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Akinyemi Ojesina MD, PhD

Akinyemi Ojesina MD, PhD profile photo picture

Assistant Professor

Institution: Medical College of Wisconsin
Department: Obstetrics and Gynecology
Division: Research and Advanced Education
Program: Medical Education and Research

Member of the Cancer Center


I am willing to mentor a junior faculty member.
I am willing to collaborate on research projects.


Publications (61)

  • Genome-wide variants and polygenic risk scores for cognitive impairment following blood or marrow transplantation. (Sharafeldin N, Zhang J, Singh P, Bosworth A, Chen Y, Patel SK, Wang X, Francisco L, Forman SJ, Wong FL, Ojesina AI, Bhatia S) Bone Marrow Transplant 2022 Jun;57(6):925-933 PMID: 35379913 PMCID: PMC9233077 SCOPUS ID: 2-s2.0-85127536986 04/06/2022    
  • Partnership status and retention in care among cisgender heterosexual newly diagnosed people with HIV: a cohort study. (Sohail M, Long DM, Mugavero MJ, Batey DS, Ojesina AI, Levitan EB) AIDS Care 2022 Mar 29:1-9 PMID: 35348413 PMCID: PMC9519801 SCOPUS ID: 2-s2.0-85127686722 03/30/2022    
  • Partnership status and time to viral suppression and sustained viral suppression among newly diagnosed heterosexual people with HIV. (Sohail M, Long DM, Batey DS, Mugavero MJ, Ojesina AI, Levitan EB) Int J STD AIDS 2022 Mar;33(4):347-354 PMID: 35085052 PMCID: PMC9364114 SCOPUS ID: 2-s2.0-85124105567 01/28/2022    
  • Genomic alterations associated with mutational signatures, DNA damage repair and chromatin remodeling pathways in cervical carcinoma. (Halle MK, Sundaresan A, Zhang J, Pedamallu CS, Srinivasasainagendra V, Blair J, Brooke D, Bertelsen BI, Woie K, Shrestha S, Tiwari H, Wong YF, Krakstad C, Ojesina AI) NPJ Genom Med 2021 Oct 07;6(1):82 PMID: 34620846 PMCID: PMC8497615 SCOPUS ID: 2-s2.0-85116511399 10/09/2021       2 Citations
  • Genomic Characterization and Therapeutic Targeting of HPV Undetected Cervical Carcinomas. (Ruiz FJ, Sundaresan A, Zhang J, Pedamallu CS, Halle MK, Srinivasasainagendra V, Zhang J, Muhammad N, Stanley J, Markovina S, Tiwari HK, Grigsby PW, Krakstad C, Schwarz JK, Ojesina AI) Cancers (Basel) 2021 Sep 10;13(18) PMID: 34572780 PMCID: PMC8467954 SCOPUS ID: 2-s2.0-85114596552 09/29/2021       9 Citations
  • Treatment-related Correlates of Growth in Children With Sickle Cell Disease in the DISPLACE Cohort. (Galadanci NA, Sohail M, Akinyelure OP, Kanter J, Ojesina AI) J Pediatr Hematol Oncol 2022 Jul 01;44(5):249-254 PMID: 34486556 PMCID: PMC8898314 SCOPUS ID: 2-s2.0-85117265584 09/07/2021       1 Citation
  • Dissection of PIK3CA Aberration for Cervical Adenocarcinoma Outcomes. (Chung TKH, Doran G, Cheung TH, Yim SF, Yu MY, Worley MJ Jr, Elias KM, Thorner AR, Pedamallu CS, Ojesina AI, Lau KM, Ducar MD, Wong RRY, Wang VW, Nag A, Wollison BM, Dalgarno A, Lee JHS, Yeung SY, Wong L, Horowitz NS, Davis MR, Leung SA, Mu Y, Mok SC, Chan PKS, Lawrence MS, Crum CP, Chiu RWK, Berkowitz RS, Wong YF) Cancers (Basel) 2021 Jun 28;13(13) PMID: 34203201 PMCID: PMC8269188 SCOPUS ID: 2-s2.0-85108696152 07/03/2021    
  • Immunophenotype-associated gene signature in ductal breast tumors varies by receptor subtype, but the expression of individual signature genes remains consistent. (Behring M, Ye Y, Elkholy A, Bajpai P, Agarwal S, Kim HG, Ojesina AI, Wiener HW, Manne U, Shrestha S, Vazquez AI) Cancer Med 2021 Aug;10(16):5712-5720 PMID: 34189853 PMCID: PMC8366080 SCOPUS ID: 2-s2.0-85108954858 07/01/2021    
  • A 10-gene prognostic signature points to LIMCH1 and HLA-DQB1 as important players in aggressive cervical cancer disease. (Halle MK, Sødal M, Forsse D, Engerud H, Woie K, Lura NG, Wagner-Larsen KS, Trovik J, Bertelsen BI, Haldorsen IS, Ojesina AI, Krakstad C) Br J Cancer 2021 May;124(10):1690-1698 PMID: 33723390 PMCID: PMC8110544 SCOPUS ID: 2-s2.0-85102563831 03/17/2021       8 Citations
  • Inhibiting β-catenin disables nucleolar functions in triple-negative breast cancer. (Weeks SE, Kammerud SC, Metge BJ, AlSheikh HA, Schneider DA, Chen D, Wei S, Mobley JA, Ojesina AI, Shevde LA, Samant RS) Cell Death Dis 2021 Mar 04;12(3):242 PMID: 33664239 PMCID: PMC7933177 SCOPUS ID: 2-s2.0-85102032030 03/06/2021       6 Citations
  • Race/ethnicity, sex and insurance disparities in colorectal cancer screening among individuals with and without cardiovascular disease. (Sakhuja S, Fowler ME, Ojesina AI) Prev Med Rep 2021 Mar;21:101263 PMID: 33391980 PMCID: PMC7773575 SCOPUS ID: 2-s2.0-85098766038 01/05/2021       1 Citation
  • Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. (Bailey MH, Meyerson WU, Dursi LJ, Wang LB, Dong G, Liang WW, Weerasinghe A, Li S, Li Y, Kelso S, MC3 Working Group, PCAWG novel somatic mutation calling methods working group, Saksena G, Ellrott K, Wendl MC, Wheeler DA, Getz G, Simpson JT, Gerstein MB, Ding L, PCAWG Consortium) Nat Commun 2020 Nov 30;11(1):6232 PMID: 33257764 PMCID: PMC7705717 SCOPUS ID: 2-s2.0-85096915769 12/02/2020    
  • Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. (Bailey MH, Meyerson WU, Dursi LJ, Wang LB, Dong G, Liang WW, Weerasinghe A, Li S, Li Y, Kelso S, MC3 Working Group, PCAWG novel somatic mutation calling methods working group, Saksena G, Ellrott K, Wendl MC, Wheeler DA, Getz G, Simpson JT, Gerstein MB, Ding L, PCAWG Consortium) Nat Commun 2020 Sep 21;11(1):4748 PMID: 32958763 PMCID: PMC7505971 SCOPUS ID: 2-s2.0-85079069163 09/23/2020       17 Citations
  • HPV-EM: an accurate HPV detection and genotyping EM algorithm. (Inkman MJ, Jayachandran K, Ellis TM, Ruiz F, McLellan MD, Miller CA, Wu Y, Ojesina AI, Schwarz JK, Zhang J) Sci Rep 2020 Aug 31;10(1):14340 PMID: 32868873 PMCID: PMC7459114 SCOPUS ID: 2-s2.0-85089995588 09/02/2020       1 Citation
  • Sex differences in oncogenic mutational processes. (Li CH, Prokopec SD, Sun RX, Yousif F, Schmitz N, PCAWG Tumour Subtypes and Clinical Translation, Boutros PC, PCAWG Consortium) Nat Commun 2020 Aug 28;11(1):4330 PMID: 32859912 PMCID: PMC7455744 SCOPUS ID: 2-s2.0-85079052881 08/30/2020       32 Citations
  • Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes. (Gagliardi A, Porter VL, Zong Z, Bowlby R, Titmuss E, Namirembe C, Griner NB, Petrello H, Bowen J, Chan SK, Culibrk L, Darragh TM, Stoler MH, Wright TC, Gesuwan P, Dyer MA, Ma Y, Mungall KL, Jones SJM, Nakisige C, Novik K, Orem J, Origa M, Gastier-Foster JM, Yarchoan R, Casper C, Mills GB, Rader JS, Ojesina AI, Gerhard DS, Mungall AJ, Marra MA) Nat Genet 2020 Aug;52(8):800-810 PMID: 32747824 PMCID: PMC7498180 SCOPUS ID: 2-s2.0-85088926535 08/05/2020       22 Citations
  • Pan-cancer analysis of whole genomes. (ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium) Nature 2020 Feb;578(7793):82-93 PMID: 32025007 PMCID: PMC7025898 SCOPUS ID: 2-s2.0-85079038817 02/07/2020       966 Citations
  • Genomic basis for RNA alterations in cancer. (PCAWG Transcriptome Core Group, Calabrese C, Davidson NR, Demircioğlu D, Fonseca NA, He Y, Kahles A, Lehmann KV, Liu F, Shiraishi Y, Soulette CM, Urban L, Greger L, Li S, Liu D, Perry MD, Xiang Q, Zhang F, Zhang J, Bailey P, Erkek S, Hoadley KA, Hou Y, Huska MR, Kilpinen H, Korbel JO, Marin MG, Markowski J, Nandi T, Pan-Hammarström Q, Pedamallu CS, Siebert R, Stark SG, Su H, Tan P, Waszak SM, Yung C, Zhu S, Awadalla P, Creighton CJ, Meyerson M, Ouellette BFF, Wu K, Yang H, PCAWG Transcriptome Working Group, Brazma A, Brooks AN, Göke J, Rätsch G, Schwarz RF, Stegle O, Zhang Z, PCAWG Consortium) Nature 2020 Feb;578(7793):129-136 PMID: 32025019 PMCID: PMC7054216 SCOPUS ID: 2-s2.0-85079073184 02/07/2020       155 Citations
  • The landscape of viral associations in human cancers. (Zapatka M, Borozan I, Brewer DS, Iskar M, Grundhoff A, Alawi M, Desai N, Sültmann H, Moch H, PCAWG Pathogens, Cooper CS, Eils R, Ferretti V, Lichter P, PCAWG Consortium) Nat Genet 2020 Mar;52(3):320-330 PMID: 32025001 PMCID: PMC8076016 SCOPUS ID: 2-s2.0-85079063026 02/07/2020       138 Citations
  • High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. (Zhang Y, Chen F, Fonseca NA, He Y, Fujita M, Nakagawa H, Zhang Z, Brazma A, PCAWG Transcriptome Working Group, PCAWG Structural Variation Working Group, Creighton CJ, PCAWG Consortium) Nat Commun 2020 Feb 05;11(1):736 PMID: 32024823 PMCID: PMC7002524 SCOPUS ID: 2-s2.0-85079031729 02/07/2020       30 Citations
  • Gain of function in somatic TP53 mutations is associated with immune-rich breast tumors and changes in tumor-associated macrophages. (Behring M, Vazquez AI, Cui X, Irvin MR, Ojesina AI, Agarwal S, Manne U, Shrestha S) Mol Genet Genomic Med 2019 Dec;7(12):e1001 PMID: 31637877 PMCID: PMC6900370 SCOPUS ID: 2-s2.0-85074329703 10/23/2019       6 Citations
  • The Immune Landscape of Cancer. (Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Ou Yang TH, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, Ziv E, Culhane AC, Paull EO, Sivakumar IKA, Gentles AJ, Malhotra R, Farshidfar F, Colaprico A, Parker JS, Mose LE, Vo NS, Liu J, Liu Y, Rader J, Dhankani V, Reynolds SM, Bowlby R, Califano A, Cherniack AD, Anastassiou D, Bedognetti D, Mokrab Y, Newman AM, Rao A, Chen K, Krasnitz A, Hu H, Malta TM, Noushmehr H, Pedamallu CS, Bullman S, Ojesina AI, Lamb A, Zhou W, Shen H, Choueiri TK, Weinstein JN, Guinney J, Saltz J, Holt RA, Rabkin CS, Cancer Genome Atlas Research Network, Lazar AJ, Serody JS, Demicco EG, Disis ML, Vincent BG, Shmulevich I) Immunity 2019 Aug 20;51(2):411-412 PMID: 31433971 SCOPUS ID: 2-s2.0-85070213901 08/23/2019       126 Citations
  • Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenström macroglobulinemia. (McMaster ML, Berndt SI, Zhang J, Slager SL, Li SA, Vajdic CM, Smedby KE, Yan H, Birmann BM, Brown EE, Smith A, Kleinstern G, Fansler MM, Mayr C, Zhu B, Chung CC, Park JH, Burdette L, Hicks BD, Hutchinson A, Teras LR, Adami HO, Bracci PM, McKay J, Monnereau A, Link BK, Vermeulen RCH, Ansell SM, Maria A, Diver WR, Melbye M, Ojesina AI, Kraft P, Boffetta P, Clavel J, Giovannucci E, Besson CM, Canzian F, Travis RC, Vineis P, Weiderpass E, Montalvan R, Wang Z, Yeager M, Becker N, Benavente Y, Brennan P, Foretova L, Maynadie M, Nieters A, de Sanjose S, Staines A, Conde L, Riby J, Glimelius B, Hjalgrim H, Pradhan N, Feldman AL, Novak AJ, Lawrence C, Bassig BA, Lan Q, Zheng T, North KE, Tinker LF, Cozen W, Severson RK, Hofmann JN, Zhang Y, Jackson RD, Morton LM, Purdue MP, Chatterjee N, Offit K, Cerhan JR, Chanock SJ, Rothman N, Vijai J, Goldin LR, Skibola CF, Caporaso NE) Nat Commun 2018 Oct 10;9(1):4182 PMID: 30305637 PMCID: PMC6180091 SCOPUS ID: 2-s2.0-85054606609 10/12/2018       8 Citations
  • Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer. (Robertson AG, Kim J, Al-Ahmadie H, Bellmunt J, Guo G, Cherniack AD, Hinoue T, Laird PW, Hoadley KA, Akbani R, Castro MAA, Gibb EA, Kanchi RS, Gordenin DA, Shukla SA, Sanchez-Vega F, Hansel DE, Czerniak BA, Reuter VE, Su X, de Sa Carvalho B, Chagas VS, Mungall KL, Sadeghi S, Pedamallu CS, Lu Y, Klimczak LJ, Zhang J, Choo C, Ojesina AI, Bullman S, Leraas KM, Lichtenberg TM, Wu CJ, Schultz N, Getz G, Meyerson M, Mills GB, McConkey DJ, TCGA Research Network, Weinstein JN, Kwiatkowski DJ, Lerner SP) Cell 2018 Aug 09;174(4):1033 PMID: 30096301 PMCID: PMC6297116 SCOPUS ID: 2-s2.0-85050868685 08/11/2018       140 Citations
  • GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts. (Walker MA, Pedamallu CS, Ojesina AI, Bullman S, Sharpe T, Whelan CW, Meyerson M) Bioinformatics 2018 Dec 15;34(24):4287-4289 PMID: 29982281 PMCID: PMC6289130 SCOPUS ID: 2-s2.0-85058495941 07/10/2018       36 Citations
  • The Immune Landscape of Cancer. (Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Ou Yang TH, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, Ziv E, Culhane AC, Paull EO, Sivakumar IKA, Gentles AJ, Malhotra R, Farshidfar F, Colaprico A, Parker JS, Mose LE, Vo NS, Liu J, Liu Y, Rader J, Dhankani V, Reynolds SM, Bowlby R, Califano A, Cherniack AD, Anastassiou D, Bedognetti D, Mokrab Y, Newman AM, Rao A, Chen K, Krasnitz A, Hu H, Malta TM, Noushmehr H, Pedamallu CS, Bullman S, Ojesina AI, Lamb A, Zhou W, Shen H, Choueiri TK, Weinstein JN, Guinney J, Saltz J, Holt RA, Rabkin CS, Cancer Genome Atlas Research Network, Lazar AJ, Serody JS, Demicco EG, Disis ML, Vincent BG, Shmulevich I) Immunity 2018 Apr 17;48(4):812-830.e14 PMID: 29628290 PMCID: PMC5982584 SCOPUS ID: 2-s2.0-85044934017 04/10/2018       2047 Citations
  • A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. (Berger AC, Korkut A, Kanchi RS, Hegde AM, Lenoir W, Liu W, Liu Y, Fan H, Shen H, Ravikumar V, Rao A, Schultz A, Li X, Sumazin P, Williams C, Mestdagh P, Gunaratne PH, Yau C, Bowlby R, Robertson AG, Tiezzi DG, Wang C, Cherniack AD, Godwin AK, Kuderer NM, Rader JS, Zuna RE, Sood AK, Lazar AJ, Ojesina AI, Adebamowo C, Adebamowo SN, Baggerly KA, Chen TW, Chiu HS, Lefever S, Liu L, MacKenzie K, Orsulic S, Roszik J, Shelley CS, Song Q, Vellano CP, Wentzensen N, Cancer Genome Atlas Research Network, Weinstein JN, Mills GB, Levine DA, Akbani R) Cancer Cell 2018 Apr 09;33(4):690-705.e9 PMID: 29622464 PMCID: PMC5959730 SCOPUS ID: 2-s2.0-85044909989 04/07/2018       290 Citations
  • Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas. (Liu Y, Sethi NS, Hinoue T, Schneider BG, Cherniack AD, Sanchez-Vega F, Seoane JA, Farshidfar F, Bowlby R, Islam M, Kim J, Chatila W, Akbani R, Kanchi RS, Rabkin CS, Willis JE, Wang KK, McCall SJ, Mishra L, Ojesina AI, Bullman S, Pedamallu CS, Lazar AJ, Sakai R, Cancer Genome Atlas Research Network, Thorsson V, Bass AJ, Laird PW) Cancer Cell 2018 Apr 09;33(4):721-735.e8 PMID: 29622466 PMCID: PMC5966039 SCOPUS ID: 2-s2.0-85044904369 04/07/2018       258 Citations
  • Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas. (Campbell JD, Yau C, Bowlby R, Liu Y, Brennan K, Fan H, Taylor AM, Wang C, Walter V, Akbani R, Byers LA, Creighton CJ, Coarfa C, Shih J, Cherniack AD, Gevaert O, Prunello M, Shen H, Anur P, Chen J, Cheng H, Hayes DN, Bullman S, Pedamallu CS, Ojesina AI, Sadeghi S, Mungall KL, Robertson AG, Benz C, Schultz A, Kanchi RS, Gay CM, Hegde A, Diao L, Wang J, Ma W, Sumazin P, Chiu HS, Chen TW, Gunaratne P, Donehower L, Rader JS, Zuna R, Al-Ahmadie H, Lazar AJ, Flores ER, Tsai KY, Zhou JH, Rustgi AK, Drill E, Shen R, Wong CK, Cancer Genome Atlas Research Network, Stuart JM, Laird PW, Hoadley KA, Weinstein JN, Peto M, Pickering CR, Chen Z, Van Waes C) Cell Rep 2018 Apr 03;23(1):194-212.e6 PMID: 29617660 PMCID: PMC6002769 SCOPUS ID: 2-s2.0-85044610513 04/05/2018       160 Citations
  • Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer. (Robertson AG, Kim J, Al-Ahmadie H, Bellmunt J, Guo G, Cherniack AD, Hinoue T, Laird PW, Hoadley KA, Akbani R, Castro MAA, Gibb EA, Kanchi RS, Gordenin DA, Shukla SA, Sanchez-Vega F, Hansel DE, Czerniak BA, Reuter VE, Su X, de Sa Carvalho B, Chagas VS, Mungall KL, Sadeghi S, Pedamallu CS, Lu Y, Klimczak LJ, Zhang J, Choo C, Ojesina AI, Bullman S, Leraas KM, Lichtenberg TM, Wu CJ, Schultz N, Getz G, Meyerson M, Mills GB, McConkey DJ, TCGA Research Network, Weinstein JN, Kwiatkowski DJ, Lerner SP) Cell 2017 Oct 19;171(3):540-556.e25 PMID: 28988769 PMCID: PMC5687509 SCOPUS ID: 2-s2.0-85030652738 10/11/2017       1106 Citations
  • Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles. (Farshidfar F, Zheng S, Gingras MC, Newton Y, Shih J, Robertson AG, Hinoue T, Hoadley KA, Gibb EA, Roszik J, Covington KR, Wu CC, Shinbrot E, Stransky N, Hegde A, Yang JD, Reznik E, Sadeghi S, Pedamallu CS, Ojesina AI, Hess JM, Auman JT, Rhie SK, Bowlby R, Borad MJ, Cancer Genome Atlas Network, Zhu AX, Stuart JM, Sander C, Akbani R, Cherniack AD, Deshpande V, Mounajjed T, Foo WC, Torbenson MS, Kleiner DE, Laird PW, Wheeler DA, McRee AJ, Bathe OF, Andersen JB, Bardeesy N, Roberts LR, Kwong LN) Cell Rep 2017 Jun 27;19(13):2878-2880 PMID: 28658632 PMCID: PMC6141445 SCOPUS ID: 2-s2.0-85021360691 06/29/2017       101 Citations
  • Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. (Cancer Genome Atlas Research Network. Electronic address: wheeler@bcm.edu, Cancer Genome Atlas Research Network) Cell 2017 Jun 15;169(7):1327-1341.e23 PMID: 28622513 PMCID: PMC5680778 SCOPUS ID: 2-s2.0-85020833799 06/18/2017       1114 Citations
  • Clinicopathologic and molecular markers in cervical carcinoma: a prospective cohort study. (Halle MK, Ojesina AI, Engerud H, Woie K, Tangen IL, Holst F, Høivik E, Kusonmano K, Haldorsen IS, Vintermyr OK, Trovik J, Bertelsen BI, Salvesen HB, Krakstad C) Am J Obstet Gynecol 2017 Oct;217(4):432.e1-432.e17 PMID: 28599900 SCOPUS ID: 2-s2.0-85024907854 06/11/2017       28 Citations
  • Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles. (Farshidfar F, Zheng S, Gingras MC, Newton Y, Shih J, Robertson AG, Hinoue T, Hoadley KA, Gibb EA, Roszik J, Covington KR, Wu CC, Shinbrot E, Stransky N, Hegde A, Yang JD, Reznik E, Sadeghi S, Pedamallu CS, Ojesina AI, Hess JM, Auman JT, Rhie SK, Bowlby R, Borad MJ, Cancer Genome Atlas Network, Zhu AX, Stuart JM, Sander C, Akbani R, Cherniack AD, Deshpande V, Mounajjed T, Foo WC, Torbenson MS, Kleiner DE, Laird PW, Wheeler DA, McRee AJ, Bathe OF, Andersen JB, Bardeesy N, Roberts LR, Kwong LN) Cell Rep 2017 Mar 14;18(11):2780-2794 PMID: 28297679 PMCID: PMC5493145 SCOPUS ID: 2-s2.0-85015247880 03/16/2017       270 Citations
  • Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn's Disease. (Pedamallu CS, Bhatt AS, Bullman S, Fowler S, Freeman SS, Durand J, Jung J, Duke F, Manzo V, Cai D, Ananthakrishnan A, Ojesina AI, Ramachandran A, Gevers D, Xavier RJ, Bhan AK, Meyerson M, Yajnik V) Cell Mol Gastroenterol Hepatol 2016 Sep;2(5):563-566.e5 PMID: 28174737 PMCID: PMC5042890 SCOPUS ID: 2-s2.0-84997831786 02/09/2017       19 Citations
  • Integrated genomic and molecular characterization of cervical cancer. (Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of São Paulo, Ribeir ão Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis) Nature 2017 Mar 16;543(7645):378-384 PMID: 28112728 PMCID: PMC5354998 SCOPUS ID: 2-s2.0-85016138846 01/24/2017       790 Citations
  • Pathway-Structured Predictive Model for Cancer Survival Prediction: A Two-Stage Approach. (Zhang X, Li Y, Akinyemiju T, Ojesina AI, Buckhaults P, Liu N, Xu B, Yi N) Genetics 2017 Jan;205(1):89-100 PMID: 28049703 PMCID: PMC5223526 SCOPUS ID: 2-s2.0-85008477467 01/05/2017       28 Citations
  • Integrated genomic characterization of oesophageal carcinoma. (Cancer Genome Atlas Research Network, Analysis Working Group: Asan University, BC Cancer Agency, Brigham and Women’s Hospital, Broad Institute, Brown University, Case Western Reserve University, Dana-Farber Cancer Institute, Duke University, Greater Poland Cancer Centre, Harvard Medical School, Institute for Systems Biology, KU Leuven, Mayo Clinic, Memorial Sloan Kettering Cancer Center, National Cancer Institute, Nationwide Children’s Hospital, Stanford University, University of Alabama, University of Michigan, University of North Carolina, University of Pittsburgh, University of Rochester, University of Southern California, University of Texas MD Anderson Cancer Center, University of Washington, Van Andel Research Institute, Vanderbilt University, Washington University, Genome Sequencing Center: Broad Institute, Washington University in St. Louis, Genome Characterization Centers: BC Cancer Agency, Broad Institute, Harvard Medical School, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of North Carolina, University of Southern California Epigenome Center, University of Texas MD Anderson Cancer Center, Van Andel Research Institute, Genome Data Analysis Centers: Broad Institute, Brown University:, Harvard Medical School, Institute for Systems Biology, Memorial Sloan Kettering Cancer Center, University of California Santa Cruz, University of Texas MD Anderson Cancer Center, Biospecimen Core Resource: International Genomics Consortium, Research Institute at Nationwide Children’s Hospital, Tissue Source Sites: Analytic Biologic Services, Asan Medical Center, Asterand Bioscience, Barretos Cancer Hospital, BioreclamationIVT, Botkin Municipal Clinic, Chonnam National University Medical School, Christiana Care Health System, Cureline, Duke University, Emory University, Erasmus University, Indiana University School of Medicine, Institute of Oncology of Moldova, International Genomics Consortium, Invidumed, Israelitisches Krankenhaus Hamburg, Keimyung University School of Medicine, Memorial Sloan Kettering Cancer Center, National Cancer Center Goyang, Ontario Tumour Bank, Peter MacCallum Cancer Centre, Pusan National University Medical School, Ribeirão Preto Medical School, St. Joseph’s Hospital &Medical Center, St. Petersburg Academic University, Tayside Tissue Bank, University of Dundee, University of Kansas Medical Center, University of Michigan, University of North Carolina at Chapel Hill, University of Pittsburgh School of Medicine, University of Texas MD Anderson Cancer Center, Disease Working Group: Duke University, Memorial Sloan Kettering Cancer Center, National Cancer Institute, University of Texas MD Anderson Cancer Center, Yonsei University College of Medicine, Data Coordination Center: CSRA Inc., Project Team: National Institutes of Health) Nature 2017 Jan 12;541(7636):169-175 PMID: 28052061 PMCID: PMC5651175 SCOPUS ID: 2-s2.0-85016278868 01/05/2017       983 Citations
  • A two-stage approach for combining gene expression and mutation with clinical data improves survival prediction in myelodysplastic syndromes and ovarian cancer. (Li Y, Zhang X, Akinyemiju T, Ojesina AI, Szychowski JM, Liu N, Xu B, Yi N) J Bioinform Genom 2016 Sep;1(1) PMID: 34377946 PMCID: PMC8351588 09/01/2016    
  • Notch Signaling Activation Is Associated with Patient Mortality and Increased FGF1-Mediated Invasion in Squamous Cell Carcinoma of the Oral Cavity. (Weaver AN, Burch MB, Cooper TS, Della Manna DL, Wei S, Ojesina AI, Rosenthal EL, Yang ES) Mol Cancer Res 2016 Sep;14(9):883-91 PMID: 27353029 SCOPUS ID: 2-s2.0-84987904917 06/30/2016       22 Citations
  • Racial disparities in individual breast cancer outcomes by hormone-receptor subtype, area-level socio-economic status and healthcare resources. (Akinyemiju T, Moore JX, Ojesina AI, Waterbor JW, Altekruse SF) Breast Cancer Res Treat 2016 Jun;157(3):575-86 PMID: 27255533 PMCID: PMC4912843 SCOPUS ID: 2-s2.0-84973118016 06/04/2016       49 Citations
  • The tumor virus landscape of AIDS-related lymphomas. (Arvey A, Ojesina AI, Pedamallu CS, Ballon G, Jung J, Duke F, Leoncini L, De Falco G, Bressman E, Tam W, Chadburn A, Meyerson M, Cesarman E) Blood 2015 May 14;125(20):e14-22 PMID: 25827832 PMCID: PMC4432014 SCOPUS ID: 2-s2.0-84945466762 04/02/2015       47 Citations
  • Genomic aberrations in cervical adenocarcinomas in Hong Kong Chinese women. (Chung TK, Van Hummelen P, Chan PK, Cheung TH, Yim SF, Yu MY, Ducar MD, Thorner AR, MacConaill LE, Doran G, Pedamallu CS, Ojesina AI, Wong RR, Wang VW, Freeman SS, Lau TS, Kwong J, Chan LK, Fromer M, May T, Worley MJ Jr, Esselen KM, Elias KM, Lawrence M, Getz G, Smith DI, Crum CP, Meyerson M, Berkowitz RS, Wong YF) Int J Cancer 2015 Aug 15;137(4):776-83 PMID: 25626421 SCOPUS ID: 2-s2.0-84931562257 01/30/2015       36 Citations
  • Comprehensive genomic characterization of head and neck squamous cell carcinomas. (Cancer Genome Atlas Network) Nature 2015 Jan 29;517(7536):576-82 PMID: 25631445 PMCID: PMC4311405 SCOPUS ID: 2-s2.0-84923197605 01/30/2015       2401 Citations
  • Integrated genomic characterization of papillary thyroid carcinoma. (Cancer Genome Atlas Research Network) Cell 2014 Oct 23;159(3):676-90 PMID: 25417114 PMCID: PMC4243044 SCOPUS ID: 2-s2.0-84908335908 11/25/2014       1763 Citations
  • Characterization of HPV and host genome interactions in primary head and neck cancers. (Parfenov M, Pedamallu CS, Gehlenborg N, Freeman SS, Danilova L, Bristow CA, Lee S, Hadjipanayis AG, Ivanova EV, Wilkerson MD, Protopopov A, Yang L, Seth S, Song X, Tang J, Ren X, Zhang J, Pantazi A, Santoso N, Xu AW, Mahadeshwar H, Wheeler DA, Haddad RI, Jung J, Ojesina AI, Issaeva N, Yarbrough WG, Hayes DN, Grandis JR, El-Naggar AK, Meyerson M, Park PJ, Chin L, Seidman JG, Hammerman PS, Kucherlapati R, Cancer Genome Atlas Network) Proc Natl Acad Sci U S A 2014 Oct 28;111(43):15544-9 PMID: 25313082 PMCID: PMC4217452 SCOPUS ID: 2-s2.0-84908261808 10/15/2014       232 Citations
  • Comprehensive molecular characterization of gastric adenocarcinoma. (Cancer Genome Atlas Research Network) Nature 2014 Sep 11;513(7517):202-9 PMID: 25079317 PMCID: PMC4170219 SCOPUS ID: 2-s2.0-84907270779 08/01/2014       3790 Citations
  • Landscape of genomic alterations in cervical carcinomas. (Ojesina AI, Lichtenstein L, Freeman SS, Pedamallu CS, Imaz-Rosshandler I, Pugh TJ, Cherniack AD, Ambrogio L, Cibulskis K, Bertelsen B, Romero-Cordoba S, Treviño V, Vazquez-Santillan K, Guadarrama AS, Wright AA, Rosenberg MW, Duke F, Kaplan B, Wang R, Nickerson E, Walline HM, Lawrence MS, Stewart C, Carter SL, McKenna A, Rodriguez-Sanchez IP, Espinosa-Castilla M, Woie K, Bjorge L, Wik E, Halle MK, Hoivik EA, Krakstad C, Gabiño NB, Gómez-Macías GS, Valdez-Chapa LD, Garza-Rodríguez ML, Maytorena G, Vazquez J, Rodea C, Cravioto A, Cortes ML, Greulich H, Crum CP, Neuberg DS, Hidalgo-Miranda A, Escareno CR, Akslen LA, Carey TE, Vintermyr OK, Gabriel SB, Barrera-Saldaña HA, Melendez-Zajgla J, Getz G, Salvesen HB, Meyerson M) Nature 2014 Feb 20;506(7488):371-5 PMID: 24390348 PMCID: PMC4161954 SCOPUS ID: 2-s2.0-84894231823 01/07/2014       563 Citations
  • Somatic mutation of CDKN1B in small intestine neuroendocrine tumors. (Francis JM, Kiezun A, Ramos AH, Serra S, Pedamallu CS, Qian ZR, Banck MS, Kanwar R, Kulkarni AA, Karpathakis A, Manzo V, Contractor T, Philips J, Nickerson E, Pho N, Hooshmand SM, Brais LK, Lawrence MS, Pugh T, McKenna A, Sivachenko A, Cibulskis K, Carter SL, Ojesina AI, Freeman S, Jones RT, Voet D, Saksena G, Auclair D, Onofrio R, Shefler E, Sougnez C, Grimsby J, Green L, Lennon N, Meyer T, Caplin M, Chung DC, Beutler AS, Ogino S, Thirlwell C, Shivdasani R, Asa SL, Harris CR, Getz G, Kulke M, Meyerson M) Nat Genet 2013 Dec;45(12):1483-6 PMID: 24185511 PMCID: PMC4239432 SCOPUS ID: 2-s2.0-84888369188 11/05/2013       220 Citations
  • The Cancer Genome Atlas Pan-Cancer analysis project. (Cancer Genome Atlas Research Network, Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM) Nat Genet 2013 Oct;45(10):1113-20 PMID: 24071849 PMCID: PMC3919969 SCOPUS ID: 2-s2.0-84884994218 09/28/2013       3996 Citations
  • Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome. (Bhatt AS, Freeman SS, Herrera AF, Pedamallu CS, Gevers D, Duke F, Jung J, Michaud M, Walker BJ, Young S, Earl AM, Kostic AD, Ojesina AI, Hasserjian R, Ballen KK, Chen YB, Hobbs G, Antin JH, Soiffer RJ, Baden LR, Garrett WS, Hornick JL, Marty FM, Meyerson M) N Engl J Med 2013 Aug 08;369(6):517-28 PMID: 23924002 PMCID: PMC3889161 08/09/2013    
  • Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing. (Lohr JG, Stojanov P, Lawrence MS, Auclair D, Chapuy B, Sougnez C, Cruz-Gordillo P, Knoechel B, Asmann YW, Slager SL, Novak AJ, Dogan A, Ansell SM, Link BK, Zou L, Gould J, Saksena G, Stransky N, Rangel-Escareño C, Fernandez-Lopez JC, Hidalgo-Miranda A, Melendez-Zajgla J, Hernández-Lemus E, Schwarz-Cruz y Celis A, Imaz-Rosshandler I, Ojesina AI, Jung J, Pedamallu CS, Lander ES, Habermann TM, Cerhan JR, Shipp MA, Getz G, Golub TR) Proc Natl Acad Sci U S A 2012 Mar 06;109(10):3879-84 PMID: 22343534 PMCID: PMC3309757 SCOPUS ID: 2-s2.0-84857942952 02/22/2012       752 Citations
  • Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. (Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F, Earl AM, Ojesina AI, Jung J, Bass AJ, Tabernero J, Baselga J, Liu C, Shivdasani RA, Ogino S, Birren BW, Huttenhower C, Garrett WS, Meyerson M) Genome Res 2012 Feb;22(2):292-8 PMID: 22009990 PMCID: PMC3266036 SCOPUS ID: 2-s2.0-84863022950 10/20/2011       1174 Citations
  • PathSeq: software to identify or discover microbes by deep sequencing of human tissue. (Kostic AD, Ojesina AI, Pedamallu CS, Jung J, Verhaak RG, Getz G, Meyerson M) Nat Biotechnol 2011 May;29(5):393-6 PMID: 21552235 PMCID: PMC3523678 SCOPUS ID: 2-s2.0-79955778143 05/10/2011       210 Citations
  • Interplay of reverse transcriptase inhibitor therapy and gag p6 diversity in HIV type 1 subtype G and CRF02_AG. (Ojesina AI, Chaplin B, Sankalé JL, Murphy R, Idigbe E, Adewole I, Ekong E, Idoko J, Kanki PJ) AIDS Res Hum Retroviruses 2008 Sep;24(9):1167-74 PMID: 18729771 PMCID: PMC2928033 SCOPUS ID: 2-s2.0-51849135719 08/30/2008       6 Citations
  • Characterization of HIV type 1 reverse transcriptase mutations in infants infected by mothers who received peripartum nevirapine prophylaxis in Jos, Nigeria. (Ojesina AI, Mullins C, Imade G, Samuels J, Sankalé JL, Pam S, Sagay S, Idoko J, Kanki PJ) AIDS Res Hum Retroviruses 2007 Dec;23(12):1587-92 PMID: 18160018 SCOPUS ID: 2-s2.0-37549068576 12/28/2007       7 Citations
  • The complexity of circulating HIV type 1 strains in Oyo state, Nigeria. (Sankalé JL, Langevin S, Odaibo G, Meloni ST, Ojesina AI, Olaleye D, Kanki P) AIDS Res Hum Retroviruses 2007 Aug;23(8):1020-5 PMID: 17725419 SCOPUS ID: 2-s2.0-34848864225 08/30/2007       25 Citations
  • HIV-1 subtype and reverse transcriptase genotype: role for geographical location and founder effects. (Ojesina AI, Kanki PJ) PLoS Med 2006 Dec;3(12):e540 PMID: 17194205 PMCID: PMC1762043 SCOPUS ID: 2-s2.0-33845884028 12/30/2006       4 Citations
  • Subtype-specific patterns in HIV Type 1 reverse transcriptase and protease in Oyo State, Nigeria: implications for drug resistance and host response. (Ojesina AI, Sankalé JL, Odaibo G, Langevin S, Meloni ST, Sarr AD, Olaleye D, Kanki PJ) AIDS Res Hum Retroviruses 2006 Aug;22(8):770-9 PMID: 16910833 SCOPUS ID: 2-s2.0-33748750913 08/17/2006       32 Citations
  • The role of beta-catenin in regulating angiogenesis in Wilms tumor. (Ojesina AI) J Pediatr Surg 2004 Sep;39(9):1446-7; author reply 1447 PMID: 15359413 SCOPUS ID: 2-s2.0-21644445337 09/11/2004       7 Citations
  • Decline in the frequency of Burkitt's lymphoma relative to other childhood malignancies in Ibadan, Nigeria. (Ojesina AI, Akang EE, Ojemakinde KO) Ann Trop Paediatr 2002 Jun;22(2):159-63 PMID: 12070951 SCOPUS ID: 2-s2.0-0036261885 06/20/2002       29 Citations
  • Last update: 10/18/2022