Faculty Collaboration Database

The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information. Hum Genomics 2013 Feb 05;7(1):4

Date

02/06/2013

Pubmed ID

23379628

Pubmed Central ID

PMC3598722

DOI

10.1186/1479-7364-7-4

Scopus ID

2-s2.0-84878767208 (requires institutional sign-in at Scopus site)   7 Citations

Abstract

The RGD Pathway Portal provides pathway annotations for rat, human and mouse genes and pathway diagrams and suites, all interconnected via the pathway ontology. Diagram pages present the diagram and description, with diagram objects linked to additional resources. A newly-developed dual-functionality web application composes the diagram page. Curators input the description, diagram, references and additional pathway objects. The application combines these with tables of rat, human and mouse pathway genes, including genetic information, analysis tool and reference links, and disease, phenotype and other pathway annotations to pathway genes. The application increases the information content of diagram pages while expediting publication.

Author List

Hayman GT, Jayaraman P, Petri V, Tutaj M, Liu W, De Pons J, Dwinell MR, Shimoyama M

Authors

Melinda R. Dwinell PhD Professor in the Physiology department at Medical College of Wisconsin
G. Thomas Hayman PhD Research Scientist II in the Physiology department at Medical College of Wisconsin

MESH terms used to index this publication - Major topics in bold

Animals
Computational Biology
Databases, Genetic
Gene Regulatory Networks
Genome, Human
Humans
Internet
Metabolic Networks and Pathways
Mice
Molecular Sequence Annotation
Quantitative Trait Loci
Rats
Reproducibility of Results
Search Engine
Signal Transduction
Software