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Publications indexed to the term Sequence Alignment

FacultyTitle
1Mechanisms of SARS-CoV-2 neutralization by shark variable new antigen receptors elucidated through X-ray crystallography. (Ubah OC, Lake EW, Gunaratne GS, Gallant JP, Fernie M, Robertson AJ, Marchant JS, Bold TD, Langlois RA, Matchett WE, Thiede JM, Shi K, Yin L, Moeller NH, Banerjee S, Ferguson L, Kovaleva M, Porter AJ, Aihara H, LeBeau AM, Barelle CJ) Nat Commun 2021 Dec 16;12(1):7325       26 Citations
1A structurally conserved human and Tetrahymena telomerase catalytic core. (Wang Y, Gallagher-Jones M, Sušac L, Song H, Feigon J) Proc Natl Acad Sci U S A 2020 Dec 08;117(49):31078-31087       22 Citations
1Tumor-intrinsic and -extrinsic determinants of response to blinatumomab in adults with B-ALL. (Zhao Y, Aldoss I, Qu C, Crawford JC, Gu Z, Allen EK, Zamora AE, Alexander TB, Wang J, Goto H, Imamura T, Akahane K, Marcucci G, Stein AS, Bhatia R, Thomas PG, Forman SJ, Mullighan CG, Roberts KG) Blood 2021 Jan 28;137(4):471-484       100 Citations
2Covalent-Fragment Screening of BRD4 Identifies a Ligandable Site Orthogonal to the Acetyl-Lysine Binding Sites. (Olp MD, Sprague DJ, Goetz CJ, Kathman SG, Wynia-Smith SL, Shishodia S, Summers SB, Xu Z, Statsyuk AV, Smith BC) ACS Chem Biol 2020 Apr 17;15(4):1036-1049       39 Citations
1Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes. (Talwar C, Nagar S, Kumar R, Scaria J, Lal R, Negi RK) Sci Rep 2020 Jan 24;10(1):1151       70 Citations
1Antiviral activity of a purine synthesis enzyme reveals a key role of deamidation in regulating protein nuclear import. (Li J, Zhao J, Xu S, Zhang S, Zhang J, Xiao J, Gao R, Tian M, Zeng Y, Lee K, Tarakanova V, Lan K, Feng H, Feng P) Sci Adv 2019 Oct;5(10):eaaw7373       18 Citations
3Modeling post-translational modifications and cancer-associated mutations that impact the heterochromatin protein 1α-importin α heterodimers. (Zimmermann MT, Williams MM, Klee EW, Lomberk GA, Urrutia R) Proteins 2019 Nov;87(11):904-916       4 Citations
1Analyzing the function of the insert region found between the α and β-subunits in the eukaryotic nitrile hydratase from Monosiga brevicollis. (Yang X, Bennett B, Holz RC) Arch Biochem Biophys 2018 Nov 01;657:1-7       3 Citations
1Glyceraldehyde-3-phosphate dehydrogenase is a chaperone that allocates labile heme in cells. (Sweeny EA, Singh AB, Chakravarti R, Martinez-Guzman O, Saini A, Haque MM, Garee G, Dans PD, Hannibal L, Reddi AR, Stuehr DJ) J Biol Chem 2018 Sep 14;293(37):14557-14568       91 Citations
1Unique pharmacological properties of serotoninergic G-protein coupled receptors from cestodes. (Camicia F, Celentano AM, Johns ME, Chan JD, Maldonado L, Vaca H, Di Siervi N, Kamentezky L, Gamo AM, Ortega-Gutierrez S, Martin-Fontecha M, Davio C, Marchant JS, Rosenzvit MC) PLoS Negl Trop Dis 2018 Feb;12(2):e0006267       24 Citations
1Human P450 CYP17A1: Control of Substrate Preference by Asparagine 202. (Gregory MC, Mak PJ, Khatri Y, Kincaid JR, Sligar SG) Biochemistry 2018 Feb 06;57(5):764-771       9 Citations
1Novel autosomal dominant TNNT1 mutation causing nemaline myopathy. (Konersman CG, Freyermuth F, Winder TL, Lawlor MW, Lagier-Tourenne C, Patel SB) Mol Genet Genomic Med 2017 Nov;5(6):678-691       26 Citations
1Kindlin supports platelet integrin αIIbβ3 activation by interacting with paxillin. (Gao J, Huang M, Lai J, Mao K, Sun P, Cao Z, Hu Y, Zhang Y, Schulte ML, Jin C, Wang J, White GC, Xu Z, Ma YQ) J Cell Sci 2017 Nov 01;130(21):3764-3775       52 Citations
1Functional characterization of zebrafish orthologs of the human Beta 3-Glucosyltransferase B3GLCT gene mutated in Peters Plus Syndrome. (Weh E, Takeuchi H, Muheisen S, Haltiwanger RS, Semina EV) PLoS One 2017;12(9):e0184903       14 Citations
2Identity and function of a cardiac mitochondrial small conductance Ca2+-activated K+ channel splice variant. (Yang M, Camara AKS, Aldakkak M, Kwok WM, Stowe DF) Biochim Biophys Acta Bioenerg 2017 Jun;1858(6):442-458       30 Citations
1A novel ANO3 variant identified in a 53-year-old woman presenting with hyperkinetic dysarthria, blepharospasm, hyperkinesias, and complex motor tics. (Blackburn PR, Zimmermann MT, Gass JM, Harris KG, Cousin MA, Boczek NJ, Ross OA, Klee EW, Brazis PW, Van Gerpen JA, Atwal PS) BMC Med Genet 2016 Dec 05;17(1):93       12 Citations
1The iron-type nitrile hydratase activator protein is a GTPase. (Gumataotao N, Lankathilaka KP, Bennett B, Holz RC) Biochem J 2017 Jan 15;474(2):247-258       20 Citations
1Differences in the Phosphorylation-Dependent Regulation of Prenylation of Rap1A and Rap1B. (Wilson JM, Prokop JW, Lorimer E, Ntantie E, Williams CL) J Mol Biol 2016 Dec 04;428(24 Pt B):4929-4945       25 Citations
1Analysis of Plasminogen Genetic Variants in Multiple Sclerosis Patients. (Sadovnick AD, Traboulsee AL, Bernales CQ, Ross JP, Forwell AL, Yee IM, Guillot-Noel L, Fontaine B, Cournu-Rebeix I, Alcina A, Fedetz M, Izquierdo G, Matesanz F, Hilven K, Dubois B, Goris A, Astobiza I, Alloza I, Antigüedad A, Vandenbroeck K, Akkad DA, Aktas O, Blaschke P, Buttmann M, Chan A, Epplen JT, Gerdes LA, Kroner A, Kubisch C, Kümpfel T, Lohse P, Rieckmann P, Zettl UK, Zipp F, Bertram L, Lill CM, Fernandez O, Urbaneja P, Leyva L, Alvarez-Cermeño JC, Arroyo R, Garagorri AM, García-Martínez A, Villar LM, Urcelay E, Malhotra S, Montalban X, Comabella M, Berger T, Fazekas F, Reindl M, Schmied MC, Zimprich A, Vilariño-Güell C) G3 (Bethesda) 2016 Jul 07;6(7):2073-9       14 Citations
1Linker regions and flexibility around the metalloprotease domain account for conformational activation of ADAMTS-13. (Deforche L, Roose E, Vandenbulcke A, Vandeputte N, Feys HB, Springer TA, Mi LZ, Muia J, Sadler JE, Soejima K, Rottensteiner H, Deckmyn H, De Meyer SF, Vanhoorelbeke K) J Thromb Haemost 2015 Nov;13(11):2063-75       64 Citations
1Structural basis for quinine-dependent antibody binding to platelet integrin αIIbβ3. (Zhu J, Zhu J, Bougie DW, Aster RH, Springer TA) Blood 2015 Oct 29;126(18):2138-45       26 Citations
1Single Amino Acid Variation Underlies Species-Specific Sensitivity to Amphibian Skin-Derived Opioid-like Peptides. (Vardy E, Sassano MF, Rennekamp AJ, Kroeze WK, Mosier PD, Westkaemper RB, Stevens CW, Katritch V, Stevens RC, Peterson RT, Roth BL) Chem Biol 2015 Jun 18;22(6):764-75       12 Citations
4Crystal Structure and Functional Analyses of the Lectin Domain of Glucosidase II: Insights into Oligomannose Recognition. (Olson LJ, Orsi R, Peterson FC, Parodi AJ, Kim JJ, D'Alessio C, Dahms NM) Biochemistry 2015 Jul 07;54(26):4097-111       14 Citations
1Structure of the Angiotensin receptor revealed by serial femtosecond crystallography. (Zhang H, Unal H, Gati C, Han GW, Liu W, Zatsepin NA, James D, Wang D, Nelson G, Weierstall U, Sawaya MR, Xu Q, Messerschmidt M, Williams GJ, Boutet S, Yefanov OM, White TA, Wang C, Ishchenko A, Tirupula KC, Desnoyer R, Coe J, Conrad CE, Fromme P, Stevens RC, Katritch V, Karnik SS, Cherezov V) Cell 2015 May 07;161(4):833-44       319 Citations
2Efficient CRISPR/Cas9-Mediated Genome Editing in Mice by Zygote Electroporation of Nuclease. (Qin W, Dion SL, Kutny PM, Zhang Y, Cheng AW, Jillette NL, Malhotra A, Geurts AM, Chen YG, Wang H) Genetics 2015 Jun;200(2):423-30       226 Citations
1Novel alleles of the transforming growth factor β-1 regulatory region and exon 1. (Arrieta-Bolaños E, Madrigal JA, Shaw BE) Tissue Antigens 2015 Jun;85(6):484-91       3 Citations
1Transcriptional reversion of cardiac myocyte fate during mammalian cardiac regeneration. (O'Meara CC, Wamstad JA, Gladstone RA, Fomovsky GM, Butty VL, Shrikumar A, Gannon JB, Boyer LA, Lee RT) Circ Res 2015 Feb 27;116(5):804-15       133 Citations
1Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways. (Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R) BMC Genomics 2014 Nov 23;15(1):1014       65 Citations
1The solution structure of the forkhead box-O DNA binding domain of Brugia malayi DAF-16a. (Casper SK, Schoeller SJ, Zgoba DM, Phillips AJ, Morien TJ, Chaffee GR, Sackett PC, Peterson FC, Crossgrove K, Veldkamp CT) Proteins 2014 Dec;82(12):3490-6       4 Citations
1TNNI3K mutation in familial syndrome of conduction system disease, atrial tachyarrhythmia and dilated cardiomyopathy. (Theis JL, Zimmermann MT, Larsen BT, Rybakova IN, Long PA, Evans JM, Middha S, de Andrade M, Moss RL, Wieben ED, Michels VV, Olson TM) Hum Mol Genet 2014 Nov 01;23(21):5793-804       47 Citations
2Loss-of-function mutations in TBC1D20 cause cataracts and male infertility in blind sterile mice and Warburg micro syndrome in humans. (Liegel RP, Handley MT, Ronchetti A, Brown S, Langemeyer L, Linford A, Chang B, Morris-Rosendahl DJ, Carpanini S, Posmyk R, Harthill V, Sheridan E, Abdel-Salam GM, Terhal PA, Faravelli F, Accorsi P, Giordano L, Pinelli L, Hartmann B, Ebert AD, Barr FA, Aligianis IA, Sidjanin DJ) Am J Hum Genet 2013 Dec 05;93(6):1001-14       109 Citations
1Skin-derived cues control arborization of sensory dendrites in Caenorhabditis elegans. (Salzberg Y, Díaz-Balzac CA, Ramirez-Suarez NJ, Attreed M, Tecle E, Desbois M, Kaprielian Z, Bülow HE) Cell 2013 Oct 10;155(2):308-20       124 Citations
2Mmp17b is essential for proper neural crest cell migration in vivo. (Leigh NR, Schupp MO, Li K, Padmanabhan V, Gastonguay A, Wang L, Chun CZ, Wilkinson GA, Ramchandran R) PLoS One 2013;8(10):e76484       37 Citations
1Binding mode characterization of 6α- and 6β-N-heterocyclic substituted naltrexamine derivatives via docking in opioid receptor crystal structures and site-directed mutagenesis studies: application of the 'message-address' concept in development of mu opioid receptor selective antagonists. (Zaidi SA, Arnatt CK, He H, Selley DE, Mosier PD, Kellogg GE, Zhang Y) Bioorg Med Chem 2013 Nov 01;21(21):6405-13       25 Citations
1Telomere phenotypes in females with heterozygous mutations in the dyskeratosis congenita 1 (DKC1) gene. (Alder JK, Parry EM, Yegnasubramanian S, Wagner CL, Lieblich LM, Auerbach R, Auerbach AD, Wheelan SJ, Armanios M) Hum Mutat 2013 Nov;34(11):1481-5       87 Citations
1Structural basis for the interaction of unstructured neuron specific substrates neuromodulin and neurogranin with Calmodulin. (Kumar V, Chichili VP, Zhong L, Tang X, Velazquez-Campoy A, Sheu FS, Seetharaman J, Gerges NZ, Sivaraman J) Sci Rep 2013;3:1392       56 Citations
1Diverged alleles of the Anopheles gambiae leucine-rich repeat gene APL1A display distinct protective profiles against Plasmodium falciparum. (Holm I, Lavazec C, Garnier T, Mitri C, Riehle MM, Bischoff E, Brito-Fravallo E, Takashima E, Thiery I, Zettor A, Petres S, Bourgouin C, Vernick KD, Eiglmeier K) PLoS One 2012;7(12):e52684       11 Citations
1Human red blood cells at work: identification and visualization of erythrocytic eNOS activity in health and disease. (Cortese-Krott MM, Rodriguez-Mateos A, Sansone R, Kuhnle GG, Thasian-Sivarajah S, Krenz T, Horn P, Krisp C, Wolters D, Heiß C, Kröncke KD, Hogg N, Feelisch M, Kelm M) Blood 2012 Nov 15;120(20):4229-37       153 Citations
1The DPY-30 domain and its flanking sequence mediate the assembly and modulation of flagellar radial spoke complexes. (Gopal R, Foster KW, Yang P) Mol Cell Biol 2012 Oct;32(19):4012-24       17 Citations
2E2-binding surface on Uba3 β-grasp domain undergoes a conformational transition. (Elgin ES, Sökmen N, Peterson FC, Volkman BF, Dağ C, Haas AL) Proteins 2012 Oct;80(10):2482-7       3 Citations
1Vaccines against botulism. (Karalewitz AP, Barbieri JT) Curr Opin Microbiol 2012 Jun;15(3):317-24       35 Citations
1Opposing roles of voltage-gated Ca2+ channels in neuronal control of regenerative patterning. (Zhang D, Chan JD, Nogi T, Marchant JS) J Neurosci 2011 Nov 02;31(44):15983-95       42 Citations
1VSX2 mutations in autosomal recessive microphthalmia. (Reis LM, Khan A, Kariminejad A, Ebadi F, Tyler RC, Semina EV) Mol Vis 2011;17:2527-32       31 Citations
2Sulfotyrosine recognition as marker for druggable sites in the extracellular space. (Ziarek JJ, Heroux MS, Veldkamp CT, Peterson FC, Volkman BF) Int J Mol Sci 2011;12(6):3740-56       16 Citations
2Mannose 6-phosphate receptor homology (MRH) domain-containing lectins in the secretory pathway. (Castonguay AC, Olson LJ, Dahms NM) Biochim Biophys Acta 2011 Sep;1810(9):815-26       30 Citations
1UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids. (Wenzel DM, Lissounov A, Brzovic PS, Klevit RE) Nature 2011 Jun 02;474(7349):105-8       452 Citations
1Dynamic interchanging native states of lymphotactin examined by SNAPP-MS. (Sun Q, Tyler RC, Volkman BF, Julian RR) J Am Soc Mass Spectrom 2011 Mar;22(3):399-407       7 Citations
6Making a definitive diagnosis: successful clinical application of whole exome sequencing in a child with intractable inflammatory bowel disease. (Worthey EA, Mayer AN, Syverson GD, Helbling D, Bonacci BB, Decker B, Serpe JM, Dasu T, Tschannen MR, Veith RL, Basehore MJ, Broeckel U, Tomita-Mitchell A, Arca MJ, Casper JT, Margolis DA, Bick DP, Hessner MJ, Routes JM, Verbsky JW, Jacob HJ, Dimmock DP) Genet Med 2011 Mar;13(3):255-62       609 Citations
1A novel HLA-DPB1 allele, DPB1*125:01, identified by sequence-based typing in an Indian individual. (Kanga U, McWhinnie AJ, Mourya M, Shaw BE, Madrigal JA, Mehra NK) Tissue Antigens 2011 Jan;77(1):85-7       4 Citations
1Structural evidence for loose linkage between ligand binding and kinase activation in the epidermal growth factor receptor. (Lu C, Mi LZ, Grey MJ, Zhu J, Graef E, Yokoyama S, Springer TA) Mol Cell Biol 2010 Nov;30(22):5432-43       177 Citations
1Identification of dominant FOXE3 and PAX6 mutations in patients with congenital cataract and aniridia. (Brémond-Gignac D, Bitoun P, Reis LM, Copin H, Murray JC, Semina EV) Mol Vis 2010 Aug 22;16:1705-11       47 Citations
1Cabin1 expression suggests roles in neuronal development. (Hammond DR, Udvadia AJ) Dev Dyn 2010 Sep;239(9):2443-51       20 Citations
1An epilepsy/dyskinesia-associated mutation enhances BK channel activation by potentiating Ca2+ sensing. (Yang J, Krishnamoorthy G, Saxena A, Zhang G, Shi J, Yang H, Delaloye K, Sept D, Cui J) Neuron 2010 Jun 24;66(6):871-83       98 Citations
1An oleate-stimulated, phosphatidylinositol 4,5-bisphosphate-independent phospholipase D in Schizosaccharomyces pombe. (Harkins AL, Yuan G, London SD, Dolan JW) FEMS Yeast Res 2010 Sep;10(6):717-26       7 Citations
1Multiple binding modes between HNF4alpha and the LXXLL motifs of PGC-1alpha lead to full activation. (Rha GB, Wu G, Shoelson SE, Chi YI) J Biol Chem 2009 Dec 11;284(50):35165-76       29 Citations
1Synthesis, structure-affinity relationships, and modeling of AMDA analogs at 5-HT2A and H1 receptors: structural factors contributing to selectivity. (Shah JR, Mosier PD, Roth BL, Kellogg GE, Westkaemper RB) Bioorg Med Chem 2009 Sep 15;17(18):6496-504       21 Citations
1Essential requirement for two-pore channel 1 in NAADP-mediated calcium signaling. (Brailoiu E, Churamani D, Cai X, Schrlau MG, Brailoiu GC, Gao X, Hooper R, Boulware MJ, Dun NJ, Marchant JS, Patel S) J Cell Biol 2009 Jul 27;186(2):201-9       352 Citations
1Archaeal aIF2B interacts with eukaryotic translation initiation factors eIF2alpha and eIF2Balpha: Implications for aIF2B function and eIF2B regulation. (Dev K, Santangelo TJ, Rothenburg S, Neculai D, Dey M, Sicheri F, Dever TE, Reeve JN, Hinnebusch AG) J Mol Biol 2009 Sep 25;392(3):701-22       27 Citations
1Engineering botulinum neurotoxin to extend therapeutic intervention. (Chen S, Barbieri JT) Proc Natl Acad Sci U S A 2009 Jun 09;106(23):9180-4       71 Citations
2Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds. (Lytle BL, Song J, de la Cruz NB, Peterson FC, Johnson KA, Bingman CA, Phillips GN Jr, Volkman BF) Proteins 2009 Jul;76(1):237-43       72 Citations
1Analyzing the catalytic role of Asp97 in the methionine aminopeptidase from Escherichia coli. (Mitra S, Job KM, Meng L, Bennett B, Holz RC) FEBS J 2008 Dec;275(24):6248-59       8 Citations
1Potential modes of interaction of 9-aminomethyl-9,10-dihydroanthracene (AMDA) derivatives with the 5-HT2A receptor: a ligand structure-affinity relationship, receptor mutagenesis and receptor modeling investigation. (Runyon SP, Mosier PD, Roth BL, Glennon RA, Westkaemper RB) J Med Chem 2008 Nov 13;51(21):6808-28       37 Citations
1Interplay of reverse transcriptase inhibitor therapy and gag p6 diversity in HIV type 1 subtype G and CRF02_AG. (Ojesina AI, Chaplin B, Sankalé JL, Murphy R, Idigbe E, Adewole I, Ekong E, Idoko J, Kanki PJ) AIDS Res Hum Retroviruses 2008 Sep;24(9):1167-74       7 Citations
1The dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae contains two active-site histidine residues. (Gillner DM, Bienvenue DL, Nocek BP, Joachimiak A, Zachary V, Bennett B, Holz RC) J Biol Inorg Chem 2009 Jan;14(1):1-10       19 Citations
1G-protein binding features and regulation of the RalGDS family member, RGL2. (Ferro E, Magrini D, Guazzi P, Fischer TH, Pistolesi S, Pogni R, White GC, Trabalzini L) Biochem J 2008 Oct 01;415(1):145-54       7 Citations
1Tom1l2 hypomorphic mice exhibit increased incidence of infections and tumors and abnormal immunologic response. (Girirajan S, Hauck PM, Williams S, Vlangos CN, Szomju BB, Solaymani-Kohal S, Mosier PD, White KL Jr, McCoy K, Elsea SH) Mamm Genome 2008 Apr;19(4):246-62       20 Citations
1Biochemical and structural basis for feedback inhibition of mevalonate kinase and isoprenoid metabolism. (Fu Z, Voynova NE, Herdendorf TJ, Miziorko HM, Kim JJ) Biochemistry 2008 Mar 25;47(12):3715-24       33 Citations
2The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominantly unstructured protein. (Hayes PL, Lytle BL, Volkman BF, Peterson FC) Protein Sci 2008 Mar;17(3):571-6       20 Citations
1Dimeric heat shock protein 40 binds radial spokes for generating coupled power strokes and recovery strokes of 9 + 2 flagella. (Yang C, Owen HA, Yang P) J Cell Biol 2008 Jan 28;180(2):403-15       47 Citations
1Characterization of HIV type 1 reverse transcriptase mutations in infants infected by mothers who received peripartum nevirapine prophylaxis in Jos, Nigeria. (Ojesina AI, Mullins C, Imade G, Samuels J, Sankalé JL, Pam S, Sagay S, Idoko J, Kanki PJ) AIDS Res Hum Retroviruses 2007 Dec;23(12):1587-92       7 Citations
1Mapping the specific cytoprotective interaction of humanin with the pro-apoptotic protein bid. (Choi J, Zhai D, Zhou X, Satterthwait A, Reed JC, Marassi FM) Chem Biol Drug Des 2007 Nov;70(5):383-92       18 Citations
1Functional analysis of human mutations in homeodomain transcription factor PITX3. (Sakazume S, Sorokina E, Iwamoto Y, Semina EV) BMC Mol Biol 2007 Sep 21;8:84       32 Citations
1Molecular characterization of a novel intracellular ADP-ribosyl cyclase. (Churamani D, Boulware MJ, Geach TJ, Martin AC, Moy GW, Su YH, Vacquier VD, Marchant JS, Dale L, Patel S) PLoS One 2007 Aug 29;2(8):e797       29 Citations
1Expression of SMARCB1 modulates steroid sensitivity in human lymphoblastoid cells: identification of a promoter SNP that alters PARP1 binding and SMARCB1 expression. (Pottier N, Cheok MH, Yang W, Assem M, Tracey L, Obenauer JC, Panetta JC, Relling MV, Evans WE) Hum Mol Genet 2007 Oct 01;16(19):2261-71       40 Citations
1The inositol 1,4,5-trisphosphate receptor (Itpr) gene family in Xenopus: identification of type 2 and type 3 inositol 1,4,5-trisphosphate receptor subtypes. (Zhang D, Boulware MJ, Pendleton MR, Nogi T, Marchant JS) Biochem J 2007 Jun 15;404(3):383-91       12 Citations
1Evolution of melanopsin photoreceptors: discovery and characterization of a new melanopsin in nonmammalian vertebrates. (Bellingham J, Chaurasia SS, Melyan Z, Liu C, Cameron MA, Tarttelin EE, Iuvone PM, Hankins MW, Tosini G, Lucas RJ) PLoS Biol 2006 Jul;4(8):e254       169 Citations
1Sequence analysis of the complete mitochondrial DNA in 10 commonly used inbred rat strains. (Schlick NE, Jensen-Seaman MI, Orlebeke K, Kwitek AE, Jacob HJ, Lazar J) Am J Physiol Cell Physiol 2006 Dec;291(6):C1183-92       41 Citations
1A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. (Li L, Cheng AS, Jin VX, Paik HH, Fan M, Li X, Zhang W, Robarge J, Balch C, Davuluri RV, Kim S, Huang TH, Nephew KP) Bioinformatics 2006 Sep 15;22(18):2210-6       12 Citations
1Selection of antisense oligonucleotides based on multiple predicted target mRNA structures. (Bo X, Lou S, Sun D, Shu W, Yang J, Wang S) BMC Bioinformatics 2006 Mar 09;7:122       11 Citations
1Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs. (Jin VX, Singer GA, Agosto-Pérez FJ, Liyanarachchi S, Davuluri RV) BMC Bioinformatics 2006 Mar 07;7:114       62 Citations
3laminin alpha 1 gene is essential for normal lens development in zebrafish. (Zinkevich NS, Bosenko DV, Link BA, Semina EV) BMC Dev Biol 2006 Mar 07;6:13       41 Citations
2Integration into the phage attachment site, attB, impairs multicellular differentiation in Stigmatella aurantiaca. (Müller S, Shen H, Hofmann D, Schairer HU, Kirby JR) J Bacteriol 2006 Mar;188(5):1701-9       9 Citations
1The flagellar motility of Chlamydomonas pf25 mutant lacking an AKAP-binding protein is overtly sensitive to medium conditions. (Yang C, Yang P) Mol Biol Cell 2006 Jan;17(1):227-38       25 Citations
1Molecular cloning and characterization of bovine P-selectin glycoprotein ligand-1. (Xu J, Cai J, Barger BA, Peek S, Darien BJ) Vet Immunol Immunopathol 2006 Mar 15;110(1-2):155-61       6 Citations
1Purification and characterization of the L-Ara4N transferase protein ArnT from Salmonella typhimurium. (Bretscher LE, Morrell MT, Funk AL, Klug CS) Protein Expr Purif 2006 Mar;46(1):33-9       16 Citations
1A Munc13/RIM/Rab3 tripartite complex: from priming to plasticity? (Dulubova I, Lou X, Lu J, Huryeva I, Alam A, Schneggenburger R, Südhof TC, Rizo J) EMBO J 2005 Aug 17;24(16):2839-50       210 Citations
1Interaction of calmodulin with the serotonin 5-hydroxytryptamine2A receptor. A putative regulator of G protein coupling and receptor phosphorylation by protein kinase C. (Turner JH, Raymond JR) J Biol Chem 2005 Sep 02;280(35):30741-50       58 Citations
1Spi-1 and Spi-B control the expression of the Grap2 gene in B cells. (Garrett-Sinha LA, Hou P, Wang D, Grabiner B, Araujo E, Rao S, Yun TJ, Clark EA, Simon MC, Clark MR) Gene 2005 Jun 20;353(1):134-46       18 Citations
1Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments. (Liu H, Tarima S, Borders AS, Getchell TV, Getchell ML, Stromberg AJ) BMC Bioinformatics 2005 Apr 25;6:106       44 Citations
2Zebrafish pitx3 is necessary for normal lens and retinal development. (Shi X, Bosenko DV, Zinkevich NS, Foley S, Hyde DR, Semina EV, Vihtelic TS) Mech Dev 2005 Apr;122(4):513-27       64 Citations
1Site-directed mutagenesis analysis of amino acids critical for activity of the type I signal peptidase of the archaeon Methanococcus voltae. (Bardy SL, Ng SY, Carnegie DS, Jarrell KF) J Bacteriol 2005 Feb;187(3):1188-91       23 Citations
1IC138 is a WD-repeat dynein intermediate chain required for light chain assembly and regulation of flagellar bending. (Hendrickson TW, Perrone CA, Griffin P, Wuichet K, Mueller J, Yang P, Porter ME, Sale WS) Mol Biol Cell 2004 Dec;15(12):5431-42       92 Citations
1Nuclear localization of angiotensinogen in astrocytes. (Sherrod M, Liu X, Zhang X, Sigmund CD) Am J Physiol Regul Integr Comp Physiol 2005 Feb;288(2):R539-46       56 Citations
1ExoU is a potent intracellular phospholipase. (Sato H, Frank DW) Mol Microbiol 2004 Sep;53(5):1279-90       243 Citations
1Mutations in PITX2 may contribute to cases of omphalocele and VATER-like syndromes. (Katz LA, Schultz RE, Semina EV, Torfs CP, Krahn KN, Murray JC) Am J Med Genet A 2004 Oct 15;130A(3):277-83       22 Citations
1Analysis of chimeric chemoreceptors in Bacillus subtilis reveals a role for CheD in the function of the McpC HAMP domain. (Kristich CJ, Ordal GW) J Bacteriol 2004 Sep;186(17):5950-5       17 Citations
1Crystal structure of At2g03760, a putative steroid sulfotransferase from Arabidopsis thaliana. (Smith DW, Johnson KA, Bingman CA, Aceti DJ, Blommel PG, Wrobel RL, Frederick RO, Zhao Q, Sreenath H, Fox BG, Volkman BF, Jeon WB, Newman CS, Ulrich EL, Hegeman AD, Kimball T, Thao S, Sussman MR, Markley JL, Phillips GN Jr) Proteins 2004 Dec 01;57(4):854-7       13 Citations
1The C-terminus of botulinum neurotoxin type A light chain contributes to solubility, catalysis, and stability. (Baldwin MR, Bradshaw M, Johnson EA, Barbieri JT) Protein Expr Purif 2004 Sep;37(1):187-95       73 Citations
1The Che4 pathway of Myxococcus xanthus regulates type IV pilus-mediated motility. (Vlamakis HC, Kirby JR, Zusman DR) Mol Microbiol 2004 Jun;52(6):1799-811       55 Citations
3Structure of uPAR, plasminogen, and sugar-binding sites of the 300 kDa mannose 6-phosphate receptor. (Olson LJ, Yammani RD, Dahms NM, Kim JJ) EMBO J 2004 May 19;23(10):2019-28       55 Citations
1Conserved enhancer in the serum response factor promoter controls expression during early coronary vasculogenesis. (Nelson TJ, Duncan SA, Misra RP) Circ Res 2004 Apr 30;94(8):1059-66       17 Citations
1Tyrosine phosphorylation of GluR2 is required for insulin-stimulated AMPA receptor endocytosis and LTD. (Ahmadian G, Ju W, Liu L, Wyszynski M, Lee SH, Dunah AW, Taghibiglou C, Wang Y, Lu J, Wong TP, Sheng M, Wang YT) EMBO J 2004 Mar 10;23(5):1040-50       247 Citations
2Structure of the hypothetical protein At3g17210 from Arabidopsis thaliana. (Lytle BL, Peterson FC, Kjer KL, Frederick RO, Zhao Q, Thao S, Bingman C, Johnson KA, Phillips GN Jr, Volkman BF) J Biomol NMR 2004 Apr;28(4):397-400       8 Citations
1Structures of isobutyryl-CoA dehydrogenase and enzyme-product complex: comparison with isovaleryl- and short-chain acyl-CoA dehydrogenases. (Battaile KP, Nguyen TV, Vockley J, Kim JJ) J Biol Chem 2004 Apr 16;279(16):16526-34       61 Citations
1Cleavage of preflagellins by an aspartic acid signal peptidase is essential for flagellation in the archaeon Methanococcus voltae. (Bardy SL, Jarrell KF) Mol Microbiol 2003 Nov;50(4):1339-47       109 Citations
1Analysis of differential gene expression in Echinococcus multilocularis larval stages by means of spliced leader differential display. (Brehm K, Wolf M, Beland H, Kroner A, Frosch M) Int J Parasitol 2003 Sep 30;33(11):1145-59       66 Citations
1Two novel conserved motifs in the hepatitis C virus NS3 protein critical for helicase action. (Lam AM, Keeney D, Frick DN) J Biol Chem 2003 Nov 07;278(45):44514-24       56 Citations
1CrkIII: a novel and biologically distinct member of the Crk family of adaptor proteins. (Prosser S, Sorokina E, Pratt P, Sorokin A) Oncogene 2003 Jul 31;22(31):4799-806       27 Citations
4The mechanism of action of the Pseudomonas aeruginosa-encoded type III cytotoxin, ExoU. (Sato H, Frank DW, Hillard CJ, Feix JB, Pankhaniya RR, Moriyama K, Finck-Barbançon V, Buchaklian A, Lei M, Long RM, Wiener-Kronish J, Sawa T) EMBO J 2003 Jun 16;22(12):2959-69       300 Citations
1Expression, localization and alternative function of cytoplasmic asparaginyl-tRNA synthetase in Brugia malayi. (Kron M, Petridis M, Milev Y, Leykam J, Härtlein M) Mol Biochem Parasitol 2003 Jun;129(1):33-9       23 Citations
1Identification and molecular characterisation of a gene encoding a member of the insulin receptor family in Echinococcus multilocularis. (Konrad C, Kroner A, Spiliotis M, Zavala-Góngora R, Brehm K) Int J Parasitol 2003 Mar;33(3):301-12       82 Citations
1Radiation hybrid map, physical map, and low-pass genomic sequence of the canine prcd region on CFA9 and comparative mapping with the syntenic region on human chromosome 17. (Sidjanin DJ, Miller B, Kijas J, McElwee J, Pillardy J, Malek J, Pai G, Feldblyum T, Fraser C, Acland G, Aguirre G) Genomics 2003 Feb;81(2):138-48       15 Citations
1Suppression of lens growth by alphaA-crystallin promoter-driven expression of diphtheria toxin results in disruption of retinal cell organization in zebrafish. (Kurita R, Sagara H, Aoki Y, Link BA, Arai K, Watanabe S) Dev Biol 2003 Mar 01;255(1):113-27       98 Citations
1Expression and characterization of the FXYD ion transport regulators for NMR structural studies in lipid micelles and lipid bilayers. (Crowell KJ, Franzin CM, Koltay A, Lee S, Lucchese AM, Snyder BC, Marassi FM) Biochim Biophys Acta 2003 Jan 31;1645(1):15-21       19 Citations
1The fusion protein core of measles virus forms stable coiled-coil trimer. (Zhu J, Zhang CW, Qi Y, Tien P, Gao GF) Biochem Biophys Res Commun 2002 Dec 20;299(5):897-902       27 Citations
1Molecular cloning and sequencing of the human heme-regulated eukaryotic initiation factor 2 alpha (eIF-2 alpha) kinase from bone marrow culture. (Omasa T, Chen YG, Mantalaris A, Tsai YC, Wu JH) DNA Seq 2002 Jun;13(3):133-7       4 Citations
1P-type lectins. (Dahms N, Hancock MK) Biochim Biophys Acta 2002 Sep 19;1572(2-3):317-40       195 Citations
1Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence. (Beres SB, Sylva GL, Barbian KD, Lei B, Hoff JS, Mammarella ND, Liu MY, Smoot JC, Porcella SF, Parkins LD, Campbell DS, Smith TM, McCormick JK, Leung DY, Schlievert PM, Musser JM) Proc Natl Acad Sci U S A 2002 Jul 23;99(15):10078-83       429 Citations
1Characterization of an iron-sulfur cluster assembly protein (ISU1) from Schizosaccharomyces pombe. (Wu G, Mansy SS, Wu Sp SP, Surerus KK, Foster MW, Cowan JA) Biochemistry 2002 Apr 16;41(15):5024-32       73 Citations
1FlaK of the archaeon Methanococcus maripaludis possesses preflagellin peptidase activity. (Bardy SL, Jarrell KF) FEMS Microbiol Lett 2002 Feb 19;208(1):53-9       83 Citations
1Ty5 gag mutations increase retrotransposition and suggest a role for hydrogen bonding in the function of the nucleocapsid zinc finger. (Gao X, Rowley DJ, Gai X, Voytas DF) J Virol 2002 Apr;76(7):3240-7       5 Citations
1The structure of a binary complex between a mammalian mevalonate kinase and ATP: insights into the reaction mechanism and human inherited disease. (Fu Z, Wang M, Potter D, Miziorko HM, Kim JJ) J Biol Chem 2002 May 17;277(20):18134-42       110 Citations
1Mapping of IFN-beta epitopes important for receptor binding and biologic activation: comparison of results achieved using antibody-based methods and alanine substitution mutagenesis. (Runkel L, De Dios C, Karpusas M, Baker D, Li Z, Zafari M, Betzenhauser M, Muldowney C, Miller S, Redlich PN, Grossberg SE, Whitty A, Hochman PS) J Interferon Cytokine Res 2001 Nov;21(11):931-41       29 Citations
2CheC is related to the family of flagellar switch proteins and acts independently from CheD to control chemotaxis in Bacillus subtilis. (Kirby JR, Kristich CJ, Saulmon MM, Zimmer MA, Garrity LF, Zhulin IB, Ordal GW) Mol Microbiol 2001 Nov;42(3):573-85       56 Citations
1Oxygen-dependent expression of hypoxia-inducible factor-1alpha in renal medullary cells of rats. (Zou AP, Yang ZZ, Li PL, Cowley AW JR) Physiol Genomics 2001 Aug 28;6(3):159-68       50 Citations
1AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices. (Elgavish T, Cannone JJ, Lee JC, Harvey SC, Gutell RR) J Mol Biol 2001 Jul 20;310(4):735-53       58 Citations
1Localization of N-terminal sequences in human AMP deaminase isoforms that influence contractile protein binding. (Mahnke-Zizelman DK, Sabina RL) Biochem Biophys Res Commun 2001 Jul 13;285(2):489-95       21 Citations
1A cDNA from human bone marrow encoding a protein exhibiting homology to the ATP1gamma1/PLM/MAT8 family of transmembrane proteins. (Omasa T, Chen YG, Mantalaris A, Wu JH) Biochim Biophys Acta 2001 Jan 26;1517(2):307-10       2 Citations
1Solution structure of a type I dockerin domain, a novel prokaryotic, extracellular calcium-binding domain. (Lytle BL, Volkman BF, Westler WM, Heckman MP, Wu JH) J Mol Biol 2001 Mar 30;307(3):745-53       74 Citations
1Identification of a gene, ABCG5, important in the regulation of dietary cholesterol absorption. (Lee MH, Lu K, Hazard S, Yu H, Shulenin S, Hidaka H, Kojima H, Allikmets R, Sakuma N, Pegoraro R, Srivastava AK, Salen G, Dean M, Patel SB) Nat Genet 2001 Jan;27(1):79-83       622 Citations
1How the Pseudomonas aeruginosa ExoS toxin downregulates Rac. (Würtele M, Wolf E, Pederson KJ, Buchwald G, Ahmadian MR, Barbieri JT, Wittinghofer A) Nat Struct Biol 2001 Jan;8(1):23-6       101 Citations
1Identification of a calmodulin-regulated soybean Ca(2+)-ATPase (SCA1) that is located in the plasma membrane. (Chung WS, Lee SH, Kim JC, Heo WD, Kim MC, Park CY, Park HC, Lim CO, Kim WB, Harper JF, Cho MJ) Plant Cell 2000 Aug;12(8):1393-407       101 Citations
1Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy. (Lytle BL, Volkman BF, Westler WM, Wu JH) Arch Biochem Biophys 2000 Jul 15;379(2):237-44       59 Citations
1Sulfite:Cytochrome c oxidoreductase from Thiobacillus novellus. Purification, characterization, and molecular biology of a heterodimeric member of the sulfite oxidase family. (Kappler U, Bennett B, Rethmeier J, Schwarz G, Deutzmann R, McEwan AG, Dahl C) J Biol Chem 2000 May 05;275(18):13202-12       155 Citations
1Molecular cloning, tissue-specific expression, and chromosomal localization of a novel nerve growth factor-regulated G-protein- coupled receptor, nrg-1. (Glickman M, Malek RL, Kwitek-Black AE, Jacob HJ, Lee NH) Mol Cell Neurosci 1999 Aug;14(2):141-52       67 Citations
1Cloning and preliminary characterization of a calcium-binding protein closely related to nucleolin on the apical surface of inner medullary collecting duct cells. (Sorokina EA, Kleinman JG) J Biol Chem 1999 Sep 24;274(39):27491-6       39 Citations
1Pseudomonas aeruginosa exoenzyme S, a double ADP-ribosyltransferase, resembles vertebrate mono-ADP-ribosyltransferases. (Ganesan AK, Mende-Mueller L, Selzer J, Barbieri JT) J Biol Chem 1999 Apr 02;274(14):9503-8       33 Citations
1Mutations in Drosophila enabled and rescue by human vasodilator-stimulated phosphoprotein (VASP) indicate important functional roles for Ena/VASP homology domain 1 (EVH1) and EVH2 domains. (Ahern-Djamali SM, Comer AR, Bachmann C, Kastenmeier AS, Reddy SK, Beckerle MC, Walter U, Hoffmann FM) Mol Biol Cell 1998 Aug;9(8):2157-71       96 Citations
2Pseudomonas aeruginosa exoenzyme S ADP-ribosylates Ras at multiple sites. (Ganesan AK, Frank DW, Misra RP, Schmidt G, Barbieri JT) J Biol Chem 1998 Mar 27;273(13):7332-7       102 Citations
1A new human homeobox gene OGI2X is a member of the most conserved homeobox gene family and is expressed during heart development in mouse. (Semina EV, Reiter RS, Murray JC) Hum Mol Genet 1998 Mar;7(3):415-22       47 Citations
2Canine mast cell adenosine receptors: cloning and expression of the A3 receptor and evidence that degranulation is mediated by the A2B receptor. (Auchampach JA, Jin X, Wan TC, Caughey GH, Linden J) Mol Pharmacol 1997 Nov;52(5):846-60       177 Citations
1The 75-kilodalton antigen of Bartonella bacilliformis is a structural homolog of the cell division protein FtsZ. (Padmalayam I, Anderson B, Kron M, Kelly T, Baumstark B) J Bacteriol 1997 Jul;179(14):4545-52       20 Citations
1The amino acid sequence of Rhodobacter sphaeroides dimethyl sulfoxide reductase. (Barber MJ, Van Valkenburgh H, Trimboli AJ, Pollock VV, Neame PJ, Bastian NR) Arch Biochem Biophys 1995 Jul 10;320(2):266-75       14 Citations
1Illegitimate recombinations between c-myc and immunoglobulin loci are remodeled by deletions in mouse plasmacytomas but not in Burkitt's lymphomas. (Müller JR, Janz S, Potter M) Curr Top Microbiol Immunol 1995;194:425-9       1 Citation
1Characterization and environmental regulation of outer membrane proteins in Xenorhabdus nematophilus. (Leisman GB, Waukau J, Forst SA) Appl Environ Microbiol 1995 Jan;61(1):200-4       35 Citations
1Construction and expression of a flavocytochrome b5 chimera. (Quinn GB, Trimboli AJ, Barber MJ) J Biol Chem 1994 May 06;269(18):13375-81       9 Citations
1A single amino acid substitution flanking the fourth calcium binding domain of alpha IIb prevents maturation of the alpha IIb beta 3 integrin complex. (Wilcox DA, Wautier JL, Pidard D, Newman PJ) J Biol Chem 1994 Feb 11;269(6):4450-7       84 Citations
1Characterization of novel HLA-DPB1 alleles by oligotyping and nucleotide sequencing. (Hessner MJ, Baxter-Lowe LA) Tissue Antigens 1992 Nov;40(5):261-3       11 Citations
1Transcriptional regulation of the apolipoprotein A-I gene. Species-specific expression correlates with rates of gene transcription. (Sorci-Thomas M, Kearns MW) J Biol Chem 1991 Sep 25;266(27):18045-50       19 Citations