Medical College of Wisconsin
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G. Thomas Hayman PhD

Research Scientist II

Institution: Medical College of Wisconsin
Department: Physiology
Program: Genetics

Publications (49)

  • 2022 updates to the Rat Genome Database: a Findable, Accessible, Interoperable, and Reusable (FAIR) resource. (Vedi M, Smith JR, Thomas Hayman G, Tutaj M, Brodie KC, De Pons JL, Demos WM, Gibson AC, Kaldunski ML, Lamers L, Laulederkind SJF, Thota J, Thorat K, Tutaj MA, Wang SJ, Zacher S, Dwinell MR, Kwitek AE) Genetics 2023 May 04;224(1) PMID: 36930729 PMCID: PMC10474928 SCOPUS ID: 2-s2.0-85159551813 03/18/2023       1 Citation
  • Ontological Analysis of Coronavirus Associated Human Genes at the COVID-19 Disease Portal. (Wang SJ, Brodie KC, De Pons JL, Demos WM, Gibson AC, Hayman GT, Hill ML, Kaldunski ML, Lamers L, Laulederkind SJF, Nalabolu HS, Thota J, Thorat K, Tutaj MA, Tutaj M, Vedi M, Zacher S, Smith JR, Dwinell MR, Kwitek AE) Genes (Basel) 2022 Dec 07;13(12) PMID: 36553571 PMCID: PMC9777590 SCOPUS ID: 2-s2.0-85144670256 12/24/2022       1 Citation
  • MOET: a web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses. (Vedi M, Nalabolu HS, Lin CW, Hoffman MJ, Smith JR, Brodie K, De Pons JL, Demos WM, Gibson AC, Hayman GT, Hill ML, Kaldunski ML, Lamers L, Laulederkind SJF, Thorat K, Thota J, Tutaj M, Tutaj MA, Wang SJ, Zacher S, Dwinell MR, Kwitek AE) Genetics 2022 Apr 04;220(4) PMID: 35380657 PMCID: PMC8982048 SCOPUS ID: 2-s2.0-85128160560 04/06/2022       6 Citations
  • The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research. (Kaldunski ML, Smith JR, Hayman GT, Brodie K, De Pons JL, Demos WM, Gibson AC, Hill ML, Hoffman MJ, Lamers L, Laulederkind SJF, Nalabolu HS, Thorat K, Thota J, Tutaj M, Tutaj MA, Vedi M, Wang SJ, Zacher S, Dwinell MR, Kwitek AE) Mamm Genome 2022 Mar;33(1):66-80 PMID: 34741192 PMCID: PMC8570235 SCOPUS ID: 2-s2.0-85118526605 11/07/2021       9 Citations
  • NECo: A node embedding algorithm for multiplex heterogeneous networks. (Dursun C, Smith JR, Hayman GT, Kwitek AE, Bozdag S) Proceedings (IEEE Int Conf Bioinformatics Biomed) 2020 Dec;2020:146-149 PMID: 34584774 PMCID: PMC8466723 09/30/2021    
  • The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform. (Smith JR, Hayman GT, Wang SJ, Laulederkind SJF, Hoffman MJ, Kaldunski ML, Tutaj M, Thota J, Nalabolu HS, Ellanki SLR, Tutaj MA, De Pons JL, Kwitek AE, Dwinell MR, Shimoyama ME) Nucleic Acids Res 2020 Jan 08;48(D1):D731-D742 PMID: 31713623 PMCID: PMC7145519 SCOPUS ID: 2-s2.0-85077666371 11/13/2019       87 Citations
  • Rat Genome Databases, Repositories, and Tools. (Laulederkind SJF, Hayman GT, Wang SJ, Hoffman MJ, Smith JR, Bolton ER, De Pons J, Tutaj MA, Tutaj M, Thota J, Dwinell MR, Shimoyama M) Methods Mol Biol 2019;2018:71-96 PMID: 31228152 SCOPUS ID: 2-s2.0-85068143710 06/23/2019       15 Citations
  • Integrated curation and data mining for disease and phenotype models at the Rat Genome Database. (Wang SJ, Laulederkind SJF, Zhao Y, Hayman GT, Smith JR, Tutaj M, Thota J, Tutaj MA, Hoffman MJ, Bolton ER, De Pons J, Dwinell MR, Shimoyama M) Database (Oxford) 2019 Jan 01;2019 PMID: 30753478 PMCID: PMC6369425 SCOPUS ID: 2-s2.0-85061482732 02/13/2019       1 Citation
  • A Primer for the Rat Genome Database (RGD). (Laulederkind SJF, Hayman GT, Wang SJ, Smith JR, Petri V, Hoffman MJ, De Pons J, Tutaj MA, Ghiasvand O, Tutaj M, Thota J, Dwinell MR, Shimoyama M) Methods Mol Biol 2018;1757:163-209 PMID: 29761460 PMCID: PMC6487669 SCOPUS ID: 2-s2.0-85047123695 05/16/2018       10 Citations
  • Exploring human disease using the Rat Genome Database. (Shimoyama M, Laulederkind SJ, De Pons J, Nigam R, Smith JR, Tutaj M, Petri V, Hayman GT, Wang SJ, Ghiasvand O, Thota J, Dwinell MR) Dis Model Mech 2016 Oct 01;9(10):1089-1095 PMID: 27736745 PMCID: PMC5087824 SCOPUS ID: 2-s2.0-84993949779 10/14/2016       26 Citations
  • Disease, Models, Variants and Altered Pathways-Journeying RGD Through the Magnifying Glass. (Petri V, Hayman GT, Tutaj M, Smith JR, Laulederkind S, Wang SJ, Nigam R, De Pons J, Shimoyama M, Dwinell MR) Comput Struct Biotechnol J 2016;14:35-48 PMID: 27602200 PMCID: PMC4700298 SCOPUS ID: 2-s2.0-84961710673 09/08/2016       2 Citations
  • Comprehensive coverage of cardiovascular disease data in the disease portals at the Rat Genome Database. (Wang SJ, Laulederkind SJ, Hayman GT, Petri V, Smith JR, Tutaj M, Nigam R, Dwinell MR, Shimoyama M) Physiol Genomics 2016 Aug 01;48(8):589-600 PMID: 27287925 PMCID: PMC5005459 SCOPUS ID: 2-s2.0-84983740999 06/12/2016       3 Citations
  • The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database. (Hayman GT, Laulederkind SJ, Smith JR, Wang SJ, Petri V, Nigam R, Tutaj M, De Pons J, Dwinell MR, Shimoyama M) Database (Oxford) 2016;2016 PMID: 27009807 PMCID: PMC4805243 SCOPUS ID: 2-s2.0-84964901900 03/25/2016       17 Citations
  • PhenoMiner: a quantitative phenotype database for the laboratory rat, Rattus norvegicus. Application in hypertension and renal disease. (Wang SJ, Laulederkind SJ, Hayman GT, Petri V, Liu W, Smith JR, Nigam R, Dwinell MR, Shimoyama M) Database (Oxford) 2015;2015 PMID: 25632109 PMCID: PMC4309021 SCOPUS ID: 2-s2.0-84943179091 01/30/2015       11 Citations
  • OntoMate: a text-mining tool aiding curation at the Rat Genome Database. (Liu W, Laulederkind SJ, Hayman GT, Wang SJ, Nigam R, Smith JR, De Pons J, Dwinell MR, Shimoyama M) Database (Oxford) 2015;2015 PMID: 25619558 PMCID: PMC4305386 SCOPUS ID: 2-s2.0-85051605173 01/27/2015       19 Citations
  • The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease. (Shimoyama M, De Pons J, Hayman GT, Laulederkind SJ, Liu W, Nigam R, Petri V, Smith JR, Tutaj M, Wang SJ, Worthey E, Dwinell M, Jacob H) Nucleic Acids Res 2015 Jan;43(Database issue):D743-50 PMID: 25355511 PMCID: PMC4383884 SCOPUS ID: 2-s2.0-84941092929 10/31/2014       169 Citations
  • Disease pathways at the Rat Genome Database Pathway Portal: genes in context-a network approach to understanding the molecular mechanisms of disease. (Petri V, Hayman GT, Tutaj M, Smith JR, Laulederkind SJ, Wang SJ, Nigam R, De Pons J, Shimoyama M, Dwinell MR, Worthey EA, Jacob HJ) Hum Genomics 2014 Sep 30;8(1):17 PMID: 25265995 PMCID: PMC4191248 SCOPUS ID: 2-s2.0-84964312855 10/01/2014       7 Citations
  • Overview of the gene ontology task at BioCreative IV. (Mao Y, Van Auken K, Li D, Arighi CN, McQuilton P, Hayman GT, Tweedie S, Schaeffer ML, Laulederkind SJ, Wang SJ, Gobeill J, Ruch P, Luu AT, Kim JJ, Chiang JH, Chen YD, Yang CJ, Liu H, Zhu D, Li Y, Yu H, Emadzadeh E, Gonzalez G, Chen JM, Dai HJ, Lu Z) Database (Oxford) 2014;2014 PMID: 25157073 PMCID: PMC4142793 SCOPUS ID: 2-s2.0-84996554576 08/27/2014       37 Citations
  • BC4GO: a full-text corpus for the BioCreative IV GO task. (Van Auken K, Schaeffer ML, McQuilton P, Laulederkind SJ, Li D, Wang SJ, Hayman GT, Tweedie S, Arighi CN, Done J, Müller HM, Sternberg PW, Mao Y, Wei CH, Lu Z) Database (Oxford) 2014;2014 PMID: 25070993 PMCID: PMC4112614 SCOPUS ID: 2-s2.0-84943157830 07/30/2014       27 Citations
  • The pathway ontology - updates and applications. (Petri V, Jayaraman P, Tutaj M, Hayman GT, Smith JR, De Pons J, Laulederkind SJ, Lowry TF, Nigam R, Wang SJ, Shimoyama M, Dwinell MR, Munzenmaier DH, Worthey EA, Jacob HJ) J Biomed Semantics 2014 Feb 05;5(1):7 PMID: 24499703 PMCID: PMC3922094 SCOPUS ID: 2-s2.0-84927942575 02/07/2014       64 Citations
  • The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications. (Smith JR, Park CA, Nigam R, Laulederkind SJ, Hayman GT, Wang SJ, Lowry TF, Petri V, Pons JD, Tutaj M, Liu W, Worthey EA, Shimoyama M, Dwinell MR) J Biomed Semantics 2013 Oct 08;4(1):26 PMID: 24103152 PMCID: PMC3882879 SCOPUS ID: 2-s2.0-84978081999 10/10/2013       27 Citations
  • Rat Genome Database: a unique resource for rat, human, and mouse quantitative trait locus data. (Nigam R, Laulederkind SJ, Hayman GT, Smith JR, Wang SJ, Lowry TF, Petri V, De Pons J, Tutaj M, Liu W, Jayaraman P, Munzenmaier DH, Worthey EA, Dwinell MR, Shimoyama M, Jacob HJ) Physiol Genomics 2013 Sep 16;45(18):809-16 PMID: 23881287 PMCID: PMC3783816 SCOPUS ID: 2-s2.0-84884191657 07/25/2013       22 Citations
  • Analysis of disease-associated objects at the Rat Genome Database. (Wang SJ, Laulederkind SJ, Hayman GT, Smith JR, Petri V, Lowry TF, Nigam R, Dwinell MR, Worthey EA, Munzenmaier DH, Shimoyama M, Jacob HJ) Database (Oxford) 2013;2013:bat046 PMID: 23794737 PMCID: PMC3689439 SCOPUS ID: 2-s2.0-84885941569 06/26/2013       7 Citations
  • PhenoMiner: quantitative phenotype curation at the rat genome database. (Laulederkind SJ, Liu W, Smith JR, Hayman GT, Wang SJ, Nigam R, Petri V, Lowry TF, de Pons J, Dwinell MR, Shimoyama M) Database (Oxford) 2013;2013:bat015 PMID: 23603846 PMCID: PMC3630803 SCOPUS ID: 2-s2.0-84885154580 04/23/2013       22 Citations
  • The Rat Genome Database 2013--data, tools and users. (Laulederkind SJ, Hayman GT, Wang SJ, Smith JR, Lowry TF, Nigam R, Petri V, de Pons J, Dwinell MR, Shimoyama M, Munzenmaier DH, Worthey EA, Jacob HJ) Brief Bioinform 2013 Jul;14(4):520-6 PMID: 23434633 PMCID: PMC3713714 SCOPUS ID: 2-s2.0-84888772878 02/26/2013       56 Citations
  • The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information. (Hayman GT, Jayaraman P, Petri V, Tutaj M, Liu W, De Pons J, Dwinell MR, Shimoyama M) Hum Genomics 2013 Feb 05;7(1):4 PMID: 23379628 PMCID: PMC3598722 SCOPUS ID: 2-s2.0-84878767208 02/06/2013       7 Citations
  • Exploring genetic, genomic, and phenotypic data at the rat genome database. (Laulederkind SJF, Hayman GT, Wang SJ, Lowry TF, Nigam R, Petri V, Smith JR, Dwinell MR, Jacob HJ, Shimoyama M) Curr Protoc Bioinformatics 2012 Dec;Chapter 1:1.14.1-1.14.27 PMID: 23255149 PMCID: PMC3555435 SCOPUS ID: 2-s2.0-84875531338 12/21/2012       10 Citations
  • Model organism databases in behavioral neuroscience. (Shimoyama M, Smith JR, Hayman GT, Petri V, Nigam R) Int Rev Neurobiol 2012;104:25-46 PMID: 23195310 SCOPUS ID: 2-s2.0-84870282747 12/01/2012    
  • Ontology searching and browsing at the Rat Genome Database. (Laulederkind SJ, Tutaj M, Shimoyama M, Hayman GT, Lowry TF, Nigam R, Petri V, Smith JR, Wang SJ, de Pons J, Dwinell MR, Jacob HJ) Database (Oxford) 2012;2012:bas016 PMID: 22434847 PMCID: PMC3308169 SCOPUS ID: 2-s2.0-84862262998 03/22/2012       18 Citations
  • The Rat Genome Database pathway portal. (Petri V, Shimoyama M, Hayman GT, Smith JR, Tutaj M, de Pons J, Dwinell MR, Munzenmaier DH, Twigger SN, Jacob HJ, RGD Team) Database (Oxford) 2011;2011:bar010 PMID: 21478484 PMCID: PMC3072770 SCOPUS ID: 2-s2.0-80052334281 04/12/2011       18 Citations
  • The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data. (Laulederkind SJ, Shimoyama M, Hayman GT, Lowry TF, Nigam R, Petri V, Smith JR, Wang SJ, de Pons J, Kowalski G, Liu W, Rood W, Munzenmaier DH, Dwinell MR, Twigger SN, Jacob HJ, RGD Team) Database (Oxford) 2011;2011:bar002 PMID: 21321022 PMCID: PMC3041158 SCOPUS ID: 2-s2.0-79956225148 02/16/2011       12 Citations
  • The rat genome database curators: who, what, where, why. (Shimoyama M, Hayman GT, Laulederkind SJ, Nigam R, Lowry TF, Petri V, Smith JR, Wang SJ, Munzenmaier DH, Dwinell MR, Twigger SN, Jacob HJ, RGD Team) PLoS Comput Biol 2009 Nov;5(11):e1000582 PMID: 19956751 PMCID: PMC2775909 SCOPUS ID: 2-s2.0-73449141822 12/04/2009       18 Citations
  • Comparison of the TCR zeta-chain with the FcR gamma-chain in chimeric TCR constructs for T cell activation and apoptosis. (Ren-Heidenreich L, Mordini R, Hayman GT, Siebenlist R, LeFever A) Cancer Immunol Immunother 2002 Oct;51(8):417-23 PMID: 12202902 SCOPUS ID: 2-s2.0-0036047663 08/31/2002       30 Citations
  • Specific targeting of EGP-2+ tumor cells by primary lymphocytes modified with chimeric T cell receptors. (Ren-Heidenreich L, Hayman GT, Trevor KT) Hum Gene Ther 2000 Jan 01;11(1):9-19 PMID: 10646635 SCOPUS ID: 2-s2.0-0033982163 01/26/2000       36 Citations
  • Tissue factor activity is increased in human endothelial cells cultured under elevated static pressure. (Silverman MD, Waters CR, Hayman GT, Wigboldus J, Samet MM, Lelkes PI) Am J Physiol 1999 Aug;277(2):C233-42 PMID: 10444399 SCOPUS ID: 2-s2.0-0032883953 08/13/1999       18 Citations
  • Tissue-specific alternative mRNA splicing of phenylethanolamine N-methyltransferase (PNMT) during development by intron retention. (Unsworth BR, Hayman GT, Carroll A, Lelkes PI) Int J Dev Neurosci 1999 Feb;17(1):45-55 PMID: 10219960 SCOPUS ID: 2-s2.0-0032976852 04/29/1999       29 Citations
  • Comparison of ICAM-1 and VCAM-1 expression in various human endothelial cell types and smooth muscle cells. (Kanda K, Hayman GT, Silverman MD, Lelkes PI) Endothelium 1998;6(1):33-44 PMID: 9832331 SCOPUS ID: 2-s2.0-0031753339 12/01/1998       30 Citations
  • Simulated microgravity conditions enhance differentiation of cultured PC12 cells towards the neuroendocrine phenotype. (Lelkes PI, Galvan DL, Hayman GT, Goodwin TJ, Chatman DY, Cherian S, Garcia RM, Unsworth BR) In Vitro Cell Dev Biol Anim 1998 Apr;34(4):316-25 PMID: 9590505 SCOPUS ID: 2-s2.0-0032441307 05/20/1998       68 Citations
  • Thrombin modulates vectorial secretion of extracellular matrix proteins in cultured endothelial cells. (Papadimitriou E, Manolopoulos VG, Hayman GT, Maragoudakis ME, Unsworth BR, Fenton JW 2nd, Lelkes PI) Am J Physiol 1997 Apr;272(4 Pt 1):C1112-22 PMID: 9142835 SCOPUS ID: 2-s2.0-0030948874 04/11/1997       39 Citations
  • Sequence and analysis of an aldose (xylose) reductase gene from the xylose-fermenting yeast Pachysolen tannophilus. (Bolen PL, Hayman GT, Shepherd HS) Yeast 1996 Oct;12(13):1367-75 PMID: 8923742 SCOPUS ID: 2-s2.0-0029853042 10/01/1996       20 Citations
  • AtJ2, an arabidopsis homolog of Escherichia coli dnaJ. (Zhou R, Kroczynska B, Hayman GT, Miernyk JA) Plant Physiol 1995 Jun;108(2):821-2 PMID: 7610169 PMCID: PMC157405 SCOPUS ID: 2-s2.0-0029317749 06/01/1995       19 Citations
  • The nucleotide and deduced amino acid sequences of a peptidyl-prolyl cis-trans isomerase from Arabidopsis thaliana. (Hayman GT, Miernyk JA) Biochim Biophys Acta 1994 Oct 18;1219(2):536-8 PMID: 7918654 SCOPUS ID: 2-s2.0-0027996970 10/18/1994       16 Citations
  • Isolation and sequence analysis of a gene from the linear DNA plasmid pPacl-2 of Pichia acaciae that shows similarity to a killer toxin gene of Kluyveromyces lactis. (Bolen PL, Eastman EM, Cihak PL, Hayman GT) Yeast 1994 Mar;10(3):403-14 PMID: 8017110 SCOPUS ID: 2-s2.0-0028274780 03/01/1994       22 Citations
  • Movement of shuttle plasmids from Escherichia coli into yeasts other than Saccharomyces cerevisiae using trans-kingdom conjugation. (Hayman GT, Bolen PL) Plasmid 1993 Nov;30(3):251-7 PMID: 8302932 SCOPUS ID: 2-s2.0-0027482634 11/01/1993       27 Citations
  • Genetic analysis of the agrocinopine catabolic region of Agrobacterium tumefaciens Ti plasmid pTiC58, which encodes genes required for opine and agrocin 84 transport. (Hayman GT, Beck von Bodman S, Kim H, Jiang P, Farrand SK) J Bacteriol 1993 Sep;175(17):5575-84 PMID: 8366042 PMCID: PMC206614 SCOPUS ID: 2-s2.0-0027163480 09/01/1993       32 Citations
  • Opine catabolism and conjugal transfer of the nopaline Ti plasmid pTiC58 are coordinately regulated by a single repressor. (Beck von Bodman S, Hayman GT, Farrand SK) Proc Natl Acad Sci U S A 1992 Jan 15;89(2):643-7 PMID: 1731335 PMCID: PMC48295 SCOPUS ID: 2-s2.0-0026515403 01/15/1992       127 Citations
  • Linear DNA plasmids of Pichia inositovora are associated with a novel killer toxin activity. (Hayman GT, Bolen PL) Curr Genet 1991 May;19(5):389-93 PMID: 1913878 SCOPUS ID: 2-s2.0-0025727606 05/01/1991       33 Citations
  • Agrobacterium plasmids encode structurally and functionally different loci for catabolism of agrocinopine-type opines. (Hayman GT, Farrand SK) Mol Gen Genet 1990 Sep;223(3):465-73 PMID: 2270086 SCOPUS ID: 2-s2.0-0025085829 09/01/1990       32 Citations
  • Characterization and mapping of the agrocinopine-agrocin 84 locus on the nopaline Ti plasmid pTiC58. (Hayman GT, Farrand SK) J Bacteriol 1988 Apr;170(4):1759-67 PMID: 2832379 PMCID: PMC211028 SCOPUS ID: 2-s2.0-0023991790 04/01/1988       54 Citations
    • Last update: 03/20/2023