Medical College of Wisconsin
CTSICores SearchResearch InformaticsREDCap

Publications indexed to the term Gene Expression Profiling

FacultyTitle
1Prediction of survival of HPV16-negative, p16-negative oral cavity cancer patients using a 13-gene signature: A multicenter study using FFPE samples. (Chen C, Lohavanichbutr P, Zhang Y, Houck JR, Upton MP, Abedi-Ardekani B, Agudo A, Ahrens W, Alemany L, Anantharaman D, Conway DI, Futran ND, Holcatova I, Günther K, Hansen BT, Healy CM, Itani D, Kjaerheim K, Monroe MM, Thomson PJ, Witt BL, Nakoneshny S, Peterson LA, Schwartz SM, Zarins KR, Hashibe M, Brennan P, Rozek LS, Wolf G, Dort JC, Wang P) Oral Oncol 2020 01;100:104487    
2CXCR5+PD-1+ follicular helper CD8 T cells control B cell tolerance. (Chen Y, Yu M, Zheng Y, Fu G, Xin G, Zhu W, Luo L, Burns R, Li QZ, Dent AL, Zhu N, Cui W, Malherbe L, Wen R, Wang D) Nat Commun 2019 09 27;10(1):4415       6 Citations
1Synergistic Genetic Interactions between Pkhd1 and Pkd1 Result in an ARPKD-Like Phenotype in Murine Models. (Olson RJ, Hopp K, Wells H, Smith JM, Furtado J, Constans MM, Escobar DL, Geurts AM, Torres VE, Harris PC) J Am Soc Nephrol 2019 11;30(11):2113-2127       5 Citations
1Abrupt involution induces inflammation, estrogenic signaling, and hyperplasia linking lack of breastfeeding with increased risk of breast cancer. (Basree MM, Shinde N, Koivisto C, Cuitino M, Kladney R, Zhang J, Stephens J, Palettas M, Zhang A, Kim HK, Acero-Bedoya S, Trimboli A, Stover DG, Ludwig T, Ganju R, Weng D, Shields P, Freudenheim J, Leone GW, Sizemore GM, Majumder S, Ramaswamy B) Breast Cancer Res 2019 07 17;21(1):80       5 Citations
7The p52 isoform of SHC1 is a key driver of breast cancer initiation. (Wright KD, Miller BS, El-Meanawy S, Tsaih SW, Banerjee A, Geurts AM, Sheinin Y, Sun Y, Kalyanaraman B, Rui H, Flister MJ, Sorokin A) Breast Cancer Res 2019 06 15;21(1):74       2 Citations
1Regionally specified human pluripotent stem cell-derived astrocytes exhibit different molecular signatures and functional properties. (Bradley RA, Shireman J, McFalls C, Choi J, Canfield SG, Dong Y, Liu K, Lisota B, Jones JR, Petersen A, Bhattacharyya A, Palecek SP, Shusta EV, Kendziorski C, Zhang SC) Development 2019 07 08;146(13)       7 Citations
3Neuronatin is a modifier of estrogen receptor-positive breast cancer incidence and outcome. (Plasterer C, Tsaih SW, Peck AR, Chervoneva I, O'Meara C, Sun Y, Lemke A, Murphy D, Smith J, Ran S, Kovatich AJ, Hooke JA, Shriver CD, Hu H, Mitchell EP, Bergom C, Joshi A, Auer P, Prokop J, Rui H, Flister MJ) Breast Cancer Res Treat 2019 Aug;177(1):77-91    
2Diagnosing and Managing Sepsis by Probing the Host Response to Infection: Advances, Opportunities, and Challenges. (Gunsolus IL, Sweeney TE, Liesenfeld O, Ledeboer NA) J Clin Microbiol 2019 07;57(7)       6 Citations
2Identification of a Rat Mammary Tumor Risk Locus That Is Syntenic with the Commonly Amplified 8q12.1 and 8q22.1 Regions in Human Breast Cancer Patients. (Plasterer C, Tsaih SW, Lemke A, Schilling R, Dwinell M, Rau A, Auer P, Rui H, Flister MJ) G3 (Bethesda) 2019 05 07;9(5):1739-1743       2 Citations
2Mature IgDlow/- B cells maintain tolerance by promoting regulatory T cell homeostasis. (Ray A, Khalil MI, Pulakanti KL, Burns RT, Gurski CJ, Basu S, Wang D, Rao S, Dittel BN) Nat Commun 2019 01 14;10(1):190       8 Citations
1Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response. (Haberman Y, Karns R, Dexheimer PJ, Schirmer M, Somekh J, Jurickova I, Braun T, Novak E, Bauman L, Collins MH, Mo A, Rosen MJ, Bonkowski E, Gotman N, Marquis A, Nistel M, Rufo PA, Baker SS, Sauer CG, Markowitz J, Pfefferkorn MD, Rosh JR, Boyle BM, Mack DR, Baldassano RN, Shah S, Leleiko NS, Heyman MB, Grifiths AM, Patel AS, Noe JD, Aronow BJ, Kugathasan S, Walters TD, Gibson G, Thomas SD, Mollen K, Shen-Orr S, Huttenhower C, Xavier RJ, Hyams JS, Denson LA) Nat Commun 2019 01 03;10(1):38       23 Citations
1Exploring drivers of gene expression in the Cancer Genome Atlas. (Rau A, Flister M, Rui H, Auer PL) Bioinformatics 2019 01 01;35(1):62-68       8 Citations
2Microarray analysis of long non-coding RNA and mRNA expression profiles in diabetic cardiomyopathy using human induced pluripotent stem cell-derived cardiomyocytes. (Pant T, Mishra MK, Bai X, Ge ZD, Bosnjak ZJ, Dhanasekaran A) Diab Vasc Dis Res 2019 01;16(1):57-68       4 Citations
1Upregulation of FOXM1 leads to diminished drug sensitivity in myeloma. (Gu C, Jing X, Holman C, Sompallae R, Zhan F, Tricot G, Yang Y, Janz S) BMC Cancer 2018 Nov 21;18(1):1152       5 Citations
1MetaOmics: analysis pipeline and browser-based software suite for transcriptomic meta-analysis. (Ma T, Huo Z, Kuo A, Zhu L, Fang Z, Zeng X, Lin CW, Liu S, Wang L, Liu P, Rahman T, Chang LC, Kim S, Li J, Park Y, Song C, Oesterreich S, Sibille E, Tseng GC) Bioinformatics 2019 05 01;35(9):1597-1599       8 Citations
2Signaling network between the dysregulated expression of microRNAs and mRNAs in propofol-induced developmental neurotoxicity in mice. (Jiang C, Logan S, Yan Y, Inagaki Y, Arzua T, Ma P, Lu S, Bosnjak ZJ, Bai X) Sci Rep 2018 09 21;8(1):14172       6 Citations
1Robust interferon signature and suppressed tissue repair gene expression in synovial tissue from patients with postinfectious, Borrelia burgdorferi-induced Lyme arthritis. (Lochhead RB, Arvikar SL, Aversa JM, Sadreyev RI, Strle K, Steere AC) Cell Microbiol 2019 02;21(2):e12954       5 Citations
1The impact of pharmacokinetic gene profiles across human cancers. (Zimmermann MT, Therneau TM, Kocher JA) BMC Cancer 2018 May 21;18(1):577       1 Citation
1A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. (Berger AC, Korkut A, Kanchi RS, Hegde AM, Lenoir W, Liu W, Liu Y, Fan H, Shen H, Ravikumar V, Rao A, Schultz A, Li X, Sumazin P, Williams C, Mestdagh P, Gunaratne PH, Yau C, Bowlby R, Robertson AG, Tiezzi DG, Wang C, Cherniack AD, Godwin AK, Kuderer NM, Rader JS, Zuna RE, Sood AK, Lazar AJ, Ojesina AI, Adebamowo C, Adebamowo SN, Baggerly KA, Chen TW, Chiu HS, Lefever S, Liu L, MacKenzie K, Orsulic S, Roszik J, Shelley CS, Song Q, Vellano CP, Wentzensen N, Cancer Genome Atlas Research Network, Weinstein JN, Mills GB, Levine DA, Akbani R) Cancer Cell 2018 04 09;33(4):690-705.e9       124 Citations
5Transcriptomic analysis reveals inflammatory and metabolic pathways that are regulated by renal perfusion pressure in the outer medulla of Dahl-S rats. (Evans LC, Dayton A, Yang C, Liu P, Kurth T, Ahn KW, Komas S, Stingo FC, Laud PW, Vannucci M, Liang M, Cowley AW Jr) Physiol Genomics 2018 06 01;50(6):440-447       3 Citations
1Withaferin A Associated Differential Regulation of Inflammatory Cytokines. (Dubey S, Yoon H, Cohen MS, Nagarkatti P, Nagarkatti M, Karan D) Front Immunol 2018;9:195    
1A hedgehog pathway-dependent gene signature is associated with poor clinical outcomes in Luminal A breast cancer. (Rudolph M, Sizemore ST, Lu Y, Teng KY, Basree MM, Reinbolt R, Timmers CD, Leone G, Ostrowski MC, Majumder S, Ramaswamy B) Breast Cancer Res Treat 2018 Jun;169(3):457-467       5 Citations
1Clinical and Genomic Correlates of Neutrophil Reactive Oxygen Species Production in Pediatric Patients With Crohn's Disease. (Denson LA, Jurickova I, Karns R, Shaw KA, Cutler DJ, Okou DT, Dodd A, Quinn K, Mondal K, Aronow BJ, Haberman Y, Linn A, Price A, Bezold R, Lake K, Jackson K, Walters TD, Griffiths A, Baldassano RN, Noe JD, Hyams JS, Crandall WV, Kirschner BS, Heyman MB, Snapper S, Guthery SL, Dubinsky MC, Leleiko NS, Otley AR, Xavier RJ, Stevens C, Daly MJ, Zwick ME, Kugathasan S) Gastroenterology 2018 06;154(8):2097-2110       15 Citations
1P300 Acetyltransferase Mediates Stiffness-Induced Activation of Hepatic Stellate Cells Into Tumor-Promoting Myofibroblasts. (Dou C, Liu Z, Tu K, Zhang H, Chen C, Yaqoob U, Wang Y, Wen J, van Deursen J, Sicard D, Tschumperlin D, Zou H, Huang WC, Urrutia R, Shah VH, Kang N) Gastroenterology 2018 06;154(8):2209-2221.e14       38 Citations
1Long ncRNA Landscape in the Ileum of Treatment-Naive Early-Onset Crohn Disease. (Haberman Y, BenShoshan M, Di Segni A, Dexheimer PJ, Braun T, Weiss B, Walters TD, Baldassano RN, Noe JD, Markowitz J, Rosh J, Heyman MB, Griffiths AM, Crandall WV, Mack DR, Baker SS, Kellermayer R, Patel A, Otley A, Steiner SJ, Gulati AS, Guthery SL, LeLeiko N, Moulton D, Kirschner BS, Snapper S, Avivi C, Barshack I, Oliva-Hemker M, Cohen SA, Keljo DJ, Ziring D, Anikster Y, Aronow B, Hyams JS, Kugathasan S, Denson LA) Inflamm Bowel Dis 2018 01 18;24(2):346-360       22 Citations
1Transcriptomic signatures of cellular and humoral immune responses in older adults after seasonal influenza vaccination identified by data-driven clustering. (Voigt EA, Grill DE, Zimmermann MT, Simon WL, Ovsyannikova IG, Kennedy RB, Poland GA) Sci Rep 2018 01 15;8(1):739       11 Citations
4Modulation of the diet and gastrointestinal microbiota normalizes systemic inflammation and β-cell chemokine expression associated with autoimmune diabetes susceptibility. (Henschel AM, Cabrera SM, Kaldunski ML, Jia S, Geoffrey R, Roethle MF, Lam V, Chen YG, Wang X, Salzman NH, Hessner MJ) PLoS One 2018;13(1):e0190351       6 Citations
1Ottogi Inhibits Wnt/β-catenin Signaling by Regulating Cell Membrane Trafficking of Frizzled8. (Kim HT, Lee MS, Jeong YM, Ro H, Kim DI, Shin YH, Kim JE, Hwang KS, Choi JH, Bahn M, Lee JJ, Lee SH, Bae YK, Lee JS, Choi JK, Kim NS, Yeo CY, Kim CH) Sci Rep 2017 10 16;7(1):13278       2 Citations
1Gene Expression Profiling and Heterogeneity of Nonspecific Orbital Inflammation Affecting the Lacrimal Gland. (Rosenbaum JT, Choi D, Harrington CA, Wilson DJ, Grossniklaus HE, Sibley CH, Salek SS, Ng JD, Dailey RA, Steele EA, Hayek B, Craven CM, Edward DP, Maktabi AMY, Al Hussain H, White VA, Dolman PJ, Czyz CN, Foster JA, Harris GJ, Bee YS, Tse DT, Alabiad CR, Dubovy SR, Kazim M, Selva D, Yeatts RP, Korn BS, Kikkawa DO, Silkiss RZ, Sivak-Callcott JA, Stauffer P, Planck SR) JAMA Ophthalmol 2017 11 01;135(11):1156-1162       4 Citations
1Clinical utility of a 377 gene custom next-generation sequencing epilepsy panel. (Bevilacqua J, Hesse A, Cormier B, Davey J, Patel D, Shankar K, Reddi HV) J Genet 2017 Sep;96(4):681-685       9 Citations
3Identification of a serum-induced transcriptional signature associated with metastatic cervical cancer. (Palatnik A, Ye S, Kendziorski C, Iden M, Zigman JS, Hessner MJ, Rader JS) PLoS One 2017;12(8):e0181242       7 Citations
1Platelets reduce anoikis and promote metastasis by activating YAP1 signaling. (Haemmerle M, Taylor ML, Gutschner T, Pradeep S, Cho MS, Sheng J, Lyons YM, Nagaraja AS, Dood RL, Wen Y, Mangala LS, Hansen JM, Rupaimoole R, Gharpure KM, Rodriguez-Aguayo C, Yim SY, Lee JS, Ivan C, Hu W, Lopez-Berestein G, Wong ST, Karlan BY, Levine DA, Liu J, Afshar-Kharghan V, Sood AK) Nat Commun 2017 08 21;8(1):310       60 Citations
1Transcription factor ZNF148 is a negative regulator of human muscle differentiation. (Bakke J, Wright WC, Zamora AE, Ong SS, Wang YM, Hoyer JD, Brewer CT, Thomas PG, Chen T) Sci Rep 2017 08 15;7(1):8138       2 Citations
1Transcriptional risk scores link GWAS to eQTLs and predict complications in Crohn's disease. (Marigorta UM, Denson LA, Hyams JS, Mondal K, Prince J, Walters TD, Griffiths A, Noe JD, Crandall WV, Rosh JR, Mack DR, Kellermayer R, Heyman MB, Baker SS, Stephens MC, Baldassano RN, Markowitz JF, Kim MO, Dubinsky MC, Cho J, Aronow BJ, Kugathasan S, Gibson G) Nat Genet 2017 Oct;49(10):1517-1521       43 Citations
1Frequency of mononuclear diploid cardiomyocytes underlies natural variation in heart regeneration. (Patterson M, Barske L, Van Handel B, Rau CD, Gan P, Sharma A, Parikh S, Denholtz M, Huang Y, Yamaguchi Y, Shen H, Allayee H, Crump JG, Force TI, Lien CL, Makita T, Lusis AJ, Kumar SR, Sucov HM) Nat Genet 2017 Sep;49(9):1346-1353       95 Citations
1Cytomegalovirus Late Protein pUL31 Alters Pre-rRNA Expression and Nuclear Organization during Infection. (Westdorp KN, Sand A, Moorman NJ, Terhune SS) J Virol 2017 09 15;91(18)       6 Citations
1Discovery of Stromal Regulatory Networks that Suppress Ras-Sensitized Epithelial Cell Proliferation. (Liu H, Dowdle JA, Khurshid S, Sullivan NJ, Bertos N, Rambani K, Mair M, Daniel P, Wheeler E, Tang X, Toth K, Lause M, Harrigan ME, Eiring K, Sullivan C, Sullivan MJ, Chang SW, Srivastava S, Conway JS, Kladney R, McElroy J, Bae S, Lu Y, Tofigh A, Saleh SMI, Fernandez SA, Parvin JD, Coppola V, Macrae ER, Majumder S, Shapiro CL, Yee LD, Ramaswamy B, Hallett M, Ostrowski MC, Park M, Chamberlin HM, Leone G) Dev Cell 2017 05 22;41(4):392-407.e6       10 Citations
1ETS Related Gene mediated Androgen Receptor Aggregation and Endoplasmic Reticulum Stress in Prostate Cancer Development. (Sreenath TL, Macalindong SS, Mikhalkevich N, Sharad S, Mohamed A, Young D, Borbiev T, Xavier C, Gupta R, Jamal M, Babcock K, Tan SH, Nevalainen MT, Dobi A, Petrovics G, Sesterhenn IA, Rosner IL, Bieberich CJ, Nelson P, Vasioukhin V, Srivastava S) Sci Rep 2017 04 24;7(1):1109       13 Citations
1Overexpression of EZH2 in multiple myeloma is associated with poor prognosis and dysregulation of cell cycle control. (Pawlyn C, Bright MD, Buros AF, Stein CK, Walters Z, Aronson LI, Mirabella F, Jones JR, Kaiser MF, Walker BA, Jackson GH, Clarke PA, Bergsagel PL, Workman P, Chesi M, Morgan GJ, Davies FE) Blood Cancer J 2017 03 31;7(3):e549       34 Citations
2Gene expression profiling of patient-derived pancreatic cancer xenografts predicts sensitivity to the BET bromodomain inhibitor JQ1: implications for individualized medicine efforts. (Bian B, Bigonnet M, Gayet O, Loncle C, Maignan A, Gilabert M, Moutardier V, Garcia S, Turrini O, Delpero JR, Giovannini M, Grandval P, Gasmi M, Ouaissi M, Secq V, Poizat F, Nicolle R, Blum Y, Marisa L, Rubis M, Raoul JL, Bradner JE, Qi J, Lomberk G, Urrutia R, Saul A, Dusetti N, Iovanna J) EMBO Mol Med 2017 04;9(4):482-497       28 Citations
1Longitudinal analysis of hepatic transcriptome and serum metabolome demonstrates altered lipid metabolism following the onset of hyperglycemia in spontaneously diabetic biobreeding rats. (Regnell SE, Hessner MJ, Jia S, Åkesson L, Stenlund H, Moritz T, La Torre D, Lernmark Å) PLoS One 2017;12(2):e0171372       3 Citations
1Investigation of coordination and order in transcription regulation of innate and adaptive immunity genes in type 1 diabetes. (Gao S, Wolanyk N, Chen Y, Jia S, Hessner MJ, Wang X) BMC Med Genomics 2017 01 31;10(1):7       3 Citations
5Cancer cell chemokines direct chemotaxis of activated stellate cells in pancreatic ductal adenocarcinoma. (Roy I, Boyle KA, Vonderhaar EP, Zimmerman NP, Gorse E, Mackinnon AC, Hwang RF, Franco-Barraza J, Cukierman E, Tsai S, Evans DB, Dwinell MB) Lab Invest 2017 03;97(3):302-317       12 Citations
1Tgif1 and Tgif2 Repress Expression of the RabGAP Evi5l. (Anderson AE, Taniguchi K, Hao Y, Melhuish TA, Shah A, Turner SD, Sutherland AE, Wotton D) Mol Cell Biol 2017 03 01;37(5)       9 Citations
5Bronchial airway gene expression signatures in mouse lung squamous cell carcinoma and their modulation by cancer chemopreventive agents. (Xiong D, Pan J, Zhang Q, Szabo E, Miller MS, Lubet RA, You M, Wang Y) Oncotarget 2017 Mar 21;8(12):18885-18900    
1Dickkopf-1 promotes hematopoietic regeneration via direct and niche-mediated mechanisms. (Himburg HA, Doan PL, Quarmyne M, Yan X, Sasine J, Zhao L, Hancock GV, Kan J, Pohl KA, Tran E, Chao NJ, Harris JR, Chute JP) Nat Med 2017 01;23(1):91-99       29 Citations
1Targeted myocardial gene expression in failing hearts by RNA sequencing. (Dhar K, Moulton AM, Rome E, Qiu F, Kittrell J, Raichlin E, Zolty R, Um JY, Moulton MJ, Basma H, Anderson DR, Eudy JD, Lowes BD) J Transl Med 2016 11 25;14(1):327       7 Citations
1Role of CTGF in Sensitivity to Hyperthermia in Ovarian and Uterine Cancers. (Hatakeyama H, Wu SY, Lyons YA, Pradeep S, Wang W, Huang Q, Court KA, Liu T, Nie S, Rodriguez-Aguayo C, Shen F, Huang Y, Hisamatsu T, Mitamura T, Jennings N, Shim J, Dorniak PL, Mangala LS, Petrillo M, Petyuk VA, Schepmoes AA, Shukla AK, Torres-Lugo M, Lee JS, Rodland KD, Fagotti A, Lopez-Berestein G, Li C, Sood AK) Cell Rep 2016 11 01;17(6):1621-1631       9 Citations
1E2F-2 Promotes Nuclear Condensation and Enucleation of Terminally Differentiated Erythroblasts. (Swartz KL, Wood SN, Murthy T, Ramirez O, Qin G, Pillai MM, Rao S, Minella AC) Mol Cell Biol 2017 01 01;37(1)       9 Citations
1Growth and maturation of heart valves leads to changes in endothelial cell distribution, impaired function, decreased metabolism and reduced cell proliferation. (Anstine LJ, Bobba C, Ghadiali S, Lincoln J) J Mol Cell Cardiol 2016 Nov;100:72-82       12 Citations
2The cohesin subunit Rad21 is a negative regulator of hematopoietic self-renewal through epigenetic repression of Hoxa7 and Hoxa9. (Fisher JB, Peterson J, Reimer M, Stelloh C, Pulakanti K, Gerbec ZJ, Abel AM, Strouse JM, Strouse C, McNulty M, Malarkannan S, Crispino JD, Milanovich S, Rao S) Leukemia 2017 03;31(3):712-719       22 Citations
1Whole Transcriptome Profiling Identifies CD93 and Other Plasma Cell Survival Factor Genes Associated with Measles-Specific Antibody Response after Vaccination. (Haralambieva IH, Zimmermann MT, Ovsyannikova IG, Grill DE, Oberg AL, Kennedy RB, Poland GA) PLoS One 2016;11(8):e0160970       11 Citations
1Sickle cell anemia mice develop a unique cardiomyopathy with restrictive physiology. (Bakeer N, James J, Roy S, Wansapura J, Shanmukhappa SK, Lorenz JN, Osinska H, Backer K, Huby AC, Shrestha A, Niss O, Fleck R, Quinn CT, Taylor MD, Purevjav E, Aronow BJ, Towbin JA, Malik P) Proc Natl Acad Sci U S A 2016 08 30;113(35):E5182-91       38 Citations
1Predisposition to treatment response in major depressive episode: A peripheral blood gene coexpression network analysis. (Belzeaux R, Lin CW, Ding Y, Bergon A, Ibrahim EC, Turecki G, Tseng G, Sibille E) J Psychiatr Res 2016 10;81:119-26       17 Citations
2Asymmetric Cancer Hallmarks in Breast Tumors on Different Sides of the Body. (Campoy EM, Laurito SR, Branham MT, Urrutia G, Mathison A, Gago F, Orozco J, Urrutia R, Mayorga LS, Roqué M) PLoS One 2016;11(7):e0157416       3 Citations
1Transcriptional signatures of influenza A/H1N1-specific IgG memory-like B cell response in older individuals. (Haralambieva IH, Ovsyannikova IG, Kennedy RB, Zimmermann MT, Grill DE, Oberg AL, Poland GA) Vaccine 2016 07 25;34(34):3993-4002       17 Citations
1MetaKTSP: a meta-analytic top scoring pair method for robust cross-study validation of omics prediction analysis. (Kim S, Lin CW, Tseng GC) Bioinformatics 2016 07 01;32(13):1966-73       15 Citations
1Transcription Profile in Sporadic Multiple Symmetric Lipomatosis Reveals Differential Expression at the Level of Adipose Tissue-Derived Stem Cells. (Prantl L, Schreml J, Gehmert S, Klein S, Bai X, Zeitler K, Schreml S, Alt E, Gehmert S, Felthaus O) Plast Reconstr Surg 2016 Apr;137(4):1181-90       11 Citations
4Mechanosensory and ATP Release Deficits following Keratin14-Cre-Mediated TRPA1 Deletion Despite Absence of TRPA1 in Murine Keratinocytes. (Zappia KJ, Garrison SR, Palygin O, Weyer AD, Barabas ME, Lawlor MW, Staruschenko A, Stucky CL) PLoS One 2016;11(3):e0151602       13 Citations
2Ndufc2 Gene Inhibition Is Associated With Mitochondrial Dysfunction and Increased Stroke Susceptibility in an Animal Model of Complex Human Disease. (Rubattu S, Di Castro S, Schulz H, Geurts AM, Cotugno M, Bianchi F, Maatz H, Hummel O, Falak S, Stanzione R, Marchitti S, Scarpino S, Giusti B, Kura A, Gensini GF, Peyvandi F, Mannucci PM, Rasura M, Sciarretta S, Dwinell MR, Hubner N, Volpe M) J Am Heart Assoc 2016 Feb 17;5(2)    
1Variants in TRIM22 That Affect NOD2 Signaling Are Associated With Very-Early-Onset Inflammatory Bowel Disease. (Li Q, Lee CH, Peters LA, Mastropaolo LA, Thoeni C, Elkadri A, Schwerd T, Zhu J, Zhang B, Zhao Y, Hao K, Dinarzo A, Hoffman G, Kidd BA, Murchie R, Al Adham Z, Guo C, Kotlarz D, Cutz E, Walters TD, Shouval DS, Curran M, Dobrin R, Brodmerkel C, Snapper SB, Klein C, Brumell JH, Hu M, Nanan R, Snanter-Nanan B, Wong M, Le Deist F, Haddad E, Roifman CM, Deslandres C, Griffiths AM, Gaskin KJ, Uhlig HH, Schadt EE, Muise AM) Gastroenterology 2016 05;150(5):1196-1207       45 Citations
1Plasma extracellular RNA profiles in healthy and cancer patients. (Yuan T, Huang X, Woodcock M, Du M, Dittmar R, Wang Y, Tsai S, Kohli M, Boardman L, Patel T, Wang L) Sci Rep 2016 Jan 20;6:19413       112 Citations
1Comprehensive evaluation of AmpliSeq transcriptome, a novel targeted whole transcriptome RNA sequencing methodology for global gene expression analysis. (Li W, Turner A, Aggarwal P, Matter A, Storvick E, Arnett DK, Broeckel U) BMC Genomics 2015 Dec 16;16:1069       37 Citations
1Comprehensive multiplatform biomarker analysis of 350 hepatocellular carcinomas identifies potential novel therapeutic options. (Ang C, Miura JT, Gamblin TC, He R, Xiu J, Millis SZ, Gatalica Z, Reddy SK, Yee NS, Abou-Alfa GK) J Surg Oncol 2016 Jan;113(1):55-61       18 Citations
1The Role of the Immune Response in the Pathogenesis of Thyroid Eye Disease: A Reassessment. (Rosenbaum JT, Choi D, Wong A, Wilson DJ, Grossniklaus HE, Harrington CA, Dailey RA, Ng JD, Steele EA, Czyz CN, Foster JA, Tse D, Alabiad C, Dubovy S, Parekh PK, Harris GJ, Kazim M, Patel PJ, White VA, Dolman PJ, Edward DP, Alkatan HM, Al Hussain H, Selva D, Yeatts RP, Korn BS, Kikkawa DO, Stauffer P, Planck SR) PLoS One 2015;10(9):e0137654       7 Citations
4Low Socioeconomic Status, Adverse Gene Expression Profiles, and Clinical Outcomes in Hematopoietic Stem Cell Transplant Recipients. (Knight JM, Rizzo JD, Logan BR, Wang T, Arevalo JM, Ma J, Cole SW) Clin Cancer Res 2016 Jan 01;22(1):69-78       29 Citations
5Gene Expression in Experimental Aortic Coarctation and Repair: Candidate Genes for Therapeutic Intervention? (LaDisa JF Jr, Bozdag S, Olson J, Ramchandran R, Kersten JR, Eddinger TJ) PLoS One 2015;10(7):e0133356       3 Citations
1Orbital pseudotumor can be a localized form of granulomatosis with polyangiitis as revealed by gene expression profiling. (Rosenbaum JT, Choi D, Wilson DJ, Grossniklaus HE, Harrington CA, Sibley CH, Dailey RA, Ng JD, Steele EA, Czyz CN, Foster JA, Tse D, Alabiad C, Dubovy S, Parekh PK, Harris GJ, Kazim M, Patel PJ, White VA, Dolman PJ, Korn BS, Kikkawa DO, Edward DP, Alkatan HM, al-Hussain H, Yeatts RP, Selva D, Stauffer P, Planck SR) Exp Mol Pathol 2015 Oct;99(2):271-8       17 Citations
1Production of IL-10 by CD4(+) regulatory T cells during the resolution of infection promotes the maturation of memory CD8(+) T cells. (Laidlaw BJ, Cui W, Amezquita RA, Gray SM, Guan T, Lu Y, Kobayashi Y, Flavell RA, Kleinstein SH, Craft J, Kaech SM) Nat Immunol 2015 Aug;16(8):871-9       98 Citations
1Nebulin deficiency in adult muscle causes sarcomere defects and muscle-type-dependent changes in trophicity: novel insights in nemaline myopathy. (Li F, Buck D, De Winter J, Kolb J, Meng H, Birch C, Slater R, Escobar YN, Smith JE 3rd, Yang L, Konhilas J, Lawlor MW, Ottenheijm C, Granzier HL) Hum Mol Genet 2015 Sep 15;24(18):5219-33       34 Citations
1Microarray Determination of the Expression of Drug Transporters in Humans and Animal Species Used for the Investigation of Nasal Absorption. (Al-Ghabeish M, Scheetz T, Assem M, Donovan MD) Mol Pharm 2015 Aug 03;12(8):2742-54       13 Citations
1HTR7 Mediates Serotonergic Acute and Chronic Itch. (Morita T, McClain SP, Batia LM, Pellegrino M, Wilson SR, Kienzler MA, Lyman K, Olsen AS, Wong JF, Stucky CL, Brem RB, Bautista DM) Neuron 2015 Jul 01;87(1):124-38       70 Citations
3deGPS is a powerful tool for detecting differential expression in RNA-sequencing studies. (Chu C, Fang Z, Hua X, Yang Y, Chen E, Cowley AW Jr, Liang M, Liu P, Lu Y) BMC Genomics 2015 Jun 13;16:455       10 Citations
1Fibrosis, gene expression and orbital inflammatory disease. (Rosenbaum JT, Choi D, Wilson DJ, Grossniklaus HE, Harrington CA, Dailey RA, Ng JD, Steele EA, Czyz CN, Foster JA, Tse D, Alabiad C, Dubovy S, Parekh P, Harris GJ, Kazim M, Patel P, White V, Dolman P, Edward DP, Alkatan H, Al Hussain H, Selva D, Yeatts P, Korn B, Kikkawa D, Stauffer P, Planck SR) Br J Ophthalmol 2015 Oct;99(10):1424-9       10 Citations
2Structure-Based Screen Identifies a Potent Small Molecule Inhibitor of Stat5a/b with Therapeutic Potential for Prostate Cancer and Chronic Myeloid Leukemia. (Liao Z, Gu L, Vergalli J, Mariani SA, De Dominici M, Lokareddy RK, Dagvadorj A, Purushottamachar P, McCue PA, Trabulsi E, Lallas CD, Gupta S, Ellsworth E, Blackmon S, Ertel A, Fortina P, Leiby B, Xia G, Rui H, Hoang DT, Gomella LG, Cingolani G, Njar V, Pattabiraman N, Calabretta B, Nevalainen MT) Mol Cancer Ther 2015 Aug;14(8):1777-93       30 Citations
1Epigenetics and miRNA as predictive markers and targets for lung cancer chemotherapy. (El-Awady RA, Hersi F, Al-Tunaiji H, Saleh EM, Abdel-Wahab AH, Al Homssi A, Suhail M, El-Serafi A, Al-Tel T) Cancer Biol Ther 2015;16(7):1056-70       29 Citations
2MicroRNA-135b Regulates Leucine Zipper Tumor Suppressor 1 in Cutaneous Squamous Cell Carcinoma. (Olasz EB, Seline LN, Schock AM, Duncan NE, Lopez A, Lazar J, Flister MJ, Lu Y, Liu P, Sokumbi O, Harwood CA, Proby CM, Neuburg M, Lazarova Z) PLoS One 2015;10(5):e0125412       18 Citations
1Parallel Gene Expression Changes in Sarcoidosis Involving the Lacrimal Gland, Orbital Tissue, or Blood. (Rosenbaum JT, Choi D, Wilson DJ, Grossniklaus HE, Harrington CA, Sibley CH, Dailey RA, Ng JD, Steele EA, Czyz CN, Foster JA, Tse D, Alabiad C, Dubovy S, Parekh P, Harris GJ, Kazim M, Patel P, White V, Dolman P, Korn BS, Kikkawa D, Edward DP, Alkatan H, Al-Hussain H, Yeatts RP, Selva D, Stauffer P, Planck SR) JAMA Ophthalmol 2015 Jul;133(7):770-7       12 Citations
1Hypermethylation of BDNF and SST Genes in the Orbital Frontal Cortex of Older Individuals: A Putative Mechanism for Declining Gene Expression with Age. (McKinney BC, Lin CW, Oh H, Tseng GC, Lewis DA, Sibille E) Neuropsychopharmacology 2015 Oct;40(11):2604-13       16 Citations
1DOT1L inhibits SIRT1-mediated epigenetic silencing to maintain leukemic gene expression in MLL-rearranged leukemia. (Chen CW, Koche RP, Sinha AU, Deshpande AJ, Zhu N, Eng R, Doench JG, Xu H, Chu SH, Qi J, Wang X, Delaney C, Bernt KM, Root DE, Hahn WC, Bradner JE, Armstrong SA) Nat Med 2015 Apr;21(4):335-43       109 Citations
2Tumor profiling of gastric and esophageal carcinoma reveal different treatment options. (Miura JT, Xiu J, Thomas J, George B, Carron BR, Tsai S, Johnston FM, Turaga KK, Gamblin TC) Cancer Biol Ther 2015;16(5):764-9       16 Citations
1SPARCoC: a new framework for molecular pattern discovery and cancer gene identification. (Ma S, Johnson D, Ashby C, Xiong D, Cramer CL, Moore JH, Zhang S, Huang X) PLoS One 2015;10(3):e0117135       6 Citations
1Aberrant activation of signal transducer and activator of transcription-3 (STAT3) signaling in endometriosis. (Kim BG, Yoo JY, Kim TH, Shin JH, Langenheim JF, Ferguson SD, Fazleabas AT, Young SL, Lessey BA, Jeong JW) Hum Reprod 2015 May;30(5):1069-78       41 Citations
2Mesenchymal condensation-dependent accumulation of collagen VI stabilizes organ-specific cell fates during embryonic tooth formation. (Mammoto T, Mammoto A, Jiang A, Jiang E, Hashmi B, Ingber DE) Dev Dyn 2015 Jun;244(6):713-23       9 Citations
1Transcriptional profiling at whole population and single cell levels reveals somatosensory neuron molecular diversity. (Chiu IM, Barrett LB, Williams EK, Strochlic DE, Lee S, Weyer AD, Lou S, Bryman GS, Roberson DP, Ghasemlou N, Piccoli C, Ahat E, Wang V, Cobos EJ, Stucky CL, Ma Q, Liberles SD, Woolf CJ) Elife 2014 Dec 19;3       108 Citations
5Maternal diet during gestation and lactation modifies the severity of salt-induced hypertension and renal injury in Dahl salt-sensitive rats. (Geurts AM, Mattson DL, Liu P, Cabacungan E, Skelton MM, Kurth TM, Yang C, Endres BT, Klotz J, Liang M, Cowley AW Jr) Hypertension 2015 Feb;65(2):447-55       39 Citations
1Genetic interference with peroxisome proliferator-activated receptor γ in smooth muscle enhances myogenic tone in the cerebrovasculature via A Rho kinase-dependent mechanism. (De Silva TM, Ketsawatsomkron P, Pelham C, Sigmund CD, Faraci FM) Hypertension 2015 Feb;65(2):345-51       13 Citations
1Estrogen receptor expression is high but is of lower intensity in tubular carcinoma than in well-differentiated invasive ductal carcinoma. (Jorns JM, Thomas DG, Healy PN, Daignault S, Vickery TL, Snider JE, Mardis ER, Davies SR, Ellis MJ, Visscher DW) Arch Pathol Lab Med 2014 Nov;138(11):1507-13    
1RNA expression profiling of human iPSC-derived cardiomyocytes in a cardiac hypertrophy model. (Aggarwal P, Turner A, Matter A, Kattman SJ, Stoddard A, Lorier R, Swanson BJ, Arnett DK, Broeckel U) PLoS One 2014;9(9):e108051       34 Citations
1Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature. (Haberman Y, Tickle TL, Dexheimer PJ, Kim MO, Tang D, Karns R, Baldassano RN, Noe JD, Rosh J, Markowitz J, Heyman MB, Griffiths AM, Crandall WV, Mack DR, Baker SS, Huttenhower C, Keljo DJ, Hyams JS, Kugathasan S, Walters TD, Aronow B, Xavier RJ, Gevers D, Denson LA) J Clin Invest 2014 Aug;124(8):3617-33       221 Citations
1Conserved recurrent gene mutations correlate with pathway deregulation and clinical outcomes of lung adenocarcinoma in never-smokers. (Sun Z, Wang L, Eckloff BW, Deng B, Wang Y, Wampfler JA, Jang J, Wieben ED, Jen J, You M, Yang P) BMC Med Genomics 2014 Jun 04;7:32       32 Citations
1Genomic profiling of intrahepatic cholangiocarcinoma: refining prognosis and identifying therapeutic targets. (Zhu AX, Borger DR, Kim Y, Cosgrove D, Ejaz A, Alexandrescu S, Groeschl RT, Deshpande V, Lindberg JM, Ferrone C, Sempoux C, Yau T, Poon R, Popescu I, Bauer TW, Gamblin TC, Gigot JF, Anders RA, Pawlik TM) Ann Surg Oncol 2014 Nov;21(12):3827-34       79 Citations
1An independent study of a gene expression classifier (Afirma) in the evaluation of cytologically indeterminate thyroid nodules. (McIver B, Castro MR, Morris JC, Bernet V, Smallridge R, Henry M, Kosok L, Reddi H) J Clin Endocrinol Metab 2014 Nov;99(11):4069-77       142 Citations
1Outcomes in patients with relapsed or refractory multiple myeloma in a phase I study of everolimus in combination with lenalidomide. (Yee AJ, Hari P, Marcheselli R, Mahindra AK, Cirstea DD, Scullen TA, Burke JN, Rodig SJ, Hideshima T, Laubach JP, Ghobrial IM, Schlossman RL, Munshi NC, Anderson KC, Weller EA, Richardson PG, Raje NS) Br J Haematol 2014 Aug;166(3):401-9       28 Citations
5Characterization of biological pathways associated with a 1.37 Mbp genomic region protective of hypertension in Dahl S rats. (Cowley AW Jr, Moreno C, Jacob HJ, Peterson CB, Stingo FC, Ahn KW, Liu P, Vannucci M, Laud PW, Reddy P, Lazar J, Evans L, Yang C, Kurth T, Liang M) Physiol Genomics 2014 Jun 01;46(11):398-410       16 Citations
1A conserved BDNF, glutamate- and GABA-enriched gene module related to human depression identified by coexpression meta-analysis and DNA variant genome-wide association studies. (Chang LC, Jamain S, Lin CW, Rujescu D, Tseng GC, Sibille E) PLoS One 2014;9(3):e90980       42 Citations
1Diubiquitin (Ubd) is a susceptibility gene for virus-triggered autoimmune diabetes in rats. (Cort L, Habib M, Eberwine RA, Hessner MJ, Mordes JP, Blankenhorn EP) Genes Immun 2014 Apr-May;15(3):168-75       6 Citations
1Expression profiling of the RPE in zebrafish smarca4 mutant revealed altered signals that potentially affect RPE and retinal differentiation. (Zhang L, Ma P, Collery R, Trowbridge S, Zhang M, Zhong W, Leung YF) Mol Vis 2014;20:56-72       4 Citations
1Integrated metagenomic and metatranscriptomic analyses of microbial communities in the meso- and bathypelagic realm of north pacific ocean. (Wu J, Gao W, Johnson RH, Zhang W, Meldrum DR) Mar Drugs 2013 Oct 11;11(10):3777-801       18 Citations
1Identification of candidate B-lymphoma genes by cross-species gene expression profiling. (Tompkins VS, Han SS, Olivier A, Syrbu S, Bair T, Button A, Jacobus L, Wang Z, Lifton S, Raychaudhuri P, Morse HC 3rd, Weiner G, Link B, Smith BJ, Janz S) PLoS One 2013;8(10):e76889       5 Citations
2Mmp17b is essential for proper neural crest cell migration in vivo. (Leigh NR, Schupp MO, Li K, Padmanabhan V, Gastonguay A, Wang L, Chun CZ, Wilkinson GA, Ramchandran R) PLoS One 2013;8(10):e76484       23 Citations
5Characteristics of microRNAs enriched in specific cell types and primary tissue types in solid organs. (Kriegel AJ, Liu Y, Liu P, Baker MA, Hodges MR, Hua X, Liang M) Physiol Genomics 2013 Dec 01;45(23):1144-56       17 Citations
2Concordant effects of aromatase inhibitors on gene expression in ER+ Rat and human mammary cancers and modulation of the proteins coded by these genes. (Lu Y, You M, Ghazoui Z, Liu P, Vedell PT, Wen W, Bode AM, Grubbs CJ, Lubet RA) Cancer Prev Res (Phila) 2013 Nov;6(11):1151-61       8 Citations
1Ets2 in tumor fibroblasts promotes angiogenesis in breast cancer. (Wallace JA, Li F, Balakrishnan S, Cantemir-Stone CZ, Pecot T, Martin C, Kladney RD, Sharma SM, Trimboli AJ, Fernandez SA, Yu L, Rosol TJ, Stromberg PC, Lesurf R, Hallett M, Park M, Leone G, Ostrowski MC) PLoS One 2013;8(8):e71533       18 Citations
1Genomic analysis of stress response against arsenic in Caenorhabditis elegans. (Sahu SN, Lewis J, Patel I, Bozdag S, Lee JH, Sprando R, Cinar HN) PLoS One 2013;8(7):e66431    
1Antagonistic regulation by the transcription factors C/EBPα and MITF specifies basophil and mast cell fates. (Qi X, Hong J, Chaves L, Zhuang Y, Chen Y, Wang D, Chabon J, Graham B, Ohmori K, Li Y, Huang H) Immunity 2013 Jul 25;39(1):97-110       66 Citations
1Signaling through hepatocellular A2B adenosine receptors dampens ischemia and reperfusion injury of the liver. (Zimmerman MA, Grenz A, Tak E, Kaplan M, Ridyard D, Brodsky KS, Mandell MS, Kam I, Eltzschig HK) Proc Natl Acad Sci U S A 2013 Jul 16;110(29):12012-7    
1Global profiling of prolactin-modulated transcripts in breast cancer in vivo. (Sato T, Tran TH, Peck AR, Liu C, Ertel A, Lin J, Neilson LM, Rui H) Mol Cancer 2013 Jun 12;12:59       23 Citations
1Functional genomic assessment of phosgene-induced acute lung injury in mice. (Leikauf GD, Concel VJ, Bein K, Liu P, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA Jr, Upadhyay S, Cario C, Di YP, Vuga LJ, Kostem E, Eskin E, You M, Kaminski N, Prows DR, Knoell DL, Fabisiak JP) Am J Respir Cell Mol Biol 2013 Sep;49(3):368-83       14 Citations
1Genome-wide microRNA expression profiling in idiopathic non-obstructive azoospermia: significant up-regulation of miR-141, miR-429 and miR-7-1-3p. (Wu W, Qin Y, Li Z, Dong J, Dai J, Lu C, Guo X, Zhao Y, Zhu Y, Zhang W, Hang B, Sha J, Shen H, Xia Y, Hu Z, Wang X) Hum Reprod 2013 Jul;28(7):1827-36       62 Citations
1A new method for stranded whole transcriptome RNA-seq. (Miller DF, Yan PS, Buechlein A, Rodriguez BA, Yilmaz AS, Goel S, Lin H, Collins-Burow B, Rhodes LV, Braun C, Pradeep S, Rupaimoole R, Dalkilic M, Sood AK, Burow ME, Tang H, Huang TH, Liu Y, Rusch DB, Nephew KP) Methods 2013 Sep 15;63(2):126-34       32 Citations
1Genome-wide associations of signaling pathways in glioblastoma multiforme. (Wuchty S, Vazquez A, Bozdag S, Bauer PO) BMC Med Genomics 2013 Mar 28;6:11       3 Citations
1Profiling bortezomib resistance identifies secondary therapies in a mouse myeloma model. (Stessman HA, Baughn LB, Sarver A, Xia T, Deshpande R, Mansoor A, Walsh SA, Sunderland JJ, Dolloff NG, Linden MA, Zhan F, Janz S, Myers CL, Van Ness BG) Mol Cancer Ther 2013 Jun;12(6):1140-50       45 Citations
1A competitive infection model of hematogenously disseminated candidiasis in mice redefines the role of Candida albicans IRS4 in pathogenesis. (Raman SB, Nguyen MH, Cheng S, Badrane H, Iczkowski KA, Wegener M, Gaffen SL, Mitchell AP, Clancy CJ) Infect Immun 2013 May;81(5):1430-8       6 Citations
1QTL-based association analyses reveal novel genes influencing pleiotropy of metabolic syndrome (MetS). (Zhang Y, Kent JW Jr, Olivier M, Ali O, Broeckel U, Abdou RM, Dyer TD, Comuzzie A, Curran JE, Carless MA, Rainwater DL, Göring HH, Blangero J, Kissebah AH) Obesity (Silver Spring) 2013 Oct;21(10):2099-111       5 Citations
1Evolution of the Stx2-encoding prophage in persistent bovine Escherichia coli O157:H7 strains. (Park D, Stanton E, Ciezki K, Parrell D, Bozile M, Pike D, Forst SA, Jeong KC, Ivanek R, Döpfer D, Kaspar CW) Appl Environ Microbiol 2013 Mar;79(5):1563-72       17 Citations
1Human induced pluripotent stem cell-derived models to investigate human cytomegalovirus infection in neural cells. (D'Aiuto L, Di Maio R, Heath B, Raimondi G, Milosevic J, Watson AM, Bamne M, Parks WT, Yang L, Lin B, Miki T, Mich-Basso JD, Arav-Boger R, Sibille E, Sabunciyan S, Yolken R, Nimgaonkar V) PLoS One 2012;7(11):e49700       40 Citations
1Molecular control of axon growth: insights from comparative gene profiling and high-throughput screening. (Blackmore MG) Int Rev Neurobiol 2012;105:39-70       22 Citations
1Increased dietary intake of vitamin A promotes aortic valve calcification in vivo. (Huk DJ, Hammond HL, Kegechika H, Lincoln J) Arterioscler Thromb Vasc Biol 2013 Feb;33(2):285-93       20 Citations
5Increased proliferative cells in the medullary thick ascending limb of the loop of Henle in the Dahl salt-sensitive rat. (Yang C, Stingo FC, Ahn KW, Liu P, Vannucci M, Laud PW, Skelton M, O'Connor P, Kurth T, Ryan RP, Moreno C, Tsaih SW, Patone G, Hummel O, Jacob HJ, Liang M, Cowley AW Jr) Hypertension 2013 Jan;61(1):208-15       17 Citations
1Metabolomics of cerebrospinal fluid from humans treated for rabies. (O'Sullivan A, Willoughby RE, Mishchuk D, Alcarraz B, Cabezas-Sanchez C, Condori RE, David D, Encarnacion R, Fatteh N, Fernandez J, Franka R, Hedderwick S, McCaughey C, Ondrush J, Paez-Martinez A, Rupprecht C, Velasco-Villa A, Slupsky CM) J Proteome Res 2013 Jan 04;12(1):481-90       33 Citations
1TRPA1 is functionally expressed primarily by IB4-binding, non-peptidergic mouse and rat sensory neurons. (Barabas ME, Kossyreva EA, Stucky CL) PLoS One 2012;7(10):e47988       64 Citations
2Biobreeding rat islets exhibit reduced antioxidative defense and N-acetyl cysteine treatment delays type 1 diabetes. (Bogdani M, Henschel AM, Kansra S, Fuller JM, Geoffrey R, Jia S, Kaldunski ML, Pavletich S, Prosser S, Chen YG, Lernmark A, Hessner MJ) J Endocrinol 2013 Feb;216(2):111-23       14 Citations
1Genetic variants in Arhgef11 are associated with kidney injury in the Dahl salt-sensitive rat. (Williams JM, Johnson AC, Stelloh C, Dreisbach AW, Franceschini N, Regner KR, Townsend RR, Roman RJ, Garrett MR) Hypertension 2012 Nov;60(5):1157-68       21 Citations
2Genomic landscape of non-small cell lung cancer in smokers and never-smokers. (Govindan R, Ding L, Griffith M, Subramanian J, Dees ND, Kanchi KL, Maher CA, Fulton R, Fulton L, Wallis J, Chen K, Walker J, McDonald S, Bose R, Ornitz D, Xiong D, You M, Dooling DJ, Watson M, Mardis ER, Wilson RK) Cell 2012 Sep 14;150(6):1121-34       749 Citations
2Transcriptional signatures as a disease-specific and predictive inflammatory biomarker for type 1 diabetes. (Levy H, Wang X, Kaldunski M, Jia S, Kramer J, Pavletich SJ, Reske M, Gessel T, Yassai M, Quasney MW, Dahmer MK, Gorski J, Hessner MJ) Genes Immun 2012 Dec;13(8):593-604       42 Citations
2PPARγ regulates resistance vessel tone through a mechanism involving RGS5-mediated control of protein kinase C and BKCa channel activity. (Ketsawatsomkron P, Lorca RA, Keen HL, Weatherford ET, Liu X, Pelham CJ, Grobe JL, Faraci FM, England SK, Sigmund CD) Circ Res 2012 Nov 09;111(11):1446-58       43 Citations
1Coex-Rank: An approach incorporating co-expression information for combined analysis of microarray data. (Cai J, Keen HL, Sigmund CD, Casavant TL) J Integr Bioinform 2012 Jul 30;9(1):208       3 Citations
1Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. (Ramsköld D, Luo S, Wang YC, Li R, Deng Q, Faridani OR, Daniels GA, Khrebtukova I, Loring JF, Laurent LC, Schroth GP, Sandberg R) Nat Biotechnol 2012 Aug;30(8):777-82       737 Citations
1The feed-forward loop between YB-1 and MYC is essential for multiple myeloma cell survival. (Bommert KS, Effenberger M, Leich E, Küspert M, Murphy D, Langer C, Moll R, Janz S, Mottok A, Weissbach S, Rosenwald A, Bargou R, Bommert K) Leukemia 2013 Feb;27(2):441-50       21 Citations
1Genomic analysis of immune response against Vibrio cholerae hemolysin in Caenorhabditis elegans. (Sahu SN, Lewis J, Patel I, Bozdag S, Lee JH, LeClerc JE, Cinar HN) PLoS One 2012;7(5):e38200       27 Citations
3Role of genetic modifiers in an orthologous rat model of ARPKD. (O'Meara CC, Hoffman M, Sweeney WE Jr, Tsaih SW, Xiao B, Jacob HJ, Avner ED, Moreno C) Physiol Genomics 2012 Aug 01;44(15):741-53       16 Citations
3Requirements for growth and IL-10 expression of highly purified human T regulatory cells. (Bonacci B, Edwards B, Jia S, Williams CB, Hessner MJ, Gauld SB, Verbsky JW) J Clin Immunol 2012 Oct;32(5):1118-28       8 Citations
1Collaborative Ocular Oncology Group report number 1: prospective validation of a multi-gene prognostic assay in uveal melanoma. (Onken MD, Worley LA, Char DH, Augsburger JJ, Correa ZM, Nudleman E, Aaberg TM Jr, Altaweel MM, Bardenstein DS, Finger PT, Gallie BL, Harocopos GJ, Hovland PG, McGowan HD, Milman T, Mruthyunjaya P, Simpson ER, Smith ME, Wilson DJ, Wirostko WJ, Harbour JW) Ophthalmology 2012 Aug;119(8):1596-603       230 Citations
1Atypical E2F repressors and activators coordinate placental development. (Ouseph MM, Li J, Chen HZ, Pécot T, Wenzel P, Thompson JC, Comstock G, Chokshi V, Byrne M, Forde B, Chong JL, Huang K, Machiraju R, de Bruin A, Leone G) Dev Cell 2012 Apr 17;22(4):849-62       56 Citations
1Integrative assessment of chlorine-induced acute lung injury in mice. (Leikauf GD, Pope-Varsalona H, Concel VJ, Liu P, Bein K, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA Jr, Upadhyay S, Di YP, Li Q, Hu Z, Vuga LJ, Medvedovic M, Kaminski N, You M, Alexander DC, McDunn JE, Prows DR, Knoell DL, Fabisiak JP) Am J Respir Cell Mol Biol 2012 Aug;47(2):234-44       20 Citations
2Intestinal microbiota as novel biomarkers of prior radiation exposure. (Lam V, Moulder JE, Salzman NH, Dubinsky EA, Andersen GL, Baker JE) Radiat Res 2012 May;177(5):573-83       38 Citations
1Identification of vascular and hematopoietic genes downstream of etsrp by deep sequencing in zebrafish. (Gomez G, Lee JH, Veldman MB, Lu J, Xiao X, Lin S) PLoS One 2012;7(3):e31658       16 Citations
1Polycomb repressive complex 2 is required for MLL-AF9 leukemia. (Neff T, Sinha AU, Kluk MJ, Zhu N, Khattab MH, Stein L, Xie H, Orkin SH, Armstrong SA) Proc Natl Acad Sci U S A 2012 Mar 27;109(13):5028-33       137 Citations
1Obesity-insulin targeted genes in the 3p26-25 region in human studies and LG/J and SM/J mice. (Kraja AT, Lawson HA, Arnett DK, Borecki IB, Broeckel U, de las Fuentes L, Hunt SC, Province MA, Cheverud J, Rao DC) Metabolism 2012 Aug;61(8):1129-41       8 Citations
1Identification of prostate-enriched proteins by in-depth proteomic analyses of expressed prostatic secretions in urine. (Principe S, Kim Y, Fontana S, Ignatchenko V, Nyalwidhe JO, Lance RS, Troyer DA, Alessandro R, Semmes OJ, Kislinger T, Drake RR, Medin JA) J Proteome Res 2012 Apr 06;11(4):2386-96       36 Citations
3MicroRNA profiling and prediction of recurrence/relapse-free survival in stage I lung cancer. (Lu Y, Govindan R, Wang L, Liu PY, Goodgame B, Wen W, Sezhiyan A, Pfeifer J, Li YF, Hua X, Wang Y, Yang P, You M) Carcinogenesis 2012 May;33(5):1046-54       114 Citations
4Human gene copy number spectra analysis in congenital heart malformations. (Tomita-Mitchell A, Mahnke DK, Struble CA, Tuffnell ME, Stamm KD, Hidestrand M, Harris SE, Goetsch MA, Simpson PM, Bick DP, Broeckel U, Pelech AN, Tweddell JS, Mitchell ME) Physiol Genomics 2012 May 01;44(9):518-41       63 Citations
1Myocardial alternative RNA splicing and gene expression profiling in early stage hypoplastic left heart syndrome. (Ricci M, Xu Y, Hammond HL, Willoughby DA, Nathanson L, Rodriguez MM, Vatta M, Lipshultz SE, Lincoln J) PLoS One 2012;7(1):e29784       16 Citations
2Gene-expression signature predicts postoperative recurrence in stage I non-small cell lung cancer patients. (Lu Y, Wang L, Liu P, Yang P, You M) PLoS One 2012;7(1):e30880       30 Citations
1Mutations in kelch-like 3 and cullin 3 cause hypertension and electrolyte abnormalities. (Boyden LM, Choi M, Choate KA, Nelson-Williams CJ, Farhi A, Toka HR, Tikhonova IR, Bjornson R, Mane SM, Colussi G, Lebel M, Gordon RD, Semmekrot BA, Poujol A, Välimäki MJ, De Ferrari ME, Sanjad SA, Gutkin M, Karet FE, Tucci JR, Stockigt JR, Keppler-Noreuil KM, Porter CC, Anand SK, Whiteford ML, Davis ID, Dewar SB, Bettinelli A, Fadrowski JJ, Belsha CW, Hunley TE, Nelson RD, Trachtman H, Cole TR, Pinsk M, Bockenhauer D, Shenoy M, Vaidyanathan P, Foreman JW, Rasoulpour M, Thameem F, Al-Shahrouri HZ, Radhakrishnan J, Gharavi AG, Goilav B, Lifton RP) Nature 2012 Jan 22;482(7383):98-102       366 Citations
1Pathway-specific analysis of gene expression data identifies the PI3K/Akt pathway as a novel therapeutic target in cervical cancer. (Schwarz JK, Payton JE, Rashmi R, Xiang T, Jia Y, Huettner P, Rogers BE, Yang Q, Watson M, Rader JS, Grigsby PW) Clin Cancer Res 2012 Mar 01;18(5):1464-71       70 Citations
2Reprogramming of the tumour microenvironment by stromal PTEN-regulated miR-320. (Bronisz A, Godlewski J, Wallace JA, Merchant AS, Nowicki MO, Mathsyaraja H, Srinivasan R, Trimboli AJ, Martin CK, Li F, Yu L, Fernandez SA, Pécot T, Rosol TJ, Cory S, Hallett M, Park M, Piper MG, Marsh CB, Yee LD, Jimenez RE, Nuovo G, Lawler SE, Chiocca EA, Leone G, Ostrowski MC) Nat Cell Biol 2011 Dec 18;14(2):159-67       206 Citations
1S100A7 enhances mammary tumorigenesis through upregulation of inflammatory pathways. (Nasser MW, Qamri Z, Deol YS, Ravi J, Powell CA, Trikha P, Schwendener RA, Bai XF, Shilo K, Zou X, Leone G, Wolf R, Yuspa SH, Ganju RK) Cancer Res 2012 Feb 01;72(3):604-15       78 Citations
1Global gene expression profiling in mouse plasma cell tumor precursor and bystander cells reveals potential intervention targets for plasma cell neoplasia. (LeGrand J, Park ES, Wang H, Gupta S, Owens JD Jr, Nelson PJ, DuBois W, Bair T, Janz S, Mushinski JF) Blood 2012 Jan 26;119(4):1018-28       5 Citations
1Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gut. (Shulzhenko N, Morgun A, Hsiao W, Battle M, Yao M, Gavrilova O, Orandle M, Mayer L, Macpherson AJ, McCoy KD, Fraser-Liggett C, Matzinger P) Nat Med 2011 Nov 20;17(12):1585-93       231 Citations
2Modulation of gene expression and cell-cycle signaling pathways by the EGFR inhibitor gefitinib (Iressa) in rat urinary bladder cancer. (Lu Y, Liu P, Van den Bergh F, Zellmer V, James M, Wen W, Grubbs CJ, Lubet RA, You M) Cancer Prev Res (Phila) 2012 Feb;5(2):248-59       13 Citations
2Mechanochemical control of mesenchymal condensation and embryonic tooth organ formation. (Mammoto T, Mammoto A, Torisawa YS, Tat T, Gibbs A, Derda R, Mannix R, de Bruijn M, Yung CW, Huh D, Ingber DE) Dev Cell 2011 Oct 18;21(4):758-69       110 Citations
1Specific lectin biomarkers for isolation of human pluripotent stem cells identified through array-based glycomic analysis. (Wang YC, Nakagawa M, Garitaonandia I, Slavin I, Altun G, Lacharite RM, Nazor KL, Tran HT, Lynch CL, Leonardo TR, Liu Y, Peterson SE, Laurent LC, Yamanaka S, Loring JF) Cell Res 2011 Nov;21(11):1551-63       59 Citations
1Defining the nature of human pluripotent stem cell progeny. (Patterson M, Chan DN, Ha I, Case D, Cui Y, Van Handel B, Mikkola HK, Lowry WE) Cell Res 2012 Jan;22(1):178-93       83 Citations
1Integrated genomic analyses of ovarian carcinoma. (Cancer Genome Atlas Research Network) Nature 2011 Jun 29;474(7353):609-15    
1Induction of cardiomyogenesis in human embryonic stem cells by human embryonic stem cell-derived definitive endoderm. (Van Orman JR, Si-Tayeb K, Duncan SA, Lough J) Stem Cells Dev 2012 Apr 10;21(6):987-94       3 Citations
1The Borrelia burgdorferi integrin ligand P66 affects gene expression by human cells in culture. (LaFrance ME, Pierce JV, Antonara S, Coburn J) Infect Immun 2011 Aug;79(8):3249-61       13 Citations
1Mechanistic basis for the chemopreventive effects of black raspberries at a late stage of rat esophageal carcinogenesis. (Wang LS, Dombkowski AA, Seguin C, Rocha C, Cukovic D, Mukundan A, Henry C, Stoner GD) Mol Carcinog 2011 Apr;50(4):291-300       24 Citations
1Use of transcriptional signatures induced in lymphoid and myeloid cell lines as an inflammatory biomarker in Type 1 diabetes. (Jia S, Kaldunski M, Jailwala P, Geoffrey R, Kramer J, Wang X, Hessner MJ) Physiol Genomics 2011 Jun 15;43(11):697-709       9 Citations
1Efficacy of the EGFr inhibitor Iressa on development of chemically-induced urinary bladder cancers: dose dependency and modulation of biomarkers. (Lubet RA, Lu Y, Bode AM, You M, Verney ZM, Steele VE, Townsend R, Juliana MM, Grubbs CJ) Oncol Rep 2011 May;25(5):1389-97       8 Citations
1synMuv B proteins antagonize germline fate in the intestine and ensure C. elegans survival. (Petrella LN, Wang W, Spike CA, Rechtsteiner A, Reinke V, Strome S) Development 2011 Mar;138(6):1069-79       55 Citations
1Prolactin-induced mouse mammary carcinomas model estrogen resistant luminal breast cancer. (Arendt LM, Rugowski DE, Grafwallner-Huseth TA, Garcia-Barchino MJ, Rui H, Schuler LA) Breast Cancer Res 2011 Jan 28;13(1):R11       40 Citations
1Unique cellular and mitochondrial defects mediate FK506-induced islet β-cell dysfunction. (Rostambeigi N, Lanza IR, Dzeja PP, Deeds MC, Irving BA, Reddi HV, Madde P, Zhang S, Asmann YW, Anderson JM, Schimke JM, Nair KS, Eberhardt NL, Kudva YC) Transplantation 2011 Mar 27;91(6):615-23       35 Citations
1Responses of human endothelial cells to pathogenic and non-pathogenic Leptospira species. (Martinez-Lopez DG, Fahey M, Coburn J) PLoS Negl Trop Dis 2010 Dec 14;4(12):e918       29 Citations
1Global analysis of phase locking in gene expression during cell cycle: the potential in network modeling. (Gao S, Hartman JL 4th, Carter JL, Hessner MJ, Wang X) BMC Syst Biol 2010 Dec 03;4:167       6 Citations
1Characterization of soy-based changes in Wnt-frizzled signaling in prostate cancer. (Liss MA, Schlicht M, Kahler A, Fitzgerald R, Thomassi T, Degueme A, Hessner M, Datta MW) Cancer Genomics Proteomics 2010 Sep-Oct;7(5):245-52    
1RB-pathway disruption in breast cancer: differential association with disease subtypes, disease-specific prognosis and therapeutic response. (Ertel A, Dean JL, Rui H, Liu C, Witkiewicz AK, Knudsen KE, Knudsen ES) Cell Cycle 2010 Oct 15;9(20):4153-63    
1Geno-transcriptomic dissection of proteinuria in the uninephrectomized rat uncovers a molecular complexity with sexual dimorphism. (Yagil Y, Hessner M, Schulz H, Gosele C, Lebedev L, Barkalifa R, Sapojnikov M, Hubner N, Yagil C) Physiol Genomics 2010 Nov 29;42A(4):301-16       6 Citations
1Gene and noncoding RNA regulation underlying photoreceptor protection: microarray study of dietary antioxidant saffron and photobiomodulation in rat retina. (Natoli R, Zhu Y, Valter K, Bisti S, Eells J, Stone J) Mol Vis 2010 Sep 03;16:1801-22       79 Citations
1Tumor antigen analysis in neuroblastoma by serological interrogation of bioinformatic data. (Kohler ME, Johnson BD, Palen K, Chen QR, Khan J, Orentas RJ) Cancer Sci 2010 Nov;101(11):2316-24       6 Citations
3MicroRNA-target pairs in human renal epithelial cells treated with transforming growth factor beta 1: a novel role of miR-382. (Kriegel AJ, Fang Y, Liu Y, Tian Z, Mladinov D, Matus IR, Ding X, Greene AS, Liang M) Nucleic Acids Res 2010 Dec;38(22):8338-47       88 Citations
1Identification of novel cluster groups in pediatric high-risk B-precursor acute lymphoblastic leukemia with gene expression profiling: correlation with genome-wide DNA copy number alterations, clinical characteristics, and outcome. (Harvey RC, Mullighan CG, Wang X, Dobbin KK, Davidson GS, Bedrick EJ, Chen IM, Atlas SR, Kang H, Ar K, Wilson CS, Wharton W, Murphy M, Devidas M, Carroll AJ, Borowitz MJ, Bowman WP, Downing JR, Relling M, Yang J, Bhojwani D, Carroll WL, Camitta B, Reaman GH, Smith M, Hunger SP, Willman CL) Blood 2010 Dec 02;116(23):4874-84       262 Citations
1Early expression of stem cell-associated genes within the CD8 compartment after treatment with a tumor vaccine. (Kohler ME, Hallett WH, Chen QR, Khan J, Johnson BD, Orentas RJ) Cell Immunol 2010;265(1):65-73       4 Citations
1GliomaPredict: a clinically useful tool for assigning glioma patients to specific molecular subtypes. (Li A, Bozdag S, Kotliarov Y, Fine HA) BMC Med Inform Decis Mak 2010 Jul 15;10:38       13 Citations
1Diagnosis of partial body radiation exposure in mice using peripheral blood gene expression profiles. (Meadows SK, Dressman HK, Daher P, Himburg H, Russell JL, Doan P, Chao NJ, Lucas J, Nevins JR, Chute JP) PLoS One 2010 Jul 12;5(7):e11535       35 Citations
1Robust gene network analysis reveals alteration of the STAT5a network as a hallmark of prostate cancer. (Reddy A, Huang CC, Liu H, Delisi C, Nevalainen MT, Szalma S, Bhanot G) Genome Inform 2010;24:139-53       4 Citations
1Use of cross species genomic profiling identifies pathways and genes differentially regulated in prostate cancer cells treated with soy protein isolates or purified genistein. (Liss MA, Schlicht M, Degueme A, Hessner M, Datta MW) Cancer Genomics Proteomics 2010 May-Jun;7(3):111-28       4 Citations
1FastMEDUSA: a parallelized tool to infer gene regulatory networks. (Bozdag S, Li A, Wuchty S, Fine HA) Bioinformatics 2010 Jul 15;26(14):1792-3       15 Citations
1Trpv6 mediates intestinal calcium absorption during calcium restriction and contributes to bone homeostasis. (Lieben L, Benn BS, Ajibade D, Stockmans I, Moermans K, Hediger MA, Peng JB, Christakos S, Bouillon R, Carmeliet G) Bone 2010 Aug;47(2):301-8       69 Citations
1Ectopic expression of wild-type FGFR3 cooperates with MYC to accelerate development of B-cell lineage neoplasms. (Zingone A, Cultraro CM, Shin DM, Bean CM, Morse HC 3rd, Janz S, Kuehl WM) Leukemia 2010 Jun;24(6):1171-8       12 Citations
1Elevated PIN1 expression by C/EBPalpha-p30 blocks C/EBPalpha-induced granulocytic differentiation through c-Jun in AML. (Pulikkan JA, Dengler V, Peer Zada AA, Kawasaki A, Geletu M, Pasalic Z, Bohlander SK, Ryo A, Tenen DG, Behre G) Leukemia 2010 May;24(5):914-23    
3Renal medullary microRNAs in Dahl salt-sensitive rats: miR-29b regulates several collagens and related genes. (Liu Y, Taylor NE, Lu L, Usa K, Cowley AW Jr, Ferreri NR, Yeo NC, Liang M) Hypertension 2010 Apr;55(4):974-82       181 Citations
1Transcription factor Stat3 stimulates metastatic behavior of human prostate cancer cells in vivo, whereas Stat5b has a preferential role in the promotion of prostate cancer cell viability and tumor growth. (Gu L, Dagvadorj A, Lutz J, Leiby B, Bonuccelli G, Lisanti MP, Addya S, Fortina P, Dasgupta A, Hyslop T, Bubendorf L, Nevalainen MT) Am J Pathol 2010 Apr;176(4):1959-72       58 Citations
1An ets2-driven transcriptional program in tumor-associated macrophages promotes tumor metastasis. (Zabuawala T, Taffany DA, Sharma SM, Merchant A, Adair B, Srinivasan R, Rosol TJ, Fernandez S, Huang K, Leone G, Ostrowski MC) Cancer Res 2010 Feb 15;70(4):1323-33       86 Citations
1Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses. (Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK) Mol Genet Genomics 2009 Nov;282(5):463-74       58 Citations
1A microRNA expression signature for cervical cancer prognosis. (Hu X, Schwarz JK, Lewis JS Jr, Huettner PC, Rader JS, Deasy JO, Grigsby PW, Wang X) Cancer Res 2010 Feb 15;70(4):1441-8       235 Citations
1Genomewide RNA expression profiling in lung identifies distinct signatures in idiopathic pulmonary arterial hypertension and secondary pulmonary hypertension. (Rajkumar R, Konishi K, Richards TJ, Ishizawar DC, Wiechert AC, Kaminski N, Ahmad F) Am J Physiol Heart Circ Physiol 2010 Apr;298(4):H1235-48       100 Citations
2PepD participates in the mycobacterial stress response mediated through MprAB and SigE. (White MJ, He H, Penoske RM, Twining SS, Zahrt TC) J Bacteriol 2010 Mar;192(6):1498-510       41 Citations
2Bioinformatic analysis of gene sets regulated by ligand-activated and dominant-negative peroxisome proliferator-activated receptor gamma in mouse aorta. (Keen HL, Halabi CM, Beyer AM, de Lange WJ, Liu X, Maeda N, Faraci FM, Casavant TL, Sigmund CD) Arterioscler Thromb Vasc Biol 2010 Mar;30(3):518-25       20 Citations
1IL-6 and MYC collaborate in plasma cell tumor formation in mice. (Rutsch S, Neppalli VT, Shin DM, DuBois W, Morse HC 3rd, Goldschmidt H, Janz S) Blood 2010 Mar 04;115(9):1746-54       35 Citations
2Dynamic convergence and divergence of renal genomic and biological pathways in protection from Dahl salt-sensitive hypertension. (Lu L, Li P, Yang C, Kurth T, Misale M, Skelton M, Moreno C, Roman RJ, Greene AS, Jacob HJ, Lazar J, Liang M, Cowley AW Jr) Physiol Genomics 2010 Mar 03;41(1):63-70       24 Citations
1Erk1 and Erk2 regulate endothelial cell proliferation and migration during mouse embryonic angiogenesis. (Srinivasan R, Zabuawala T, Huang H, Zhang J, Gulati P, Fernandez S, Karlo JC, Landreth GE, Leone G, Ostrowski MC) PLoS One 2009 Dec 14;4(12):e8283       87 Citations
1Brucella melitensis, B. neotomae and B. ovis elicit common and distinctive macrophage defense transcriptional responses. (Covert J, Mathison AJ, Eskra L, Banai M, Splitter G) Exp Biol Med (Maywood) 2009 Dec;234(12):1450-67       23 Citations
2A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo. (Li K, Blum Y, Verma A, Liu Z, Pramanik K, Leigh NR, Chun CZ, Samant GV, Zhao B, Garnaas MK, Horswill MA, Stanhope SA, North PE, Miao RQ, Wilkinson GA, Affolter M, Ramchandran R) Blood 2010 Jan 07;115(1):133-9       114 Citations
1Genetic analysis of xenocoumacin antibiotic production in the mutualistic bacterium Xenorhabdus nematophila. (Park D, Ciezki K, van der Hoeven R, Singh S, Reimer D, Bode HB, Forst S) Mol Microbiol 2009 Sep;73(5):938-49       46 Citations
2Apoptosis of CD4+ CD25(high) T cells in type 1 diabetes may be partially mediated by IL-2 deprivation. (Jailwala P, Waukau J, Glisic S, Jana S, Ehlenbach S, Hessner M, Alemzadeh R, Matsuyama S, Laud P, Wang X, Ghosh S) PLoS One 2009 Aug 05;4(8):e6527       62 Citations
1Gene expression signatures in polyarticular juvenile idiopathic arthritis demonstrate disease heterogeneity and offer a molecular classification of disease subsets. (Griffin TA, Barnes MG, Ilowite NT, Olson JC, Sherry DD, Gottlieb BS, Aronow BJ, Pavlidis P, Hinze CH, Thornton S, Thompson SD, Grom AA, Colbert RA, Glass DN) Arthritis Rheum 2009 Jul;60(7):2113-23       50 Citations
1Subtype-specific peripheral blood gene expression profiles in recent-onset juvenile idiopathic arthritis. (Barnes MG, Grom AA, Thompson SD, Griffin TA, Pavlidis P, Itert L, Fall N, Sowders DP, Hinze CH, Aronow BJ, Luyrink LK, Srivastava S, Ilowite NT, Gottlieb BS, Olson JC, Sherry DD, Glass DN, Colbert RA) Arthritis Rheum 2009 Jul;60(7):2102-12       117 Citations
1OpnS, an outer membrane porin of Xenorhabdus nematophila, confers a competitive advantage for growth in the insect host. (van der Hoeven R, Forst S) J Bacteriol 2009 Sep;191(17):5471-9       5 Citations
1Identification of migR, a regulatory element of the Francisella tularensis live vaccine strain iglABCD virulence operon required for normal replication and trafficking in macrophages. (Buchan BW, McCaffrey RL, Lindemann SR, Allen LA, Jones BD) Infect Immun 2009 Jun;77(6):2517-29       53 Citations
1Genetic ablation of caveolin-1 drives estrogen-hypersensitivity and the development of DCIS-like mammary lesions. (Mercier I, Casimiro MC, Zhou J, Wang C, Plymire C, Bryant KG, Daumer KM, Sotgia F, Bonuccelli G, Witkiewicz AK, Lin J, Tran TH, Milliman J, Frank PG, Jasmin JF, Rui H, Pestell RG, Lisanti MP) Am J Pathol 2009 Apr;174(4):1172-90       46 Citations
1Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish. (Gomez GA, Veldman MB, Zhao Y, Burgess S, Lin S) PLoS One 2009;4(3):e4994       35 Citations
2Intramucosal distribution of WNT signaling components in human esophagus. (Ali I, Rafiee P, Zheng Y, Johnson C, Banerjee B, Haasler G, Jacob H, Shaker R) J Clin Gastroenterol 2009 Apr;43(4):327-37       9 Citations
1Functional genomics of Enterococcus faecalis: multiple novel genetic determinants for biofilm formation in the core genome. (Ballering KS, Kristich CJ, Grindle SM, Oromendia A, Beattie DT, Dunny GM) J Bacteriol 2009 Apr;191(8):2806-14       43 Citations
1Loss of caveolin-3 induces a lactogenic microenvironment that is protective against mammary tumor formation. (Sotgia F, Casimiro MC, Bonuccelli G, Liu M, Whitaker-Menezes D, Er O, Daumer KM, Mercier I, Witkiewicz AK, Minetti C, Capozza F, Gormley M, Quong AA, Rui H, Frank PG, Milliman JN, Knudsen ES, Zhou J, Wang C, Pestell RG, Lisanti MP) Am J Pathol 2009 Feb;174(2):613-29       16 Citations
1A susceptibility locus for papillary thyroid carcinoma on chromosome 8q24. (He H, Nagy R, Liyanarachchi S, Jiao H, Li W, Suster S, Kere J, de la Chapelle A) Cancer Res 2009 Jan 15;69(2):625-31       101 Citations
1Quorum sensing primes the oxidative stress response in the insect endosymbiont, Sodalis glossinidius. (Pontes MH, Babst M, Lochhead R, Oakeson K, Smith K, Dale C) PLoS One 2008;3(10):e3541       27 Citations
1Identification of cold-shock protein RBM3 as a possible regulator of skeletal muscle size through expression profiling. (Dupont-Versteegden EE, Nagarajan R, Beggs ML, Bearden ED, Simpson PM, Peterson CA) Am J Physiol Regul Integr Comp Physiol 2008 Oct;295(4):R1263-73       22 Citations
1Zebrafish as a developmental model organism for pediatric research. (Veldman MB, Lin S) Pediatr Res 2008 Nov;64(5):470-6       66 Citations
1Cyclin D1b is aberrantly regulated in response to therapeutic challenge and promotes resistance to estrogen antagonists. (Wang Y, Dean JL, Millar EK, Tran TH, McNeil CM, Burd CJ, Henshall SM, Utama FE, Witkiewicz A, Rui H, Sutherland RL, Knudsen KE, Knudsen ES) Cancer Res 2008 Jul 15;68(14):5628-38       50 Citations
1Global expression profiling identifies a novel biosignature for protein aggregation R120GCryAB cardiomyopathy in mice. (Rajasekaran NS, Firpo MA, Milash BA, Weiss RB, Benjamin IJ) Physiol Genomics 2008 Oct 08;35(2):165-72       21 Citations
1Aberrant expression of oncogenic and tumor-suppressive microRNAs in cervical cancer is required for cancer cell growth. (Wang X, Tang S, Le SY, Lu R, Rader JS, Meyers C, Zheng ZM) PLoS One 2008 Jul 02;3(7):e2557       574 Citations
1Differential display identifies overexpression of the USP36 gene, encoding a deubiquitinating enzyme, in ovarian cancer. (Li J, Olson LM, Zhang Z, Li L, Bidder M, Nguyen L, Pfeifer J, Rader JS) Int J Med Sci 2008 Jun 06;5(3):133-42       15 Citations
1Transcription factor foxq1 controls mucin gene expression and granule content in mouse stomach surface mucous cells. (Verzi MP, Khan AH, Ito S, Shivdasani RA) Gastroenterology 2008 Aug;135(2):591-600       35 Citations
3Molecular networks in Dahl salt-sensitive hypertension based on transcriptome analysis of a panel of consomic rats. (Liang M, Lee NH, Wang H, Greene AS, Kwitek AE, Kaldunski ML, Luu TV, Frank BC, Bugenhagen S, Jacob HJ, Cowley AW Jr) Physiol Genomics 2008 Jun 12;34(1):54-64       37 Citations
2High perfusion pressure accelerates renal injury in salt-sensitive hypertension. (Mori T, Polichnowski A, Glocka P, Kaldunski M, Ohsaki Y, Liang M, Cowley AW Jr) J Am Soc Nephrol 2008 Aug;19(8):1472-82       71 Citations
1Genetic analysis of congenital cystic adenomatoid malformation reveals a novel pulmonary gene: fatty acid binding protein-7 (brain type). (Wagner AJ, Stumbaugh A, Tigue Z, Edmondson J, Paquet AC, Farmer DL, Hawgood S) Pediatr Res 2008 Jul;64(1):11-6       31 Citations
1Gene expression signatures of radiation response are specific, durable and accurate in mice and humans. (Meadows SK, Dressman HK, Muramoto GG, Himburg H, Salter A, Wei Z, Ginsburg GS, Chao NJ, Nevins JR, Chute JP) PLoS One 2008 Apr 02;3(4):e1912       76 Citations
1Identification of differentially regulated francisella tularensis genes by use of a newly developed Tn5-based transposon delivery system. (Buchan BW, McLendon MK, Jones BD) Appl Environ Microbiol 2008 May;74(9):2637-45       26 Citations
2Interference with PPARgamma signaling causes cerebral vascular dysfunction, hypertrophy, and remodeling. (Beyer AM, Baumbach GL, Halabi CM, Modrick ML, Lynch CM, Gerhold TD, Ghoneim SM, de Lange WJ, Keen HL, Tsai YS, Maeda N, Sigmund CD, Faraci FM) Hypertension 2008 Apr;51(4):867-71       95 Citations
1Differential display of DNA-binding proteins reveals heat-shock factor 1 as a circadian transcription factor. (Reinke H, Saini C, Fleury-Olela F, Dibner C, Benjamin IJ, Schibler U) Genes Dev 2008 Feb 01;22(3):331-45       147 Citations
1Enhanced susceptibility to chemical induction of ovarian tumors in mice with a germ line p53 mutation. (Wang Y, Zhang Z, Lu Y, Yao R, Jia D, Wen W, LaRegina M, Crist K, Lubet R, You M) Mol Cancer Res 2008 Jan;6(1):99-109       8 Citations
1MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis. (Tian Z, Greene AS, Pietrusz JL, Matus IR, Liang M) Genome Res 2008 Mar;18(3):404-11       179 Citations
1Identification of a molecular signature in human type 1 diabetes mellitus using serum and functional genomics. (Wang X, Jia S, Geoffrey R, Alemzadeh R, Ghosh S, Hessner MJ) J Immunol 2008 Feb 01;180(3):1929-37       84 Citations
1Endothelial dysfunction and the development of renal injury in spontaneously hypertensive rats fed a high-fat diet. (Knight SF, Quigley JE, Yuan J, Roy SS, Elmarakby A, Imig JD) Hypertension 2008 Feb;51(2):352-9       87 Citations
1Genetic endothelial systems biology of sickle stroke risk. (Chang Milbauer L, Wei P, Enenstein J, Jiang A, Hillery CA, Scott JP, Nelson SC, Bodempudi V, Topper JN, Yang RB, Hirsch B, Pan W, Hebbel RP) Blood 2008 Apr 01;111(7):3872-9       36 Citations
1Aging alters gene expression of growth and remodeling factors in human skeletal muscle both at rest and in response to acute resistance exercise. (Dennis RA, Przybyla B, Gurley C, Kortebein PM, Simpson P, Sullivan DH, Peterson CA) Physiol Genomics 2008 Feb 19;32(3):393-400       72 Citations
1Characterization of proteomic and metabolomic responses to dietary factors and supplements. (Astle J, Ferguson JT, German JB, Harrigan GG, Kelleher NL, Kodadek T, Parks BA, Roth MJ, Singletary KW, Wenger CD, Mahady GB) J Nutr 2007 Dec;137(12):2787-93       34 Citations
2Common human cancer genes discovered by integrated gene-expression analysis. (Lu Y, Yi Y, Liu P, Wen W, James M, Wang D, You M) PLoS One 2007 Nov 07;2(11):e1149       62 Citations
1Gene expression profiling of peripheral blood from patients with untreated new-onset systemic juvenile idiopathic arthritis reveals molecular heterogeneity that may predict macrophage activation syndrome. (Fall N, Barnes M, Thornton S, Luyrink L, Olson J, Ilowite NT, Gottlieb BS, Griffin T, Sherry DD, Thompson S, Glass DN, Colbert RA, Grom AA) Arthritis Rheum 2007 Nov;56(11):3793-804       160 Citations
1The role of nitric oxide and the unfolded protein response in cytokine-induced beta-cell death. (Chambers KT, Unverferth JA, Weber SM, Wek RC, Urano F, Corbett JA) Diabetes 2008 Jan;57(1):124-32       63 Citations
1Microarray analysis reveals distinctive signaling between the bed nucleus of the stria terminalis, nucleus accumbens, and dorsal striatum. (Olsen CM, Huang Y, Goodwin S, Ciobanu DC, Lu L, Sutter TR, Winder DG) Physiol Genomics 2008 Feb 19;32(3):283-98       13 Citations
2Molecular targets of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) within the zebrafish ovary: insights into TCDD-induced endocrine disruption and reproductive toxicity. (Heiden TC, Struble CA, Rise ML, Hessner MJ, Hutz RJ, Carvan MJ 3rd) Reprod Toxicol 2008 Jan;25(1):47-57       44 Citations
1Gene expression profiling reveals different pathways related to Abl and other genes that cooperate with c-Myc in a model of plasma cell neoplasia. (Park ES, Shaughnessy JD Jr, Gupta S, Wang H, Lee JS, Woo HG, Zhan F, Owens JD Jr, Potter M, Janz S, Mushinski JF) BMC Genomics 2007 Aug 31;8:302       19 Citations
1Profiling microdissected epithelium and stroma to model genomic signatures for cervical carcinogenesis accommodating for covariates. (Gius D, Funk MC, Chuang EY, Feng S, Huettner PC, Nguyen L, Bradbury CM, Mishra M, Gao S, Buttin BM, Cohn DE, Powell MA, Horowitz NS, Whitcomb BP, Rader JS) Cancer Res 2007 Aug 01;67(15):7113-23       60 Citations
2Distinct profiles of endothelial gene expression in hyperpermeable regions of the porcine aortic arch and thoracic aorta. (LaMack JA, Himburg HA, Friedman MH) Atherosclerosis 2007 Dec;195(2):e35-41       11 Citations
1Fluorescence activated cell sorting (FACS) using RNAlater to minimize RNA degradation and perturbation of mRNA expression from cells involved in initial host microbe interactions. (Nishimoto KP, Newkirk D, Hou S, Fruehauf J, Nelson EL) J Microbiol Methods 2007 Jul;70(1):205-8       14 Citations
1Apolipoprotein E modifies the CNS response to injury via a histamine-mediated pathway. (Mace BE, Wang H, Lynch JR, Moss J, Sullivan P, Colton H, Morgan K, Renauld JC, Laskowitz DT) Neurol Res 2007 Apr;29(3):243-50       11 Citations
1A transgenic mouse model of plasma cell malignancy shows phenotypic, cytogenetic, and gene expression heterogeneity similar to human multiple myeloma. (Boylan KL, Gosse MA, Staggs SE, Janz S, Grindle S, Kansas GS, Van Ness BG) Cancer Res 2007 May 01;67(9):4069-78       32 Citations
1Gene expression overlap affects karyotype prediction in pediatric acute lymphoblastic leukemia. (Martin SB, Mosquera-Caro MP, Potter JW, Davidson GS, Andries E, Kang H, Helman P, Veroff RL, Atlas SR, Murphy M, Wang X, Ar K, Xu Y, Chen IM, Schultz FA, Wilson CS, Harvey R, Bedrick E, Shuster J, Carroll AJ, Camitta B, Willman CL) Leukemia 2007 Jun;21(6):1341-4       7 Citations
1Gene expression profiling of chemically induced rat bladder tumors. (Yao R, Yi Y, Grubbs CJ, Lubet RA, You M) Neoplasia 2007 Mar;9(3):207-21       28 Citations
1Anaplastic, plasmablastic, and plasmacytic plasmacytomas of mice: relationships to human plasma cell neoplasms and late-stage differentiation of normal B cells. (Qi CF, Zhou JX, Lee CH, Naghashfar Z, Xiang S, Kovalchuk AL, Fredrickson TN, Hartley JW, Roopenian DC, Davidson WF, Janz S, Morse HC 3rd) Cancer Res 2007 Mar 15;67(6):2439-47       21 Citations
1Potassium channel gene expression in the rat cochlear nucleus. (Friedland DR, Eernisse R, Popper P) Hear Res 2007 Jun;228(1-2):31-43       12 Citations
2Gene expression analysis of gallium-resistant and gallium-sensitive lymphoma cells reveals a role for metal-responsive transcription factor-1, metallothionein-2A, and zinc transporter-1 in modulating the antineoplastic activity of gallium nitrate. (Yang M, Kroft SH, Chitambar CR) Mol Cancer Ther 2007 Feb;6(2):633-43       33 Citations
1Regulatory T cell development in the absence of functional Foxp3. (Lin W, Haribhai D, Relland LM, Truong N, Carlson MR, Williams CB, Chatila TA) Nat Immunol 2007 Apr;8(4):359-68       331 Citations
1A gene expression signature predicts survival of patients with stage I non-small cell lung cancer. (Lu Y, Lemon W, Liu PY, Yi Y, Morrison C, Yang P, Sun Z, Szoke J, Gerald WL, Watson M, Govindan R, You M) PLoS Med 2006 Dec;3(12):e467       232 Citations
1ADME transcriptome in Hispanic versus White donor livers: evidence of a globally enhanced NR1I3 (CAR, constitutive androstane receptor) gene signature in Hispanics. (Finkelstein D, Lamba V, Assem M, Rengelshausen J, Yasuda K, Strom S, Schuetz E) Xenobiotica 2006 Oct-Nov;36(10-11):989-1012       10 Citations
2Evidence of a functional role for mast cells in the development of type 1 diabetes mellitus in the BioBreeding rat. (Geoffrey R, Jia S, Kwitek AE, Woodliff J, Ghosh S, Lernmark A, Wang X, Hessner MJ) J Immunol 2006 Nov 15;177(10):7275-86       54 Citations
1The genetic dissection of essential hypertension. (Cowley AW Jr) Nat Rev Genet 2006 Nov;7(11):829-40       216 Citations
1A preferential role for STAT5, not constitutively active STAT3, in promoting survival of a human lymphoid tumor. (Nagy ZS, Rui H, Stepkowski SM, Karras J, Kirken RA) J Immunol 2006 Oct 15;177(8):5032-40       21 Citations
1Proteomic analysis of acute promyelocytic leukemia: PML-RARalpha leads to decreased phosphorylation of OP18 at serine 63. (Zada AA, Geletu MH, Pulikkan JA, Müller-Tidow C, Reddy VA, Christopeit M, Hiddemann WD, Behre HM, Tenen DG, Behre G) Proteomics 2006 Nov;6(21):5705-19       11 Citations
1Comprehensive quality control utilizing the prehybridization third-dye image leads to accurate gene expression measurements by cDNA microarrays. (Wang X, Jia S, Meyer L, Xiang B, Chen LY, Jiang N, Moreno C, Jacob HJ, Ghosh S, Hessner MJ) BMC Bioinformatics 2006 Aug 14;7:378       8 Citations
1Differentially expressed genes in the rat cochlear nucleus. (Friedland DR, Popper P, Eernisse R, Cioffi JA) Neuroscience 2006 Oct 27;142(3):753-68       16 Citations
1Dickkopf homologs in squamous mucosa of esophagitis patients are overexpressed compared with Barrett's patients and healthy controls. (Ali I, Rafiee P, Hogan WJ, Jacob HJ, Komorowski RA, Haasler GB, Shaker R) Am J Gastroenterol 2006 Jul;101(7):1437-48       17 Citations
1Gene expression patterns in advanced human cervical cancer. (Grigsby PW, Watson M, Powell MA, Zhang Z, Rader JS) Int J Gynecol Cancer 2006 Mar-Apr;16(2):562-7       27 Citations
1Organ-specific expression profiles of rat mammary gland, liver, and lung tissues treated with targretin, 9-cis retinoic acid, and 4-hydroxyphenylretinamide. (Wang Y, Yao R, Maciag A, Grubbs CJ, Lubet RA, You M) Mol Cancer Ther 2006 Apr;5(4):1060-72       22 Citations
1The mitogen-activated protein kinases and Akt are developmentally regulated in the chronically anemic fetal sheep heart. (Olson AK, Protheroe KN, Scholz TD, Segar JL) J Soc Gynecol Investig 2006 Apr;13(3):157-65       11 Citations
1Differential expression of cytoskeletal genes in the cochlear nucleus. (Friedland DR, Popper P, Eernisse R, Ringger B, Cioffi JA) Anat Rec A Discov Mol Cell Evol Biol 2006 Apr;288(4):447-65       6 Citations
1MprAB is a stress-responsive two-component system that directly regulates expression of sigma factors SigB and SigE in Mycobacterium tuberculosis. (He H, Hovey R, Kane J, Singh V, Zahrt TC) J Bacteriol 2006 Mar;188(6):2134-43       110 Citations
1A gene expression signature that can predict green tea exposure and chemopreventive efficacy of lung cancer in mice. (Lu Y, Yao R, Yan Y, Wang Y, Hara Y, Lubet RA, You M) Cancer Res 2006 Feb 15;66(4):1956-63       33 Citations
1Stem cell factor receptor induces progenitor and natural killer cell-mediated cardiac survival and repair after myocardial infarction. (Ayach BB, Yoshimitsu M, Dawood F, Sun M, Arab S, Chen M, Higuchi K, Siatskas C, Lee P, Lim H, Zhang J, Cukerman E, Stanford WL, Medin JA, Liu PP) Proc Natl Acad Sci U S A 2006 Feb 14;103(7):2304-9       80 Citations
1Physiogenomic resources for rat models of heart, lung and blood disorders. (Malek RL, Wang HY, Kwitek AE, Greene AS, Bhagabati N, Borchardt G, Cahill L, Currier T, Frank B, Fu X, Hasinoff M, Howe E, Letwin N, Luu TV, Saeed A, Sajadi H, Salzberg SL, Sultana R, Thiagarajan M, Tsai J, Veratti K, White J, Quackenbush J, Jacob HJ, Lee NH) Nat Genet 2006 Feb;38(2):234-9       44 Citations
1Three-color cDNA microarrays with prehybridization quality control yield gene expression data comparable to that of commercial platforms. (Hessner MJ, Xiang B, Jia S, Geoffrey R, Holmes S, Meyer L, Muheisen S, Wang X) Physiol Genomics 2006 Mar 13;25(1):166-78       5 Citations
3Fetomaternal cross talk in the placental vascular bed: control of coagulation by trophoblast cells. (Sood R, Kalloway S, Mast AE, Hillard CJ, Weiler H) Blood 2006 Apr 15;107(8):3173-80       68 Citations
1Molecular and cytological features of the mouse B-cell lymphoma line iMycEmu-1. (Han SS, Shaffer AL, Peng L, Chung ST, Lim JH, Maeng S, Kim JS, McNeil N, Ried T, Staudt LM, Janz S) Mol Cancer 2005 Nov 09;4:40       5 Citations
1Expression of matrix metalloproteinases subsequent to urogenital Chlamydia muridarum infection of mice. (Ramsey KH, Sigar IM, Schripsema JH, Shaba N, Cohoon KP) Infect Immun 2005 Oct;73(10):6962-73       47 Citations
1Tools and strategies for physiological genomics: the Rat Genome Database. (Twigger SN, Pasko D, Nie J, Shimoyama M, Bromberg S, Campbell D, Chen J, dela Cruz N, Fan C, Foote C, Harris G, Hickmann B, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nigam R, Petri V, Reilly D, Ruotti V, Schauberger E, Seiler K, Slyper R, Smith J, Wang W, Wu W, Zhao L, Zuniga-Meyer A, Tonellato PJ, Kwitek AE, Jacob HJ) Physiol Genomics 2005 Oct 17;23(2):246-56       21 Citations
1Overexpression of neuropilin-1 promotes constitutive MAPK signalling and chemoresistance in pancreatic cancer cells. (Wey JS, Gray MJ, Fan F, Belcheva A, McCarty MF, Stoeltzing O, Somcio R, Liu W, Evans DB, Klagsbrun M, Gallick GE, Ellis LM) Br J Cancer 2005 Jul 25;93(2):233-41       91 Citations
1Hotelling's T2 multivariate profiling for detecting differential expression in microarrays. (Lu Y, Liu PY, Xiao P, Deng HW) Bioinformatics 2005 Jul 15;21(14):3105-13       70 Citations
1Changes in gene expression following high-temperature adaptation in experimentally evolved populations of E. coli. (Riehle MM, Bennett AF, Long AD) Physiol Biochem Zool 2005 May-Jun;78(3):299-315       19 Citations
1The genetics of osteoporosis. (Long JR, Xiong DH, Recker RR, Deng HW) Drugs Today (Barc) 2005 Mar;41(3):205-18       3 Citations
3Transcriptome analysis and kidney research: toward systems biology. (Liang M, Cowley AW Jr, Hessner MJ, Lazar J, Basile DP, Pietrusz JL) Kidney Int 2005 Jun;67(6):2114-22       20 Citations
1Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments. (Liu H, Tarima S, Borders AS, Getchell TV, Getchell ML, Stromberg AJ) BMC Bioinformatics 2005 Apr 25;6:106       39 Citations
2Cell-free protein production and labeling protocol for NMR-based structural proteomics. (Vinarov DA, Lytle BL, Peterson FC, Tyler EM, Volkman BF, Markley JL) Nat Methods 2004 Nov;1(2):149-53       112 Citations
1Induction and modulation of lung tumors: genomic and transcriptional alterations in cigarette smoke-exposed mice. (De Flora S, Izzotti A, D'Agostini F, Bennicelli C, You M, Lubet RA, Balansky RM) Exp Lung Res 2005 Jan-Feb;31(1):19-35       17 Citations
1Tissue-specific transcriptome responses in rats with early streptozotocin-induced diabetes. (Knoll KE, Pietrusz JL, Liang M) Physiol Genomics 2005 Apr 14;21(2):222-9       46 Citations
1Overexpression of tropomysin-related kinase B in metastatic human pancreatic cancer cells. (Sclabas GM, Fujioka S, Schmidt C, Li Z, Frederick WA, Yang W, Yokoi K, Evans DB, Abbruzzese JL, Hess KR, Zhang W, Fidler IJ, Chiao PJ) Clin Cancer Res 2005 Jan 15;11(2 Pt 1):440-9       102 Citations
1Organ-specific regulation of pro-inflammatory molecules in heart, lung, and kidney following brain death. (Skrabal CA, Thompson LO, Potapov EV, Southard RE, Joyce DL, Youker KA, Noon GP, Loebe M) J Surg Res 2005 Jan;123(1):118-25       69 Citations
2Identification of persistently altered gene expression in the kidney after functional recovery from ischemic acute renal failure. (Basile DP, Fredrich K, Alausa M, Vio CP, Liang M, Rieder MR, Greene AS, Cowley AW Jr) Am J Physiol Renal Physiol 2005 May;288(5):F953-63       77 Citations
1Differential effects of delivery of omega-3 fatty acids to human cancer cells by low-density lipoproteins versus albumin. (Edwards IJ, Berquin IM, Sun H, O'flaherty JT, Daniel LW, Thomas MJ, Rudel LL, Wykle RL, Chen YQ) Clin Cancer Res 2004 Dec 15;10(24):8275-83       30 Citations
1Gene expression in the lung of p53 mutant mice exposed to cigarette smoke. (Izzotti A, Cartiglia C, Longobardi M, Bagnasco M, Merello A, You M, Lubet RA, De Flora S) Cancer Res 2004 Dec 01;64(23):8566-72       37 Citations
1Involvement of eotaxin, eosinophils, and pancreatic predisposition in development of type 1 diabetes mellitus in the BioBreeding rat. (Hessner MJ, Wang X, Meyer L, Geoffrey R, Jia S, Fuller J, Lernmark A, Ghosh S) J Immunol 2004 Dec 01;173(11):6993-7002       45 Citations
1Altered gene expression profile in mouse bladder cancers induced by hydroxybutyl(butyl)nitrosamine. (Yao R, Lemon WJ, Wang Y, Grubbs CJ, Lubet RA, You M) Neoplasia 2004 Sep-Oct;6(5):569-77       26 Citations
1A novel approach for high-quality microarray processing using third-dye array visualization technology. (Wang X, Jiang N, Feng X, Xie Y, Tonellato PJ, Ghosh S, Hessner MJ) IEEE Trans Nanobioscience 2003 Dec;2(4):193-201       15 Citations
1Cross-species global and subset gene expression profiling identifies genes involved in prostate cancer response to selenium. (Schlicht M, Matysiak B, Brodzeller T, Wen X, Liu H, Zhou G, Dhir R, Hessner MJ, Tonellato P, Suckow M, Pollard M, Datta MW) BMC Genomics 2004 Aug 20;5(1):58       27 Citations
1Statistical modeling for selecting housekeeper genes. (Szabo A, Perou CM, Karaca M, Perreard L, Palais R, Quackenbush JF, Bernard PS) Genome Biol 2004;5(8):R59       154 Citations
1Expression of constitutive androstane receptor splice variants in human tissues and their functional consequences. (Lamba JK, Lamba V, Yasuda K, Lin YS, Assem M, Thompson E, Strom S, Schuetz E) J Pharmacol Exp Ther 2004 Nov;311(2):811-21       84 Citations
1Nkx2-5 pathways and congenital heart disease; loss of ventricular myocyte lineage specification leads to progressive cardiomyopathy and complete heart block. (Pashmforoush M, Lu JT, Chen H, Amand TS, Kondo R, Pradervand S, Evans SM, Clark B, Feramisco JR, Giles W, Ho SY, Benson DW, Silberbach M, Shou W, Chien KR) Cell 2004 Apr 30;117(3):373-86       319 Citations
1Gene expression profiling of potential PPARgamma target genes in mouse aorta. (Keen HL, Ryan MJ, Beyer A, Mathur S, Scheetz TE, Gackle BD, Faraci FM, Casavant TL, Sigmund CD) Physiol Genomics 2004 Jun 17;18(1):33-42       43 Citations
1Microarray analysis of retinoid-dependent gene activity during rat embryogenesis: increased collagen fibril production in a model of retinoid insufficiency. (Flentke GR, Baker MW, Docterman KE, Power S, Lough J, Smith SM) Dev Dyn 2004 Apr;229(4):886-98       14 Citations
2Effect of high glucose on gene expression in mesangial cells: upregulation of the thiol pathway is an adaptational response. (Morrison J, Knoll K, Hessner MJ, Liang M) Physiol Genomics 2004 May 19;17(3):271-82       39 Citations
2Utilization of a labeled tracking oligonucleotide for visualization and quality control of spotted 70-mer arrays. (Hessner MJ, Singh VK, Wang X, Khan S, Tschannen MR, Zahrt TC) BMC Genomics 2004 Feb 09;5(1):12       32 Citations
1A multiplex microsphere bead assay for comparative RNA expression analysis using flow cytometry. (Fuja T, Hou S, Bryant P) J Biotechnol 2004 Mar 18;108(3):193-205       24 Citations
1Difference in gene expression profiles between human CD4+CD25+ and CD4+CD25- T cells. (Pati N, Ghosh S, Hessner MJ, Khoo HJ, Wang X) Ann N Y Acad Sci 2003 Nov;1005:279-83       6 Citations
1High throughput gene expression profiling: a molecular approach to integrative physiology. (Liang M, Cowley AW, Greene AS) J Physiol 2004 Jan 01;554(Pt 1):22-30       33 Citations
1Molecular profiling of mouse lung tumors: association with tumor progression, lung development, and human lung adenocarcinomas. (Bonner AE, Lemon WJ, Devereux TR, Lubet RA, You M) Oncogene 2004 Feb 05;23(5):1166-76       80 Citations
1Multivariate exploratory tools for microarray data analysis. (Szabo A, Boucher K, Jones D, Tsodikov AD, Klebanov LB, Yakovlev AY) Biostatistics 2003 Oct;4(4):555-67       31 Citations
1Serial analysis of gene expression. (el-Meanawy MA, Barathan S, Hayden PS, Iyengar SK, Schelling JR, Sedor JR) Methods Mol Med 2003;86:257-74       3 Citations
1Quantitative quality control in microarray experiments and the application in data filtering, normalization and false positive rate prediction. (Wang X, Hessner MJ, Wu Y, Pati N, Ghosh S) Bioinformatics 2003 Jul 22;19(11):1341-7       65 Citations
1DNA expression analysis: serial analysis of gene expression, microarrays and kidney disease. (Hayden PS, El-Meanawy A, Schelling JR, Sedor JR) Curr Opin Nephrol Hypertens 2003 Jul;12(4):407-14       15 Citations
1Use of a three-color cDNA microarray platform to measure and control support-bound probe for improved data quality and reproducibility. (Hessner MJ, Wang X, Khan S, Meyer L, Schlicht M, Tackes J, Datta MW, Jacob HJ, Ghosh S) Nucleic Acids Res 2003 Jun 01;31(11):e60       41 Citations
1Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature. (Riehle MM, Bennett AF, Lenski RE, Long AD) Physiol Genomics 2003 Jun 24;14(1):47-58       62 Citations
1Differential gene expression in chemically induced mouse lung adenomas. (Yao R, Wang Y, Lubet RA, You M) Neoplasia 2003 Jan-Feb;5(1):41-52       20 Citations
1Gene discovery using a human vestibular schwannoma cDNA library constructed from a patient with neurofibromatosis type 2 (NF2). (Halum SL, Erbe CB, Friedland DR, Wackym PA) Otolaryngol Head Neck Surg 2003 Mar;128(3):364-71       2 Citations
1Genomics and homeostasis. (Cowley AW Jr) Am J Physiol Regul Integr Comp Physiol 2003 Mar;284(3):R611-27       46 Citations
1Characterization of the common fragile site FRA9E and its potential role in ovarian cancer. (Callahan G, Denison SR, Phillips LA, Shridhar V, Smith DI) Oncogene 2003 Jan 30;22(4):590-601       63 Citations
1Identification of gene expression profiles that segregate patients with childhood leukemia. (Moos PJ, Raetz EA, Carlson MA, Szabo A, Smith FE, Willman C, Wei Q, Hunger SP, Carroll WL) Clin Cancer Res 2002 Oct;8(10):3118-30       81 Citations
1Meeting report: Physiological Genomics of Cardiovascular Disease: from Technology to Physiology. (Glueck SB, Sigmund CD) Physiol Genomics 2002;9(3):135-6       1 Citation
1Generation of kidney transcriptomes using serial analysis of gene expression. (Schelling JR, El-Meanawy MA, Barathan S, Dodig T, Iyengar SK, Sedor JR) Exp Nephrol 2002;10(2):82-92       11 Citations
1PKHD1, the polycystic kidney and hepatic disease 1 gene, encodes a novel large protein containing multiple immunoglobulin-like plexin-transcription-factor domains and parallel beta-helix 1 repeats. (Onuchic LF, Furu L, Nagasawa Y, Hou X, Eggermann T, Ren Z, Bergmann C, Senderek J, Esquivel E, Zeltner R, Rudnik-Schöneborn S, Mrug M, Sweeney W, Avner ED, Zerres K, Guay-Woodford LM, Somlo S, Germino GG) Am J Hum Genet 2002 May;70(5):1305-17       347 Citations
2Renal medullary genes in salt-sensitive hypertension: a chromosomal substitution and cDNA microarray study. (Liang M, Yuan B, Rute E, Greene AS, Zou AP, Soares P, MCQuestion GD, Slocum GR, Jacob HJ, Cowley AW Jr) Physiol Genomics 2002 Feb 28;8(2):139-49       46 Citations
1Multivariate approach for selecting sets of differentially expressed genes. (Chilingaryan A, Gevorgyan N, Vardanyan A, Jones D, Szabo A) Math Biosci 2002 Mar;176(1):59-69       30 Citations
1Variable selection and pattern recognition with gene expression data generated by the microarray technology. (Szabo A, Boucher K, Carroll WL, Klebanov LB, Tsodikov AD, Yakovlev AY) Math Biosci 2002 Mar;176(1):71-98       49 Citations
1Adjustments and measures of differential expression for microarray data. (Tsodikov A, Szabo A, Jones D) Bioinformatics 2002 Feb;18(2):251-60       47 Citations
1Gene expression profiling. Methods and clinical applications in oncology. (Raetz EA, Moos PJ, Szabo A, Carroll WL) Hematol Oncol Clin North Am 2001 Oct;15(5):911-30, ix    
1Role for E2F in control of both DNA replication and mitotic functions as revealed from DNA microarray analysis. (Ishida S, Huang E, Zuzan H, Spang R, Leone G, West M, Nevins JR) Mol Cell Biol 2001 Jul;21(14):4684-99       468 Citations
1Genetically defined risk of salt sensitivity in an intercross of Brown Norway and Dahl S rats. (Cowley AW Jr, Stoll M, Greene AS, Kaldunski ML, Roman RJ, Tonellato PJ, Schork NJ, Dumas P, Jacob HJ) Physiol Genomics 2000 Apr 27;2(3):107-15       58 Citations
1The basic helix-loop-helix transcription factor capsulin controls spleen organogenesis. (Lu J, Chang P, Richardson JA, Gan L, Weiler H, Olson EN) Proc Natl Acad Sci U S A 2000 Aug 15;97(17):9525-30       96 Citations
1Global gene expression profiling in Escherichia coli K12. The effects of integration host factor. (Arfin SM, Long AD, Ito ET, Tolleri L, Riehle MM, Paegle ES, Hatfield GW) J Biol Chem 2000 Sep 22;275(38):29672-84       215 Citations
jenkins-FCD Prod-482 91ad8a360b6da540234915ea01ff80e38bfdb40a