Medical College of Wisconsin
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Publications indexed to the term Datasets as Topic

FacultyTitle
1Stratification of risk of progression to colectomy in ulcerative colitis via measured and predicted gene expression. (Mo A, Nagpal S, Gettler K, Haritunians T, Giri M, Haberman Y, Karns R, Prince J, Arafat D, Hsu NY, Chuang LS, Argmann C, Kasarskis A, Suarez-Farinas M, Gotman N, Mengesha E, Venkateswaran S, Rufo PA, Baker SS, Sauer CG, Markowitz J, Pfefferkorn MD, Rosh JR, Boyle BM, Mack DR, Baldassano RN, Shah S, LeLeiko NS, Heyman MB, Griffiths AM, Patel AS, Noe JD, Davis Thomas S, Aronow BJ, Walters TD, McGovern DPB, Hyams JS, Kugathasan S, Cho JH, Denson LA, Gibson G) Am J Hum Genet 2021 Sep 02;108(9):1765-1779       5 Citations
1Machine learning risk prediction of mortality for patients undergoing surgery with perioperative SARS-CoV-2: the COVIDSurg mortality score. (COVIDSurg Collaborative ) Br J Surg 2021 Nov 11;108(11):1274-1292       16 Citations
1Immunophenotype-associated gene signature in ductal breast tumors varies by receptor subtype, but the expression of individual signature genes remains consistent. (Behring M, Ye Y, Elkholy A, Bajpai P, Agarwal S, Kim HG, Ojesina AI, Wiener HW, Manne U, Shrestha S, Vazquez AI) Cancer Med 2021 Aug;10(16):5712-5720       4 Citations
1Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program. (Hu Y, Stilp AM, McHugh CP, Rao S, Jain D, Zheng X, Lane J, Méric de Bellefon S, Raffield LM, Chen MH, Yanek LR, Wheeler M, Yao Y, Ren C, Broome J, Moon JY, de Vries PS, Hobbs BD, Sun Q, Surendran P, Brody JA, Blackwell TW, Choquet H, Ryan K, Duggirala R, Heard-Costa N, Wang Z, Chami N, Preuss MH, Min N, Ekunwe L, Lange LA, Cushman M, Faraday N, Curran JE, Almasy L, Kundu K, Smith AV, Gabriel S, Rotter JI, Fornage M, Lloyd-Jones DM, Vasan RS, Smith NL, North KE, Boerwinkle E, Becker LC, Lewis JP, Abecasis GR, Hou L, O'Connell JR, Morrison AC, Beaty TH, Kaplan R, Correa A, Blangero J, Jorgenson E, Psaty BM, Kooperberg C, Walton RT, Kleinstiver BP, Tang H, Loos RJF, Soranzo N, Butterworth AS, Nickerson D, Rich SS, Mitchell BD, Johnson AD, Auer PL, Li Y, Mathias RA, Lettre G, Pankratz N, Laurie CC, Laurie CA, Bauer DE, Conomos MP, Reiner AP, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium) Am J Hum Genet 2021 May 06;108(5):874-893       22 Citations
1Clinical concept extraction using transformers. (Yang X, Bian J, Hogan WR, Wu Y) J Am Med Inform Assoc 2020 Dec 09;27(12):1935-1942       67 Citations
1From Tissue-Agnostic to N-of-One Therapies: (R)Evolution of the Precision Paradigm. (Adashek JJ, Subbiah V, Kurzrock R) Trends Cancer 2021 Jan;7(1):15-28       59 Citations
1Machine learning model to predict oncologic outcomes for drugs in randomized clinical trials. (Schperberg AV, Boichard A, Tsigelny IF, Richard SB, Kurzrock R) Int J Cancer 2020 Nov 01;147(9):2537-2549       7 Citations
1Modeling the Impact of Cardiopulmonary Irradiation on Overall Survival in NRG Oncology Trial RTOG 0617. (Thor M, Deasy JO, Hu C, Gore E, Bar-Ad V, Robinson C, Wheatley M, Oh JH, Bogart J, Garces YI, Kavadi VS, Narayan S, Iyengar P, Witt JS, Welsh JW, Koprowski CD, Larner JM, Xiao Y, Bradley J) Clin Cancer Res 2020 Sep 01;26(17):4643-4650       45 Citations
1When past is not a prologue: Adapting informatics practice during a pandemic. (Kannampallil TG, Foraker RE, Lai AM, Woeltje KF, Payne PRO) J Am Med Inform Assoc 2020 Jul 01;27(7):1142-1146       11 Citations
1Effects of Previous Medication Regimen Factors and Bipolar and Psychotic Disorders on Breast Cancer Endocrine Therapy Adherence. (Haskins CB, Neuner JM, McDowell BD, Carnahan RM, Fiedorowicz JG, Wallace RB, Smith BJ, Chrischilles EA) Clin Breast Cancer 2020 Jun;20(3):e261-e280       1 Citation
1Assessing small airway disease in GLI versus NHANES III based spirometry using area under the expiratory flow-volume curve. (Ioachimescu OC, Stoller JK) BMJ Open Respir Res 2019;6(1):e000511       5 Citations
1Impact of Patient Frailty on Morbidity and Mortality after Common Emergency General Surgery Operations. (Murphy PB, Savage SA, Zarzaur BL) J Surg Res 2020 Mar;247:95-102       34 Citations
1Recent Trends in Squamous Cell Carcinoma of the Anus Incidence and Mortality in the United States, 2001-2015. (Deshmukh AA, Suk R, Shiels MS, Sonawane K, Nyitray AG, Liu Y, Gaisa MM, Palefsky JM, Sigel K) J Natl Cancer Inst 2020 Aug 01;112(8):829-838       171 Citations
1Integrated pan-cancer gene expression and drug sensitivity analysis reveals SLFN11 mRNA as a solid tumor biomarker predictive of sensitivity to DNA-damaging chemotherapy. (Shee K, Wells JD, Jiang A, Miller TW) PLoS One 2019;14(11):e0224267       26 Citations
1Molecular and epigenetic profiles of BRCA1-like hormone-receptor-positive breast tumors identified with development and application of a copy-number-based classifier. (Chen Y, Wang Y, Salas LA, Miller TW, Mark K, Marotti JD, Kettenbach AN, Cheng C, Christensen BC) Breast Cancer Res 2019 Jan 25;21(1):14       5 Citations
1The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5-21 year olds. (Somerville LH, Bookheimer SY, Buckner RL, Burgess GC, Curtiss SW, Dapretto M, Elam JS, Gaffrey MS, Harms MP, Hodge C, Kandala S, Kastman EK, Nichols TE, Schlaggar BL, Smith SM, Thomas KM, Yacoub E, Van Essen DC, Barch DM) Neuroimage 2018 Dec;183:456-468       118 Citations
1Big data: More than big data sets. (Cobb AN, Benjamin AJ, Huang ES, Kuo PC) Surgery 2018 Oct;164(4):640-642       20 Citations
1Cancerin: A computational pipeline to infer cancer-associated ceRNA interaction networks. (Do D, Bozdag S) PLoS Comput Biol 2018 Jul;14(7):e1006318       18 Citations
1Comparing and Contrasting A Priori and A Posteriori Generalizability Assessment of Clinical Trials on Type 2 Diabetes Mellitus. (He Z, Gonzalez-Izquierdo A, Denaxas S, Sura A, Guo Y, Hogan WR, Shenkman E, Bian J) AMIA Annu Symp Proc 2017;2017:849-858       3 Citations
2Multisite Concordance of DSC-MRI Analysis for Brain Tumors: Results of a National Cancer Institute Quantitative Imaging Network Collaborative Project. (Schmainda KM, Prah MA, Rand SD, Liu Y, Logan B, Muzi M, Rane SD, Da X, Yen YF, Kalpathy-Cramer J, Chenevert TL, Hoff B, Ross B, Cao Y, Aryal MP, Erickson B, Korfiatis P, Dondlinger T, Bell L, Hu L, Kinahan PE, Quarles CC) AJNR Am J Neuroradiol 2018 Jun;39(6):1008-1016       38 Citations
1The impact of pharmacokinetic gene profiles across human cancers. (Zimmermann MT, Therneau TM, Kocher JA) BMC Cancer 2018 May 21;18(1):577       3 Citations
3Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes. (Lomberk G, Blum Y, Nicolle R, Nair A, Gaonkar KS, Marisa L, Mathison A, Sun Z, Yan H, Elarouci N, Armenoult L, Ayadi M, Ordog T, Lee JH, Oliver G, Klee E, Moutardier V, Gayet O, Bian B, Duconseil P, Gilabert M, Bigonnet M, Garcia S, Turrini O, Delpero JR, Giovannini M, Grandval P, Gasmi M, Secq V, De Reyniès A, Dusetti N, Iovanna J, Urrutia R) Nat Commun 2018 May 17;9(1):1978       157 Citations
1Practical Guide to Surgical Data Sets: Medicare Claims Data. (Ghaferi AA, Dimick JB) JAMA Surg 2018 Jul 01;153(7):677-678       25 Citations
2Pancreatic Adenocarcinoma Therapeutic Targets Revealed by Tumor-Stroma Cross-Talk Analyses in Patient-Derived Xenografts. (Nicolle R, Blum Y, Marisa L, Loncle C, Gayet O, Moutardier V, Turrini O, Giovannini M, Bian B, Bigonnet M, Rubis M, Elarouci N, Armenoult L, Ayadi M, Duconseil P, Gasmi M, Ouaissi M, Maignan A, Lomberk G, Boher JM, Ewald J, Bories E, Garnier J, Goncalves A, Poizat F, Raoul JL, Secq V, Garcia S, Grandval P, Barraud-Blanc M, Norguet E, Gilabert M, Delpero JR, Roques J, Calvo E, Guillaumond F, Vasseur S, Urrutia R, de Reyniès A, Dusetti N, Iovanna J) Cell Rep 2017 Nov 28;21(9):2458-2470       135 Citations
4Perioperative bleeding and blood transfusion are major risk factors for venous thromboembolism following bariatric surgery. (Nielsen AW, Helm MC, Kindel T, Higgins R, Lak K, Helmen ZM, Gould JC) Surg Endosc 2018 May;32(5):2488-2495       32 Citations
1Transcriptional risk scores link GWAS to eQTLs and predict complications in Crohn's disease. (Marigorta UM, Denson LA, Hyams JS, Mondal K, Prince J, Walters TD, Griffiths A, Noe JD, Crandall WV, Rosh JR, Mack DR, Kellermayer R, Heyman MB, Baker SS, Stephens MC, Baldassano RN, Markowitz JF, Kim MO, Dubinsky MC, Cho J, Aronow BJ, Kugathasan S, Gibson G) Nat Genet 2017 Oct;49(10):1517-1521       109 Citations
1Multisite external validation of a risk prediction model for the diagnosis of blood stream infections in febrile pediatric oncology patients without severe neutropenia. (Esbenshade AJ, Zhao Z, Aftandilian C, Saab R, Wattier RL, Beauchemin M, Miller TP, Wilkes JJ, Kelly MJ, Fernbach A, Jeng M, Schwartz CL, Dvorak CC, Shyr Y, Moons KGM, Sulis ML, Friedman DL) Cancer 2017 Oct 01;123(19):3781-3790       18 Citations