1 | abc4pwm: affinity based clustering for position weight matrices in applications of DNA sequence analysis. (Ali O, Farooq A, Yang M, Jin VX, Bjørås M, Wang J) BMC Bioinformatics 2022 Mar 03;23(1):83 1 Citation |
1 | Discovering How Heme Controls Genome Function Through Heme-omics. (Liao R, Zheng Y, Liu X, Zhang Y, Seim G, Tanimura N, Wilson GM, Hematti P, Coon JJ, Fan J, Xu J, Keles S, Bresnick EH) Cell Rep 2020 Jun 30;31(13):107832 16 Citations |
2 | Comparative and Functional Genomic Resource for Mechanistic Studies of Human Blood Pressure-Associated Single Nucleotide Polymorphisms. (Mishra MK, Liang EY, Geurts AM, Auer PWL, Liu P, Rao S, Greene AS, Liang M, Liu Y) Hypertension 2020 Mar;75(3):859-868 12 Citations |
1 | BRCA1 mutations attenuate super-enhancer function and chromatin looping in haploinsufficient human breast epithelial cells. (Zhang X, Wang Y, Chiang HC, Hsieh YP, Lu C, Park BH, Jatoi I, Jin VX, Hu Y, Li R) Breast Cancer Res 2019 Apr 17;21(1):51 14 Citations |
1 | Degenerate minigene library analysis enables identification of altered branch point utilization by mutant splicing factor 3B1 (SF3B1). (Gupta AK, Murthy T, Paul KV, Ramirez O, Fisher JB, Rao S, Rosenberg AB, Seelig G, Minella AC, Pillai MM) Nucleic Acids Res 2019 Jan 25;47(2):970-980 5 Citations |
1 | Integrative analysis reveals functional and regulatory roles of H3K79me2 in mediating alternative splicing. (Li T, Liu Q, Garza N, Kornblau S, Jin VX) Genome Med 2018 Apr 17;10(1):30 25 Citations |
1 | Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1. (Ye Z, Chen Z, Sunkel B, Frietze S, Huang TH, Wang Q, Jin VX) Nucleic Acids Res 2016 Sep 19;44(16):7540-54 11 Citations |
1 | Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors. (Ye Z, Chen Z, Lan X, Hara S, Sunkel B, Huang TH, Elnitski L, Wang Q, Jin VX) Nucleic Acids Res 2014 Mar;42(5):2856-69 24 Citations |
1 | Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3. (Frietze S, Wang R, Yao L, Tak YG, Ye Z, Gaddis M, Witt H, Farnham PJ, Jin VX) Genome Biol 2012 Sep 26;13(9):R52 85 Citations |
1 | Using ChIPMotifs for de novo motif discovery of OCT4 and ZNF263 based on ChIP-based high-throughput experiments. (Kennedy BA, Lan X, Huang TH, Farnham PJ, Jin VX) Methods Mol Biol 2012;802:323-34 3 Citations |