien Bard J, Rostad CA, Planet PJ, Lazar AA, Chiu CY) J Clin Virol 2025 Oct;180:105833       5 Citations
3Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation. (Porter VL, Ng M, O'Neill K, MacLennan S, Corbett RD, Culibrk L, Hamadeh Z, Iden M, Schmidt R, Tsaih SW, Nakisige C, Origa M, Orem J, Chang G, Fan J, Nip KM, Akbari V, Chan SK, Hopkins J, Moore RA, Chuah E, Mungall KL, Mungall AJ, Birol I, Jones SJM, Rader JS, Marra MA) Genome Res 2025 Apr 14;35(4):653-670       11 Citations
1Molecularly generated rat hepatitis E virus strains from human and rat show efficient replication in a human hepatoma cell line. (Panajotov J, Falkenhagen A, Gadicherla AK, Johne R) Virus Res 2024 Jun;344:199364       10 Citations
1Computational modeling of protracted HCMV replication using genome substrates and protein temporal profiles. (Monti CE, Mokry RL, Schumacher ML, Dash RK, Terhune SS) Proc Natl Acad Sci U S A 2022 Aug 30;119(35):e2201787119       9 Citations
1Betacoronaviruses genome analysis reveals evolution toward specific codons usage: Implications for SARS-CoV-2 mitigation strategies. (Lopes EN, Fonseca V, Frias D, Tosta S, Salgado Á, Assunção Vialle R, Paulo Eduardo TS, Barreto FK, Ariston de Azevedo V, Guarino M, Angeletti S, Ciccozzi M, Junior Alcantara LC, Giovanetti M) J Med Virol 2021 Sep;93(9):5630-5634       3 Citations
1Increased viral variants in children and young adults with impaired humoral immunity and persistent SARS-CoV-2 infection: A consecutive case series. (Truong TT, Ryutov A, Pandey U, Yee R, Goldberg L, Bhojwani D, Aguayo-Hiraldo P, Pinsky BA, Pekosz A, Shen L, Boyd SD, Wirz OF, Röltgen K, Bootwalla M, Maglinte DT, Ostrow D, Ruble D, Han JH, Biegel JA, Li M, Huang C, Sahoo MK, Pannaraj PS, O'Gorman M, Judkins AR, Gai X, Dien Bard J) EBioMedicine 2021 May;67:103355       117 Citations
1Hepatitis E virus persists in the ejaculate of chronically infected men. (Horvatits T, Wißmann JE, Johne R, Groschup MH, Gadicherla AK, Schulze Zur Wiesch J, Eiden M, Todt D, Reimer R, Dähnert L, Schöbel A, Horvatits K, Lübke R, Wolschke C, Ayuk F, Rybczynski M, Lohse AW, Addo MM, Herker E, Lütgehetmann M, Steinmann E, Pischke S) J Hepatol 2021 Jul;75(1):55-63       40 Citations
1Potential of avian and mammalian species A rotaviruses to reassort as explored by plasmid only-based reverse genetics. (Patzina-Mehling C, Falkenhagen A, Trojnar E, Gadicherla AK, Johne R) Virus Res 2020 Sep;286:198027       20 Citations
1Whole genome sequence analysis of cell culture-adapted rotavirus A strains from chicken. (Patzina-Mehling C, Falkenhagen A, Gadicherla AK, Grützke J, Tausch SH, Johne R) Infect Genet Evol 2020 Jul;81:104275       12 Citations
1Generation of Simian Rotavirus Reassortants with VP4- and VP7-Encoding Genome Segments from Human Strains Circulating in Africa Using Reverse Genetics. (Falkenhagen A, Patzina-Mehling C, Gadicherla AK, Strydom A, O'Neill HG, Johne R) Viruses 2020 Feb 11;12(2)       32 Citations
2Sequencing and analysis of globally obtained human parainfluenza viruses 1 and 3 genomes. (Bose ME, Shrivastava S, He J, Nelson MI, Bera J, Fedorova N, Halpin R, Town CD, Lorenzi HA, Amedeo P, Gupta N, Noyola DE, Videla C, Kok T, Buys A, Venter M, Vabret A, Cordey S, Henrickson KJ) PLoS One 2019;14(7):e0220057       27 Citations
1Chewing the Fat: The Conserved Ability of DNA Viruses to Hijack Cellular Lipid Metabolism. (Lange PT, Lagunoff M, Tarakanova VL) Viruses 2019 Jan 29;11(2)       40 Citations
2Establishment of a lethal aged mouse model of human respiratory syncytial virus infection. (Zhang K, Li C, Luo YS, Wen L, Yuan S, Wang D, Ho-Yin Wong B, Zhao X, Chiu MC, Ye ZW, Sun Z, Zhao H, Zhang X, Hu M, Yang D, Shuai H, Wang Y, He J, Bose ME, Henrickson KJ, Huang JD, Zheng B, Chu H, Zhou J) Antiviral Res 2019 Jan;161:125-133       14 Citations
1Limited Variation in BK Virus T-Cell Epitopes Revealed by Next-Generation Sequencing. (Sahoo MK, Tan SK, Chen SF, Kapusinszky B, Concepcion KR, Kjelson L, Mallempati K, Farina HM, Fernández-Viña M, Tyan D, Grimm PC, Anderson MW, Concepcion W, Pinsky BA) J Clin Microbiol 2015 Oct;53(10):3226-33       19 Citations
2Sequencing and analysis of globally obtained human respiratory syncytial virus A and B genomes. (Bose ME, He J, Shrivastava S, Nelson MI, Bera J, Halpin RA, Town CD, Lorenzi HA, Noyola DE, Falcone V, Gerna G, De Beenhouwer H, Videla C, Kok T, Venter M, Williams JV, Henrickson KJ) PLoS One 2015;10(3):e0120098       66 Citations
1Copackaging of multiple adeno-associated viral vectors in a single production step. (Doerfler PA, Byrne BJ, Clément N) Hum Gene Ther Methods 2014 Oct;25(5):269-76       3 Citations
1Coronaviruses lacking exoribonuclease activity are susceptible to lethal mutagenesis: evidence for proofreading and potential therapeutics. (Smith EC, Blanc H, Surdel MC, Vignuzzi M, Denison MR) PLoS Pathog 2013 Aug;9(8):e1003565       369 Citations
1Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses. (Jeanniard A, Dunigan DD, Gurnon JR, Agarkova IV, Kang M, Vitek J, Duncan G, McClung OW, Larsen M, Claverie JM, Van Etten JL, Blanc G) BMC Genomics 2013 Mar 08;14:158       81 Citations
2Genome sequencing and phylogenetic analysis of 39 human parainfluenza virus type 1 strains isolated from 1997-2010. (Beck ET, He J, Nelson MI, Bose ME, Fan J, Kumar S, Henrickson KJ) PLoS One 2012;7(9):e46048       22 Citations
1Paramecium bursaria chlorella virus 1 proteome reveals novel architectural and regulatory features of a giant virus. (Dunigan DD, Cerny RL, Bauman AT, Roach JC, Lane LC, Agarkova IV, Wulser K, Yanai-Balser GM, Gurnon JR, Vitek JC, Kronschnabel BJ, Jeanniard A, Blanc G, Upton C, Duncan GA, McClung OW, Ma F, Van Etten JL) J Virol 2012 Aug;86(16):8821-34       61 Citations
2Whole genome sequencing and evolutionary analysis of human respiratory syncytial virus A and B from Milwaukee, WI 1998-2010. (Rebuffo-Scheer C, Bose M, He J, Khaja S, Ulatowski M, Beck ET, Fan J, Kumar S, Nelson MI, Henrickson KJ) PLoS One 2011;6(10):e25468       62 Citations
1PathSeq: software to identify or discover microbes by deep sequencing of human tissue. (Kostic AD, Ojesina AI, Pedamallu CS, Jung J, Verhaak RG, Getz G, Meyerson M) Nat Biotechnol 2011 May;29(5):393-6       278 Citations
1Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution. (Pope WH, Jacobs-Sera D, Russell DA, Peebles CL, Al-Atrache Z, Alcoser TA, Alexander LM, Alfano MB, Alford ST, Amy NE, Anderson MD, Anderson AG, Ang AA, Ares M Jr, Barber AJ, Barker LP, Barrett JM, Barshop WD, Bauerle CM, Bayles IM, Belfield KL, Best AA, Borjon A Jr, Bowman CA, Boyer CA, Bradley KW, Bradley VA, Broadway LN, Budwal K, Busby KN, Campbell IW, Campbell AM, Carey A, Caruso SM, Chew RD, Cockburn CL, Cohen LB, Corajod JM, Cresawn SG, Davis KR, Deng L, Denver DR, Dixon BR, Ekram S, Elgin SC, Engelsen AE, English BE, Erb ML, Estrada C, Filliger LZ, Findley AM, Forbes L, Forsyth MH, Fox TM, Fritz MJ, Garcia R, George ZD, Georges AE, Gissendanner CR, Goff S, Goldstein R, Gordon KC, Green RD, Guerra SL, Guiney-Olsen KR, Guiza BG, Haghighat L, Hagopian GV, Harmon CJ, Harmson JS, Hartzog GA, Harvey SE, He S, He KJ, Healy KE, Higinbotham ER, Hildebrandt EN, Ho JH, Hogan GM, Hohenstein VG, Holz NA, Huang VJ, Hufford EL, Hynes PM, Jackson AS, Jansen EC, Jarvik J, Jasinto PG, Jordan TC, Kasza T, Katelyn MA, Kelsey JS, Kerrigan LA, Khaw D, Kim J, Knutter JZ, Ko CC, Larkin GV, Laroche JR, Latif A, Leuba KD, Leuba SI, Lewis LO, Loesser-Casey KE, Long CA, Lopez AJ, Lowery N, Lu TQ, Mac V, Masters IR, McCloud JJ, McDonough MJ, Medenbach AJ, Menon A, Miller R, Morgan BK, Ng PC, Nguyen E, Nguyen KT, Nguyen ET, Nicholson KM, Parnell LA, Peirce CE, Perz AM, Peterson LJ, Pferdehirt RE, Philip SV, Pogliano K, Pogliano J, Polley T, Puopolo EJ, Rabinowitz HS, Resiss MJ, Rhyan CN, Robinson YM, Rodriguez LL, Rose AC, Rubin JD, Ruby JA, Saha MS, Sandoz JW, Savitskaya J, Schipper DJ, Schnitzler CE, Schott AR, Segal JB, Shaffer CD, Sheldon KE, Shepard EM, Shepardson JW, Shroff MK, Simmons JM, Simms EF, Simpson BM, Sinclair KM, Sjoholm RL, Slette IJ, Spaulding BC, Straub CL, Stukey J, Sughrue T, Tang TY, Tatyana LM, Taylor SB, Taylor BJ, Temple LM, Thompson JV, Tokarz MP, Trapani SE, Troum AP, Tsay J, Tubbs AT, Walton JM, Wang DH, Wang H, Warner JR, Weisser EG, Wendler SC, Weston-Hafer KA, Whelan HM, Williamson KE, Willis AN, Wirtshafter HS, Wong TW, Wu P, Yang Yj, Yee BC, Zaidins DA, Zhang B, Zúniga MY, Hendrix RW, Hatfull GF) PLoS One 2011 Jan 27;6(1):e16329       130 Citations
1Monitoring helicase activity with molecular beacons. (Belon CA, Frick DN) Biotechniques 2008 Oct;45(4):433-40, 442       60 Citations
1Reflections on the interpretation of heterogeneity and strain differences based on very limited PCR sequence data from Kaposi's sarcoma-associated herpesvirus genomes. (Zong JC, Arav-Boger R, Alcendor DJ, Hayward GS) J Clin Virol 2007 Sep;40(1):1-8       20 Citations
1Human cytomegalovirus UL38 protein blocks apoptosis. (Terhune S, Torigoi E, Moorman N, Silva M, Qian Z, Shenk T, Yu D) J Virol 2007 Apr;81(7):3109-23       144 Citations
1Human papillomaviruses target the double-stranded RNA protein kinase pathway. (Hebner CM, Wilson R, Rader J, Bidder M, Laimins LA) J Gen Virol 2006 Nov;87(Pt 11):3183-3193       61 Citations
1Tracking the prevalence of transmitted antiretroviral drug-resistant HIV-1: a decade of experience. (Shet A, Berry L, Mohri H, Mehandru S, Chung C, Kim A, Jean-Pierre P, Hogan C, Simon V, Boden D, Markowitz M) J Acquir Immune Defic Syndr 2006 Apr 01;41(4):439-46       161 Citations
1Hepatitis C virus subgenomic replicon requires an active NS3 RNA helicase. (Lam AM, Frick DN) J Virol 2006 Jan;80(1):404-11       116 Citations
1Possible role of human herpesvirus 8 in the lymphoproliferative disorders in common variable immunodeficiency. (Wheat WH, Cool CD, Morimoto Y, Rai PR, Kirkpatrick CH, Lindenbaum BA, Bates CA, Ellison MC, Serls AE, Brown KK, Routes JM) J Exp Med 2005 Aug 15;202(4):479-84       153 Citations
1Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource. (Lefkowitz EJ, Upton C, Changayil SS, Buck C, Traktman P, Buller RM) Nucleic Acids Res 2005 Jan 01;33(Database issue):D311-6       56 Citations
1Genetic analysis of the vaccinia virus I6 telomere-binding protein uncovers a key role in genome encapsidation. (Grubisha O, Traktman P) J Virol 2003 Oct;77(20):10929-42       47 Citations
2Monitoring and modulation of Epstein-Barr virus loads in pediatric transplant patients. (Orentas RJ, Schauer DW Jr, Ellis FW, Walczak J, Casper JT, Margolis DA) Pediatr Transplant 2003 Aug;7(4):305-14       41 Citations
1Early polyadenylation signals of human papillomavirus type 31 negatively regulate capsid gene expression. (Terhune SS, Hubert WG, Thomas JT, Laimins LA) J Virol 2001 Sep;75(17):8147-57       41 Citations
1The vaccinia virus A4OR gene product is a nonstructural, type II membrane glycoprotein that is expressed at the cell surface. (Wilcock D, Duncan SA, Traktman P, Zhang WH, Smith GL) J Gen Virol 1999 Aug;80 ( Pt 8):2137-2148       38 Citations