Faculty Collaboration Database

All Publications for Brian F. Volkman PhD (257)

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• Extended repertoire of CXC chemokines acting as agonists and antagonists of the human and murine atypical chemokine receptor ACKR2. (Luís R, Volkman BF, Szpakowska M, Chevigné A) J Leukoc Biol 2025 Apr 23;117(4) PMID: 39903605 PMCID: PMC12017343 Scopus ID: 2-s2.0-105003675712 02/04/2025
• The multifaceted role of XCL1 in health and disease. (Syed M, Dishman AF, Volkman BF, Walker TL) Protein Sci 2025 Feb;34(2):e70032 PMID: 39840812 PMCID: PMC11751857 Scopus ID: 2-s2.0-85215400606 01/22/2025
• Discovery of Selective Cyclic d-Sulfopeptide Ligands of the Chemokine CCL22 via Mirror-Image mRNA Display with Genetic Reprogramming (Zhang BB, Harrison K, Zhong Y, Maxwell JWC, Ford DJ, Calvey LP, So SS, Peterson FC, Volkman BF, Stone MJ, Bhusal RP, Kulkarni SS, Payne RJ) Journal of the American Chemical Society 18 December 2024;146(50):34253-34259 Scopus ID: 2-s2.0-85211025577 12/18/2024
• Discovery of Selective Cyclic d-Sulfopeptide Ligands of the Chemokine CCL22 via Mirror-Image mRNA Display with Genetic Reprogramming. (Zhang BB, Harrison K, Zhong Y, Maxwell JWC, Ford DJ, Calvey LP, So SS, Peterson FC, Volkman BF, Stone MJ, Bhusal RP, Kulkarni SS, Payne RJ) J Am Chem Soc 2024 Dec 18;146(50):34253-34259 PMID: 39629944 Scopus ID: 2-s2.0-85211025577 12/04/2024
• Constitutive activity of an atypical chemokine receptor revealed by inverse agonistic nanobodies. (Perez Almeria CV, Otun O, Schlimgen R, Lamme TD, Crudden C, Youssef N, Musli L, Jenjak S, Bobkov V, Drube J, Hoffmann C, Volkman BF, Granier S, Bechara C, Siderius M, Heukers R, Schafer CT, Smit MJ) bioRxiv 2024 Nov 04 PMID: 39574661 PMCID: PMC11580867 11/22/2024
• Molecular basis for chemokine recognition and activation of XCR1. (Zhang X, Schlimgen RR, Singh S, Tomani MP, Volkman BF, Zhang C) Proc Natl Acad Sci U S A 2024 Nov 26;121(48):e2405732121 PMID: 39565315 PMCID: PMC11621518 Scopus ID: 2-s2.0-85210106138 11/20/2024
• Chemokine Receptor N-Terminus Charge Dictates Reliance on Post-Translational Modifications for Effective Ligand Capture and Following Boosting by Defense Peptides. (Xu T, Schou AS, Lackman JJ, Barrio-Calvo M, Verhallen L, Goth CK, Jensen BAH, Veldkamp CT, Volkman BF, Peterson FC, Hjortø GM) Int J Mol Sci 2024 Oct 09;25(19) PMID: 39409188 PMCID: PMC11477141 Scopus ID: 2-s2.0-85206465330 10/16/2024
• Chemokines Kill Bacteria by Binding Anionic Phospholipids without Triggering Antimicrobial Resistance. (Pontejo SM, Martinez S, Zhao A, Barnes K, de Anda J, Alimohamadi H, Lee EY, Dishman AF, Volkman BF, Wong GCL, Garboczi DN, Ballesteros A, Murphy PM) bioRxiv 2024 Jul 25 PMID: 39091850 PMCID: PMC11291121 08/02/2024
• Structural basis for selectivity and antagonism in extracellular GPCR-nanobodies. (Schlimgen RR, Peterson FC, Heukers R, Smit MJ, McCorvy JD, Volkman BF) Nat Commun 2024 May 30;15(1):4611 PMID: 38816420 PMCID: PMC11139983 Scopus ID: 2-s2.0-85194992751 05/31/2024
• Deep computational phenotyping of genomic variants impacting the SET domain of KMT2C reveal molecular mechanisms for their dysfunction. (Jorge SD, Chi YI, Mazaba JL, Haque N, Wagenknecht J, Smith BC, Volkman BF, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R) Front Genet 2023;14:1291307 PMID: 38090150 PMCID: PMC10715303 Scopus ID: 2-s2.0-85179362461 12/13/2023
• A multi-layered computational structural genomics approach enhances domain-specific interpretation of Kleefstra syndrome variants in EHMT1. (Chi YI, Jorge SD, Jensen DR, Smith BC, Volkman BF, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R) Comput Struct Biotechnol J 2023;21:5249-5258 PMID: 37954151 PMCID: PMC10632586 11/13/2023
• An orthogonalized PYR1-based CID module with reprogrammable ligand-binding specificity. (Park SY, Qiu J, Wei S, Peterson FC, Beltrán J, Medina-Cucurella AV, Vaidya AS, Xing Z, Volkman BF, Nusinow DA, Whitehead TA, Wheeldon I, Cutler SR) Nat Chem Biol 2024 Jan;20(1):103-110 PMID: 37872402 PMCID: PMC10746540 Scopus ID: 2-s2.0-85174576715 10/24/2023
• Fragment-based screening by protein-detected NMR spectroscopy. (Kerber PJ, Nuñez R, Jensen DR, Zhou AL, Peterson FC, Hill RB, Volkman BF, Smith BC) Methods Enzymol 2023;690:285-310 PMID: 37858532 PMCID: PMC10657026 Scopus ID: 2-s2.0-85166280504 10/20/2023
• Beyond structural bioinformatics for genomics with dynamics characterization of an expanded KRAS mutational landscape. (Ratnasinghe BD, Haque N, Wagenknecht JB, Jensen DR, Valdivia Esparza GK, Leverence EN, Milech De Assuncao T, Mathison AJ, Lomberk G, Smith BC, Volkman BF, Urrutia R, Zimmermann MT) Comput Struct Biotechnol J 2023;21:4790-4803 PMID: 37841325 PMCID: PMC10570560 10/16/2023
• A Multi-Layered Computational Structural Genomics Approach Enhances Domain-Specific Interpretation of Kleefstra Syndrome Variants in EHMT1. (Chi YI, Jorge SD, Jensen DR, Smith BC, Volkman BF, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R) bioRxiv 2023 Sep 07 PMID: 37786696 PMCID: PMC10541560 10/03/2023
• Development and validation of a purification system for functional full-length human SR-B1 and CD36. (Powers HR, Jenjak SE, Volkman BF, Sahoo D) J Biol Chem 2023 Oct;299(10):105187 PMID: 37625590 PMCID: PMC10509710 Scopus ID: 2-s2.0-85171377774 08/26/2023
• Design of stimulus-responsive two-state hinge proteins. (Praetorius F, Leung PJY, Tessmer MH, Broerman A, Demakis C, Dishman AF, Pillai A, Idris A, Juergens D, Dauparas J, Li X, Levine PM, Lamb M, Ballard RK, Gerben SR, Nguyen H, Kang A, Sankaran B, Bera AK, Volkman BF, Nivala J, Stoll S, Baker D) Science 2023 Aug 18;381(6659):754-760 PMID: 37590357 PMCID: PMC10697137 Scopus ID: 2-s2.0-85168284894 08/17/2023
• The Chemokine, CCL20, and Its Receptor, CCR6, in the Pathogenesis and Treatment of Psoriasis and Psoriatic Arthritis. (Shi ZR, Mabuchi T, Riutta SJ, Wu X, Peterson FC, Volkman BF, Hwang ST) J Psoriasis Psoriatic Arthritis 2023 Jul;8(3):107-117 PMID: 39296310 PMCID: PMC11361516 07/01/2023
• The Chemokine, CCL20, and Its Receptor, CCR6, in the Pathogenesis and Treatment of Psoriasis and Psoriatic Arthritis (Shi ZR, Mabuchi T, Riutta SJ, Wu X, Peterson FC, Volkman BF, Hwang ST) Journal of Psoriasis and Psoriatic Arthritis July 2023;8(3):107-117 Scopus ID: 2-s2.0-85150743226 07/01/2023
• Metamorphic protein folding as evolutionary adaptation. (Dishman AF, Volkman BF) Trends Biochem Sci 2023 Aug;48(8):665-672 PMID: 37270322 PMCID: PMC10526677 Scopus ID: 2-s2.0-85160689793 06/04/2023
• Beyond Structural Bioinformatics for Genomics with Dynamics Characterization of an Expanded KRAS Mutational Landscape. (Ratnasinghe BD, Haque N, Wagenknecht JB, Jensen DR, Esparza GV, Leverence EN, De Assuncao TM, Mathison AJ, Lomberk G, Smith BC, Volkman BF, Urrutia R, Zimmermann MT) bioRxiv 2023 Apr 28 PMID: 37207265 PMCID: PMC10189839 05/19/2023
• Prospects for targeting ACKR1 in cancer and other diseases. (Crawford KS, Volkman BF) Front Immunol 2023;14:1111960 PMID: 37006247 PMCID: PMC10050359 Scopus ID: 2-s2.0-85151083879 04/04/2023
• De novo design of small beta barrel proteins. (Kim DE, Jensen DR, Feldman D, Tischer D, Saleem A, Chow CM, Li X, Carter L, Milles L, Nguyen H, Kang A, Bera AK, Peterson FC, Volkman BF, Ovchinnikov S, Baker D) Proc Natl Acad Sci U S A 2023 Mar 14;120(11):e2207974120 PMID: 36897987 PMCID: PMC10089152 Scopus ID: 2-s2.0-85150007162 03/11/2023
• A modified ELISA assay differentiates CCL20 locked dimers from wild-type monomers. (Wu X, Clarke WR, Koplinski CA, Peterson FC, Dwinell MB, Wei G, Chao E, Huynh M, Yamada D, Volkman BF, Hwang ST) J Immunol Methods 2023 Apr;515:113453 PMID: 36863695 PMCID: PMC10715733 Scopus ID: 2-s2.0-85150034077 03/03/2023
• Fragment-based drug discovery of small molecule ligands for the human chemokine CCL28. (Zhou AL, Jensen DR, Peterson FC, Thomas MA, Schlimgen RR, Dwinell MB, Smith BC, Volkman BF) SLAS Discov 2023 Jun;28(4):163-169 PMID: 36841432 PMCID: PMC10339762 Scopus ID: 2-s2.0-85149845436 02/26/2023
• Mechanistic Insight into the Suppression of Polyglutamine Aggregation by SRCP1. (Haver HN, Wedemeyer M, Butcher E, Peterson FC, Volkman BF, Scaglione KM) ACS Chem Biol 2023 Mar 17;18(3):549-560 PMID: 36791332 PMCID: PMC10023506 Scopus ID: 2-s2.0-85148304370 02/16/2023
• DPP4-Truncated CXCL12 Alters CXCR4/ACKR3 Signaling, Osteogenic Cell Differentiation, Migration, and Senescence. (Elmansi AM, Eisa NH, Periyasamy-Thandavan S, Kondrikova G, Kondrikov D, Calkins MM, Aguilar-Pérez A, Chen J, Johnson M, Shi XM, Reitman C, McGee-Lawrence ME, Crawford KS, Dwinell MB, Volkman BF, Blumer JB, Luttrell LM, McCorvy JD, Hill WD) ACS Pharmacol Transl Sci 2023 Jan 13;6(1):22-39 PMID: 36659961 PMCID: PMC9844133 01/21/2023
• DPP4-Truncated CXCL12 Alters CXCR4/ACKR3 Signaling, Osteogenic Cell Differentiation, Migration, and Senescence (Elmansi AM, Eisa NH, Periyasamy-Thandavan S, Kondrikova G, Kondrikov D, Calkins MM, Aguilar-Pérez A, Chen J, Johnson M, Shi XM, Reitman C, McGee-Lawrence ME, Crawford KS, Dwinell MB, Volkman BF, Blumer JB, Luttrell LM, McCorvy JD, Hill WD) ACS Pharmacology and Translational Science 13 January 2023;6(1):22-39 Scopus ID: 2-s2.0-85143982229 01/13/2023
• Fragment-based screening by protein-detected NMR spectroscopy (Kerber PJ, Nuñez R, Jensen DR, Zhou AL, Peterson FC, Hill RB, Volkman BF, Smith BC) Methods in Enzymology January 2023;690:285-310 Scopus ID: 2-s2.0-85166280504 01/01/2023
• Beyond structural bioinformatics for genomics with dynamics characterization of an expanded KRAS mutational landscape (Ratnasinghe BD, Haque N, Wagenknecht JB, Jensen DR, Valdivia Esparza GK, Leverence EN, Milech De Assuncao T, Mathison AJ, Lomberk G, Smith BC, Volkman BF, Urrutia R, Zimmermann MT) Computational and Structural Biotechnology Journal January 2023;21:4790-4803 Scopus ID: 2-s2.0-85173171942 01/01/2023
• A multi-layered computational structural genomics approach enhances domain-specific interpretation of Kleefstra syndrome variants in EHMT1 (Chi YI, Jorge SD, Jensen DR, Smith BC, Volkman BF, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R) Computational and Structural Biotechnology Journal January 2023;21:5249-5258 Scopus ID: 2-s2.0-85174744984 01/01/2023
• Prospects for targeting ACKR1 in cancer and other diseases (Crawford KS, Volkman BF) Frontiers in Immunology 2023;14 Scopus ID: 2-s2.0-85151083879 01/01/2023
• A new obligate CXCL4–CXCL12 heterodimer for studying chemokine heterodimer activities and mechanisms (Nguyen KTP, Volkman B, Dréau D, Nesmelova IV) Scientific Reports December 2022;12(1) Scopus ID: 2-s2.0-85139877877 12/01/2022
• Selective and Cell-Active PBRM1 Bromodomain Inhibitors Discovered through NMR Fragment Screening. (Shishodia S, Nuñez R, Strohmier BP, Bursch KL, Goetz CJ, Olp MD, Jensen DR, Fenske TG, Ordonez-Rubiano SC, Blau ME, Roach MK, Peterson FC, Volkman BF, Dykhuizen EC, Smith BC) J Med Chem 2022 Oct 27;65(20):13714-13735 PMID: 36227159 PMCID: PMC9630929 Scopus ID: 2-s2.0-85140311972 10/14/2022
• Conformational selection guides β-arrestin recruitment at a biased G protein-coupled receptor. (Kleist AB, Jenjak S, Sente A, Laskowski LJ, Szpakowska M, Calkins MM, Anderson EI, McNally LM, Heukers R, Bobkov V, Peterson FC, Thomas MA, Chevigné A, Smit MJ, McCorvy JD, Babu MM, Volkman BF) Science 2022 Jul 08;377(6602):222-228 PMID: 35857540 PMCID: PMC9574477 Scopus ID: 2-s2.0-85133822505 07/21/2022
• Conformational selection guides β-arrestin recruitment at a biased G protein–coupled receptor (Kleist AB, Jenjak S, Sente A, Laskowski LJ, Szpakowska M, Calkins MM, Anderson EI, McNally LM, Heukers R, Bobkov V, Peterson FC, Thomas MA, Chevigné A, Smit MJ, McCorvy JD, Babu MM, Volkman BF) Science 8 July 2022;377(6602):222-228 Scopus ID: 2-s2.0-85133822505 07/08/2022
• Rapid biosensor development using plant hormone receptors as reprogrammable scaffolds. (Beltrán J, Steiner PJ, Bedewitz M, Wei S, Peterson FC, Li Z, Hughes BE, Hartley Z, Robertson NR, Medina-Cucurella AV, Baumer ZT, Leonard AC, Park SY, Volkman BF, Nusinow DA, Zhong W, Wheeldon I, Cutler SR, Whitehead TA) Nat Biotechnol 2022 Dec;40(12):1855-1861 PMID: 35726092 PMCID: PMC9750858 Scopus ID: 2-s2.0-85132543880 06/22/2022
• The Extended N-Terminal Domain Confers Atypical Chemokine Receptor Properties to CXCR3-B. (D'Uonnolo G, Reynders N, Meyrath M, Abboud D, Uchański T, Laeremans T, Volkman BF, Janji B, Hanson J, Szpakowska M, Chevigné A) Front Immunol 2022;13:868579 PMID: 35720349 PMCID: PMC9198273 Scopus ID: 2-s2.0-85132304428 06/21/2022
• Structural bioinformatics enhances the interpretation of somatic mutations in KDM6A found in human cancers. (Chi YI, Stodola TJ, De Assuncao TM, Leverence EN, Smith BC, Volkman BF, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R) Comput Struct Biotechnol J 2022;20:2200-2211 PMID: 35615018 PMCID: PMC9111933 Scopus ID: 2-s2.0-85130080827 05/27/2022
• Design and discovery of metamorphic proteins. (Dishman AF, Volkman BF) Curr Opin Struct Biol 2022 Jun;74:102380 PMID: 35561475 PMCID: PMC9664977 Scopus ID: 2-s2.0-85129771683 05/14/2022
• Defining the Mutational Landscape That Affects the Histone Demethylase KDM6A/UTX in Human Cancer. (Chi YI, Stodola TJ, de Assuncao TM, Volkman B, Smith B, Mathison AJ, Lomberk G, Zimmermann MT, Urrutia R) FASEB J 2022 May;36 Suppl 1 PMID: 35555661 Scopus ID: 2-s2.0-85130046941 05/14/2022
• Structural Basis of Nanobody Induced ACKR3 Inhibition (Schlimgen R, Peterson F, Heukers R, Smit M, McCorvy J, Volkman B) FASEB journal : official publication of the Federation of American Societies for Experimental Biology 1 May 2022;36 PMID: 35552343 Scopus ID: 2-s2.0-85130030169 05/01/2022
• Tumor Derived Extracellular Vesicles Drive T Cell Exhaustion in Tumor Microenvironment through Sphingosine Mediated Signaling and Impacting Immunotherapy Outcomes in Ovarian Cancer. (Gupta P, Kadamberi IP, Mittal S, Tsaih SW, George J, Kumar S, Vijayan DK, Geethadevi A, Parashar D, Topchyan P, McAlarnen L, Volkman BF, Cui W, Zhang KYJ, Di Vizio D, Chaluvally-Raghavan P, Pradeep S) Adv Sci (Weinh) 2022 May;9(14):e2104452 PMID: 35289120 PMCID: PMC9108620 Scopus ID: 2-s2.0-85126251446 03/16/2022
• The non-ELR CXC chemokine encoded by human cytomegalovirus UL146 genotype 5 contains a C-terminal β-hairpin and induces neutrophil migration as a selective CXCR2 agonist. (Berg C, Wedemeyer MJ, Melynis M, Schlimgen RR, Hansen LH, Våbenø J, Peterson FC, Volkman BF, Rosenkilde MM, Lüttichau HR) PLoS Pathog 2022 Mar;18(3):e1010355 PMID: 35271688 PMCID: PMC8939814 Scopus ID: 2-s2.0-85127373696 03/11/2022
• Selective Boosting of CCR7-Acting Chemokines; Short Peptides Boost Chemokines with Short Basic Tails, Longer Peptides Boost Chemokines with Long Basic Tails. (Brandum EP, Jørgensen AS, Calvo MB, Spiess K, Peterson FC, Yang Z, Volkman BF, Veldkamp CT, Rosenkilde MM, Goth CK, Hjortø GM) Int J Mol Sci 2022 Jan 26;23(3) PMID: 35163323 PMCID: PMC8836243 02/16/2022
• Structural Insights into Molecular Recognition by Human Chemokine CCL19. (Lewandowski EM, Kroeck KG, Jacobs LMC, Fenske TG, Witt RN, Hintz AM, Ramsden ER, Zhang X, Peterson F, Volkman BF, Veldkamp CT, Chen Y) Biochemistry 2022 Mar 01;61(5):311-318 PMID: 35156805 PMCID: PMC9254573 Scopus ID: 2-s2.0-85125310513 02/15/2022
• Selective Boosting of CCR7-Acting Chemokines; Short Peptides Boost Chemokines with Short Basic Tails, Longer Peptides Boost Chemokines with Long Basic Tails (Brandum EP, Jørgensen AS, Calvo MB, Spiess K, Peterson FC, Yang Z, Volkman BF, Veldkamp CT, Rosenkilde MM, Goth CK, Hjortø GM) International Journal of Molecular Sciences February-1 2022;23(3) Scopus ID: 2-s2.0-85123296293 02/01/2022
• Trisubstituted 1,3,5-Triazines: The First Ligands of the sY12-Binding Pocket on Chemokine CXCL12. (Sprague DJ, Getschman AE, Fenske TG, Volkman BF, Smith BC) ACS Med Chem Lett 2021 Nov 11;12(11):1773-1782 PMID: 34795867 PMCID: PMC8592115 11/20/2021
• Trisubstituted 1,3,5-Triazines: The First Ligands of the sY12-Binding Pocket on Chemokine CXCL12 (Sprague DJ, Getschman AE, Fenske TG, Volkman BF, Smith BC) ACS Medicinal Chemistry Letters 11 November 2021;12(11):1773-1782 Scopus ID: 2-s2.0-85118771967 11/11/2021
• Specific binding-induced modulation of the XCL1 metamorphic equilibrium (Dishman AF, Peterson FC, Volkman BF) Biopolymers October 2021;112(10) Scopus ID: 2-s2.0-85091608507 10/01/2021
• The C-terminal peptide of CCL21 drastically augments CCL21 activity through the dendritic cell lymph node homing receptor CCR7 by interaction with the receptor N-terminus. (Jørgensen AS, Brandum EP, Mikkelsen JM, Orfin KA, Boilesen DR, Egerod KL, Moussouras NA, Vilhardt F, Kalinski P, Basse P, Chen YH, Yang Z, Dwinell MB, Volkman BF, Veldkamp CT, Holst PJ, Lahl K, Goth CK, Rosenkilde MM, Hjortø GM) Cell Mol Life Sci 2021 Nov;78(21-22):6963-6978 PMID: 34586443 PMCID: PMC8558179 Scopus ID: 2-s2.0-85116031161 09/30/2021
• Click-to-lead design of a picomolar ABA receptor antagonist with potent activity in vivo. (Vaidya AS, Peterson FC, Eckhardt J, Xing Z, Park SY, Dejonghe W, Takeuchi J, Pri-Tal O, Faria J, Elzinga D, Volkman BF, Todoroki Y, Mosquna A, Okamoto M, Cutler SR) Proc Natl Acad Sci U S A 2021 Sep 21;118(38) PMID: 34531324 PMCID: PMC8463862 Scopus ID: 2-s2.0-85115276330 09/18/2021
• Computational modeling reveals key molecular properties and dynamic behavior of disruptor of telomeric silencing 1-like (DOT1L) and partnering complexes involved in leukemogenesis. (Stodola TJ, Chi YI, De Assuncao TM, Leverence EN, Tripathi S, Dsouza NR, Mathison AJ, Volkman BF, Smith BC, Lomberk G, Zimmermann MT, Urrutia R) Proteins 2022 Jan;90(1):282-298 PMID: 34414607 PMCID: PMC8671179 Scopus ID: 2-s2.0-85114677469 08/21/2021
• The dimeric form of CXCL12 binds to atypical chemokine receptor 1. (Gutjahr JC, Crawford KS, Jensen DR, Naik P, Peterson FC, Samson GPB, Legler DF, Duchene J, Veldkamp CT, Rot A, Volkman BF) Sci Signal 2021 Aug 17;14(696) PMID: 34404752 PMCID: PMC9015690 Scopus ID: 2-s2.0-85114418485 08/19/2021
• Age-associated changes in microRNAs affect the differentiation potential of human mesenchymal stem cells: Novel role of miR-29b-1-5p expression. (Eisa NH, Sudharsan PT, Herrero SM, Herberg SA, Volkman BF, Aguilar-Pérez A, Kondrikov D, Elmansi AM, Reitman C, Shi X, Fulzele S, McGee-Lawrence ME, Isales CM, Hamrick MW, Johnson MH, Chen J, Hill WD) Bone 2021 Dec;153:116154 PMID: 34403754 PMCID: PMC8935397 08/18/2021
• Interactions between AMOT PPxY motifs and NEDD4L WW domains function in HIV-1 release. (Rheinemann L, Thompson T, Mercenne G, Paine EL, Peterson FC, Volkman BF, Alam SL, Alian A, Sundquist WI) J Biol Chem 2021 Aug;297(2):100975 PMID: 34284061 PMCID: PMC8368996 Scopus ID: 2-s2.0-85112823120 07/21/2021
• Metamorphic Protein Folding Encodes Multiple Anti-Candida Mechanisms in XCL1. (Dishman AF, He J, Volkman BF, Huppler AR) Pathogens 2021 Jun 17;10(6) PMID: 34204234 PMCID: PMC8235156 Scopus ID: 2-s2.0-85108986032 07/03/2021
• Targeting the CCR6/CCL20 Axis in Entheseal and Cutaneous Inflammation. (Shi Z, Garcia-Melchor E, Wu X, Getschman AE, Nguyen M, Rowland DJ, Wilson M, Sunzini F, Akbar M, Huynh M, Law T, Raychaudhuri SK, Raychaudhuri SP, Volkman BF, Millar NL, Hwang ST) Arthritis Rheumatol 2021 Dec;73(12):2271-2281 PMID: 34081845 Scopus ID: 2-s2.0-85110031008 06/04/2021
• Targeted biologic inhibition of both tumor cell-intrinsic and intercellular CLPTM1L/CRR9-mediated chemotherapeutic drug resistance. (Parashar D, Geethadevi A, McAllister D, Ebben J, Peterson FC, Jensen DR, Bishop E, Pradeep S, Volkman BF, Dwinell MB, Chaluvally-Raghavan P, James MA) NPJ Precis Oncol 2021 Mar 02;5(1):16 PMID: 33654182 PMCID: PMC7925570 Scopus ID: 2-s2.0-85109651282 03/04/2021
• Investigations on T cell transmigration in a human skin-on-chip (SoC) model. (Ren X, Getschman AE, Hwang S, Volkman BF, Klonisch T, Levin D, Zhao M, Santos S, Liu S, Cheng J, Lin F) Lab Chip 2021 Apr 20;21(8):1527-1539 PMID: 33616124 PMCID: PMC8058301 Scopus ID: 2-s2.0-85104501502 02/23/2021
• Molecular mechanics and dynamic simulations of well-known Kabuki syndrome-associated KDM6A variants reveal putative mechanisms of dysfunction. (Chi YI, Stodola TJ, De Assuncao TM, Leverence EN, Tripathi S, Dsouza NR, Mathison AJ, Basel DG, Volkman BF, Smith BC, Lomberk G, Zimmermann MT, Urrutia R) Orphanet J Rare Dis 2021 Feb 05;16(1):66 PMID: 33546721 PMCID: PMC7866879 Scopus ID: 2-s2.0-85100579633 02/07/2021
• Evolution of fold switching in a metamorphic protein. (Dishman AF, Tyler RC, Fox JC, Kleist AB, Prehoda KE, Babu MM, Peterson FC, Volkman BF) Science 2021 Jan 01;371(6524):86-90 PMID: 33384377 PMCID: PMC8017559 Scopus ID: 2-s2.0-85099153095 01/02/2021
• Natural and engineered chemokine (C-X-C motif) receptor 4 agonists prevent acute respiratory distress syndrome after lung ischemia–reperfusion injury and hemorrhage (Babu FS, Liang X, Enten GA, DeSantis AJ, Volkman BF, Gao X, Majetschak M) Scientific Reports 1 December 2020;10(1) Scopus ID: 2-s2.0-85087690704 12/01/2020
• Specific binding-induced modulation of the XCL1 metamorphic equilibrium. (Dishman AF, Peterson FC, Volkman BF) Biopolymers 2021 Oct;112(10):e23402 PMID: 32986858 PMCID: PMC8004533 Scopus ID: 2-s2.0-85091608507 09/29/2020
• The chemokine X-factor: Structure-function analysis of the CXC motif at CXCR4 and ACKR3. (Wedemeyer MJ, Mahn SA, Getschman AE, Crawford KS, Peterson FC, Marchese A, McCorvy JD, Volkman BF) J Biol Chem 2020 Oct 02;295(40):13927-13939 PMID: 32788219 PMCID: PMC7535910 Scopus ID: 2-s2.0-85092681956 08/14/2020
• Comparative modeling and docking of chemokine-receptor interactions with Rosetta (Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF) Biochemical and Biophysical Research Communications 23 July 2020;528(2):389-397 Scopus ID: 2-s2.0-85077616577 07/23/2020
• Natural and engineered chemokine (C-X-C motif) receptor 4 agonists prevent acute respiratory distress syndrome after lung ischemia-reperfusion injury and hemorrhage. (Babu FS, Liang X, Enten GA, DeSantis AJ, Volkman BF, Gao X, Majetschak M) Sci Rep 2020 Jul 09;10(1):11359 PMID: 32647374 PMCID: PMC7347544 Scopus ID: 2-s2.0-85087690704 07/11/2020
• Age-related increase of kynurenine enhances miR29b-1-5p to decrease both CXCL12 signaling and the epigenetic enzyme Hdac3 in bone marrow stromal cells (Elmansi AM, Hussein KA, Herrero SM, Periyasamy-Thandavan S, Aguilar-Pérez A, Kondrikova G, Kondrikov D, Eisa NH, Pierce JL, Kaiser H, Ding KH, Walker AL, Jiang X, Bollag WB, Elsalanty M, Zhong Q, Shi Xm, Su Y, Johnson M, Hunter M, Reitman C, Volkman BF, Hamrick MW, Isales CM, Fulzele S, McGee-Lawrence ME, Hill WD) Bone Reports June 2020;12 Scopus ID: 2-s2.0-85084158144 06/01/2020
• Chemokine CCL28 Is a Potent Therapeutic Agent for Oropharyngeal Candidiasis. (He J, Thomas MA, de Anda J, Lee MW, Van Why E, Simpson P, Wong GCL, Grayson MH, Volkman BF, Huppler AR) Antimicrob Agents Chemother 2020 Jul 22;64(8) PMID: 32423961 PMCID: PMC7526824 Scopus ID: 2-s2.0-85088608725 05/20/2020
• Age-related increase of kynurenine enhances miR29b-1-5p to decrease both CXCL12 signaling and the epigenetic enzyme Hdac3 in bone marrow stromal cells. (Elmansi AM, Hussein KA, Herrero SM, Periyasamy-Thandavan S, Aguilar-Pérez A, Kondrikova G, Kondrikov D, Eisa NH, Pierce JL, Kaiser H, Ding KH, Walker AL, Jiang X, Bollag WB, Elsalanty M, Zhong Q, Shi XM, Su Y, Johnson M, Hunter M, Reitman C, Volkman BF, Hamrick MW, Isales CM, Fulzele S, McGee-Lawrence ME, Hill WD) Bone Rep 2020 Jun;12:100270 PMID: 32395570 PMCID: PMC7210406 05/13/2020
• Switchable Membrane Remodeling and Antifungal Defense by Metamorphic Chemokine XCL1. (Dishman AF, Lee MW, de Anda J, Lee EY, He J, Huppler AR, Wong GCL, Volkman BF) ACS Infect Dis 2020 May 08;6(5):1204-1213 PMID: 32243126 PMCID: PMC7258946 Scopus ID: 2-s2.0-85084720920 04/04/2020
• Structural Features of an Extended C-Terminal Tail Modulate the Function of the Chemokine CCL21. (Moussouras NA, Hjortø GM, Peterson FC, Szpakowska M, Chevigné A, Rosenkilde MM, Volkman BF, Dwinell MB) Biochemistry 2020 Apr 07;59(13):1338-1350 PMID: 32182428 PMCID: PMC7307649 Scopus ID: 2-s2.0-85083041593 03/18/2020
• Characterization of heteromeric complexes between chemokine (C-X-C motif) receptor 4 and α₁-adrenergic receptors utilizing intermolecular bioluminescence resonance energy transfer assays. (Gao X, Enten GA, DeSantis AJ, Volkman BF, Gaponenko V, Majetschak M) Biochem Biophys Res Commun 2020 Jul 23;528(2):368-375 PMID: 32085899 PMCID: PMC7937191 Scopus ID: 2-s2.0-85079757912 02/23/2020
• A negative-feedback loop maintains optimal chemokine concentrations for directional cell migration. (Lau S, Feitzinger A, Venkiteswaran G, Wang J, Lewellis SW, Koplinski CA, Peterson FC, Volkman BF, Meier-Schellersheim M, Knaut H) Nat Cell Biol 2020 Mar;22(3):266-273 PMID: 32042179 PMCID: PMC7809593 Scopus ID: 2-s2.0-85079456516 02/12/2020
• Comparative modeling and docking of chemokine-receptor interactions with Rosetta. (Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF) Biochem Biophys Res Commun 2020 Jul 23;528(2):389-397 PMID: 31924303 PMCID: PMC7295663 Scopus ID: 2-s2.0-85077616577 01/12/2020
• Dynamic control of plant water use using designed ABA receptor agonists. (Vaidya AS, Helander JDM, Peterson FC, Elzinga D, Dejonghe W, Kaundal A, Park SY, Xing Z, Mega R, Takeuchi J, Khanderahoo B, Bishay S, Volkman BF, Todoroki Y, Okamoto M, Cutler SR) Science 2019 Oct 25;366(6464) PMID: 31649167 Scopus ID: 2-s2.0-85074062657 10/28/2019
• Structure-function guided modeling of chemokine-GPCR specificity for the chemokine XCL1 and its receptor XCR1. (Fox JC, Thomas MA, Dishman AF, Larsen O, Nakayama T, Yoshie O, Rosenkilde MM, Volkman BF) Sci Signal 2019 Sep 03;12(597) PMID: 31481523 PMCID: PMC6733756 Scopus ID: 2-s2.0-85071750983 09/05/2019
• What doesn't kill you makes you stranger: Dipeptidyl peptidase-4 (CD26) proteolysis differentially modulates the activity of many peptide hormones and cytokines generating novel cryptic bioactive ligands. (Elmansi AM, Awad ME, Eisa NH, Kondrikov D, Hussein KA, Aguilar-Pérez A, Herberg S, Periyasamy-Thandavan S, Fulzele S, Hamrick MW, McGee-Lawrence ME, Isales CM, Volkman BF, Hill WD) Pharmacol Ther 2019 Jun;198:90-108 PMID: 30759373 PMCID: PMC7883480 Scopus ID: 2-s2.0-85062148942 02/14/2019
• Solution NMR spectroscopy of GPCRs: Residue-specific labeling strategies with a focus on ¹³C-methyl methionine labeling of the atypical chemokine receptor ACKR3. (Kleist AB, Peterson F, Tyler RC, Gustavsson M, Handel TM, Volkman BF) Methods Cell Biol 2019;149:259-288 PMID: 30616824 PMCID: PMC6941889 Scopus ID: 2-s2.0-85056642454 01/09/2019
• Modeling the complete chemokine-receptor interaction. (Wedemeyer MJ, Mueller BK, Bender BJ, Meiler J, Volkman BF) Methods Cell Biol 2019;149:289-314 PMID: 30616825 PMCID: PMC6790067 Scopus ID: 2-s2.0-85055739819 01/09/2019
• Biased antagonism of CXCR4 avoids antagonist tolerance. (Hitchinson B, Eby JM, Gao X, Guite-Vinet F, Ziarek JJ, Abdelkarim H, Lee Y, Okamoto Y, Shikano S, Majetschak M, Heveker N, Volkman BF, Tarasova NI, Gaponenko V) Sci Signal 2018 Oct 16;11(552) PMID: 30327409 PMCID: PMC6422681 Scopus ID: 2-s2.0-85055022783 10/18/2018
• Partial agonist activity of α1-adrenergic receptor antagonists for chemokine (C-X-C motif) receptor 4 and atypical chemokine receptor 3. (Gao X, Abdelkarim H, Albee LJ, Volkman BF, Gaponenko V, Majetschak M) PLoS One 2018;13(9):e0204041 PMID: 30248140 PMCID: PMC6152952 Scopus ID: 2-s2.0-85053768829 09/25/2018
• Mutational analysis of CCL20 reveals flexibility of N-terminal amino acid composition and length. (Riutta SJ, Larsen O, Getschman AE, Rosenkilde MM, Hwang ST, Volkman BF) J Leukoc Biol 2018 Aug;104(2):423-434 PMID: 30114340 Scopus ID: 2-s2.0-85050596102 08/17/2018
• The Solution Structure of CCL28 Reveals Structural Lability that Does Not Constrain Antifungal Activity. (Thomas MA, He J, Peterson FC, Huppler AR, Volkman BF) J Mol Biol 2018 Sep 14;430(18 Pt B):3266-3282 PMID: 29913161 PMCID: PMC6103841 Scopus ID: 2-s2.0-85049041059 06/19/2018
• Decoding the chemotactic signal. (Thomas MA, Kleist AB, Volkman BF) J Leukoc Biol 2018 Aug;104(2):359-374 PMID: 29873835 PMCID: PMC6099250 Scopus ID: 2-s2.0-85050644511 06/07/2018
• Unfolding the Mysteries of Protein Metamorphosis. (Dishman AF, Volkman BF) ACS Chem Biol 2018 Jun 15;13(6):1438-1446 PMID: 29787234 PMCID: PMC6007232 Scopus ID: 2-s2.0-85047568358 05/23/2018
• Asymmetrical ligand-induced cross-regulation of chemokine (C-X-C motif) receptor 4 by α₁-adrenergic receptors at the heteromeric receptor complex. (Gao X, Albee LJ, Volkman BF, Gaponenko V, Majetschak M) Sci Rep 2018 Feb 09;8(1):2730 PMID: 29426850 PMCID: PMC5807542 Scopus ID: 2-s2.0-85053764631 02/11/2018
• Identification and functional characterization of arginine vasopressin receptor 1A : atypical chemokine receptor 3 heteromers in vascular smooth muscle. (Albee LJ, LaPorte HM, Gao X, Eby JM, Cheng YH, Nevins AM, Volkman BF, Gaponenko V, Majetschak M) Open Biol 2018 Jan;8(1) PMID: 29386406 PMCID: PMC5795052 Scopus ID: 2-s2.0-85053785091 02/02/2018
• Different contributions of chemokine N-terminal features attest to a different ligand binding mode and a bias towards activation of ACKR3/CXCR7 compared with CXCR4 and CXCR3. (Szpakowska M, Nevins AM, Meyrath M, Rhainds D, D'huys T, Guité-Vinet F, Dupuis N, Gauthier PA, Counson M, Kleist A, St-Onge G, Hanson J, Schols D, Volkman BF, Heveker N, Chevigné A) Br J Pharmacol 2018 May;175(9):1419-1438 PMID: 29272550 PMCID: PMC5900987 Scopus ID: 2-s2.0-85044208341 12/23/2017
• Development and Validation of 2D Difference Intensity Analysis for Chemical Library Screening by Protein-Detected NMR Spectroscopy. (Egner JM, Jensen DR, Olp MD, Kennedy NW, Volkman BF, Peterson FC, Smith BC, Hill RB) Chembiochem 2018 Mar 02;19(5):448-458 PMID: 29239081 PMCID: PMC5844354 Scopus ID: 2-s2.0-85041064927 12/15/2017
• Effects of cognate, non-cognate and synthetic CXCR4 and ACKR3 ligands on human lung endothelial cell barrier function. (Cheng YH, Eby JM, LaPorte HM, Volkman BF, Majetschak M) PLoS One 2017;12(11):e0187949 PMID: 29125867 PMCID: PMC5681266 Scopus ID: 2-s2.0-85033588755 11/11/2017
• Protein engineering of the chemokine CCL20 prevents psoriasiform dermatitis in an IL-23-dependent murine model. (Getschman AE, Imai Y, Larsen O, Peterson FC, Wu X, Rosenkilde MM, Hwang ST, Volkman BF) Proc Natl Acad Sci U S A 2017 Nov 21;114(47):12460-12465 PMID: 29109267 PMCID: PMC5703275 Scopus ID: 2-s2.0-85034572094 11/08/2017
• A Rationally Designed Agonist Defines Subfamily IIIA Abscisic Acid Receptors As Critical Targets for Manipulating Transpiration. (Vaidya AS, Peterson FC, Yarmolinsky D, Merilo E, Verstraeten I, Park SY, Elzinga D, Kaundal A, Helander J, Lozano-Juste J, Otani M, Wu K, Jensen DR, Kollist H, Volkman BF, Cutler SR) ACS Chem Biol 2017 Nov 17;12(11):2842-2848 PMID: 28949512 Scopus ID: 2-s2.0-85034653681 09/28/2017
• Differences in Sulfotyrosine Binding amongst CXCR1 and CXCR2 Chemokine Ligands. (Moussouras NA, Getschman AE, Lackner ER, Veldkamp CT, Dwinell MB, Volkman BF) Int J Mol Sci 2017 Sep 03;18(9) PMID: 28869519 PMCID: PMC5618543 Scopus ID: 2-s2.0-85028764300 09/05/2017
• α₁-Adrenergic Receptors Function Within Hetero-Oligomeric Complexes With Atypical Chemokine Receptor 3 and Chemokine (C-X-C motif) Receptor 4 in Vascular Smooth Muscle Cells. (Albee LJ, Eby JM, Tripathi A, LaPorte HM, Gao X, Volkman BF, Gaponenko V, Majetschak M) J Am Heart Assoc 2017 Aug 17;6(8) PMID: 28862946 PMCID: PMC5586474 Scopus ID: 2-s2.0-85030676850 09/02/2017
• CCR7 Sulfotyrosine Enhances CCL21 Binding. (Phillips AJ, Taleski D, Koplinski CA, Getschman AE, Moussouras NA, Richard AM, Peterson FC, Dwinell MB, Volkman BF, Payne RJ, Veldkamp CT) Int J Mol Sci 2017 Aug 25;18(9) PMID: 28841151 PMCID: PMC5618506 Scopus ID: 2-s2.0-85028343200 08/26/2017
• Structure and Dimerization of IreB, a Negative Regulator of Cephalosporin Resistance in Enterococcus faecalis. (Hall CL, Lytle BL, Jensen D, Hoff JS, Peterson FC, Volkman BF, Kristich CJ) J Mol Biol 2017 Jul 21;429(15):2324-2336 PMID: 28551334 PMCID: PMC5527686 Scopus ID: 2-s2.0-85020666072 05/30/2017
• Functional and structural consequences of chemokine (C-X-C motif) receptor 4 activation with cognate and non-cognate agonists. (Eby JM, Abdelkarim H, Albee LJ, Tripathi A, Gao X, Volkman BF, Gaponenko V, Majetschak M) Mol Cell Biochem 2017 Oct;434(1-2):143-151 PMID: 28455789 PMCID: PMC5660673 Scopus ID: 2-s2.0-85018295327 04/30/2017
• Structural basis for chemokine recognition by a G protein-coupled receptor and implications for receptor activation. (Ziarek JJ, Kleist AB, London N, Raveh B, Montpas N, Bonneterre J, St-Onge G, DiCosmo-Ponticello CJ, Koplinski CA, Roy I, Stephens B, Thelen S, Veldkamp CT, Coffman FD, Cohen MC, Dwinell MB, Thelen M, Peterson FC, Heveker N, Volkman BF) Sci Signal 2017 Mar 21;10(471) PMID: 28325822 PMCID: PMC5648539 Scopus ID: 2-s2.0-85016334108 03/23/2017
• NMR Structure of the C-Terminal Transmembrane Domain of the HDL Receptor, SR-BI, and a Functionally Relevant Leucine Zipper Motif. (Chadwick AC, Jensen DR, Hanson PJ, Lange PT, Proudfoot SC, Peterson FC, Volkman BF, Sahoo D) Structure 2017 Mar 07;25(3):446-457 PMID: 28162952 PMCID: PMC5575897 Scopus ID: 2-s2.0-85011284406 02/07/2017
• Exploiting agonist biased signaling of chemokines to target cancer. (Roy I, Getschman AE, Volkman BF, Dwinell MB) Mol Carcinog 2017 Mar;56(3):804-813 PMID: 27648825 PMCID: PMC5479419 Scopus ID: 2-s2.0-84994851814 09/21/2016
• Crystallographic Structure of Truncated CCL21 and the Putative Sulfotyrosine-Binding Site. (Smith EW, Lewandowski EM, Moussouras NA, Kroeck KG, Volkman BF, Veldkamp CT, Chen Y) Biochemistry 2016 Oct 11;55(40):5746-5753 PMID: 27617343 PMCID: PMC5498006 Scopus ID: 2-s2.0-84991072808 09/13/2016
• Evolution of a Protein Interaction Domain Family by Tuning Conformational Flexibility. (Whitney DS, Volkman BF, Prehoda KE) J Am Chem Soc 2016 Nov 23;138(46):15150-15156 PMID: 27502157 PMCID: PMC5661941 Scopus ID: 2-s2.0-84999106958 08/10/2016
• Tyrosine-sulfated V2 peptides inhibit HIV-1 infection via coreceptor mimicry. (Cimbro R, Peterson FC, Liu Q, Guzzo C, Zhang P, Miao H, Van Ryk D, Ambroggio X, Hurt DE, De Gioia L, Volkman BF, Dolan MA, Lusso P) EBioMedicine 2016 Aug;10:45-54 PMID: 27389109 PMCID: PMC5006643 Scopus ID: 2-s2.0-85028268790 07/09/2016
• New Insights into Mechanisms and Functions of Chemokine (C-X-C Motif) Receptor 4 Heteromerization in Vascular Smooth Muscle. (Evans AE, Tripathi A, LaPorte HM, Brueggemann LI, Singh AK, Albee LJ, Byron KL, Tarasova NI, Volkman BF, Cho TY, Gaponenko V, Majetschak M) Int J Mol Sci 2016 Jun 20;17(5) PMID: 27331810 PMCID: PMC4926503 Scopus ID: 2-s2.0-85015592466 06/23/2016
• A Requirement for Metamorphic Interconversion in the Antimicrobial Activity of Chemokine XCL1. (Nevins AM, Subramanian A, Tapia JL, Delgado DP, Tyler RC, Jensen DR, Ouellette AJ, Volkman BF) Biochemistry 2016 Jul 12;55(27):3784-93 PMID: 27305837 PMCID: PMC6956654 Scopus ID: 2-s2.0-84978370474 06/17/2016
• New paradigms in chemokine receptor signal transduction: Moving beyond the two-site model. (Kleist AB, Getschman AE, Ziarek JJ, Nevins AM, Gauthier PA, Chevigné A, Szpakowska M, Volkman BF) Biochem Pharmacol 2016 Aug 15;114:53-68 PMID: 27106080 PMCID: PMC5145291 Scopus ID: 2-s2.0-84975744621 04/24/2016
• Structure-Based Identification of Novel Ligands Targeting Multiple Sites within a Chemokine-G-Protein-Coupled-Receptor Interface. (Smith EW, Nevins AM, Qiao Z, Liu Y, Getschman AE, Vankayala SL, Kemp MT, Peterson FC, Li R, Volkman BF, Chen Y) J Med Chem 2016 May 12;59(9):4342-51 PMID: 27058821 PMCID: PMC5600900 Scopus ID: 2-s2.0-84969506287 04/09/2016
• Correction to Binding of Crumbs to the Par-6 CRIB-PDZ Module Is Regulated by Cdc42. (Whitney DS, Peterson FC, Kittell AW, Egner JM, Prehoda KE, Volkman BF) Biochemistry 2016 Apr 05;55(13):2063 PMID: 27012924 PMCID: PMC5531046 03/26/2016
• Production of Recombinant Chemokines and Validation of Refolding. (Veldkamp CT, Koplinski CA, Jensen DR, Peterson FC, Smits KM, Smith BL, Johnson SK, Lettieri C, Buchholz WG, Solheim JC, Volkman BF) Methods Enzymol 2016;570:539-65 PMID: 26921961 PMCID: PMC4811038 Scopus ID: 2-s2.0-84959017982 02/29/2016
• Binding of Crumbs to the Par-6 CRIB-PDZ Module Is Regulated by Cdc42. (Whitney DS, Peterson FC, Kittell AW, Egner JM, Prehoda KE, Volkman BF) Biochemistry 2016 Mar 15;55(10):1455-61 PMID: 26894406 PMCID: PMC5433836 Scopus ID: 2-s2.0-84961825293 02/20/2016
• Examination of Glycosaminoglycan Binding Sites on the XCL1 Dimer. (Fox JC, Tyler RC, Peterson FC, Dyer DP, Zhang F, Linhardt RJ, Handel TM, Volkman BF) Biochemistry 2016 Mar 01;55(8):1214-25 PMID: 26836755 PMCID: PMC4775286 Scopus ID: 2-s2.0-84959421606 02/03/2016
• Correction: Evolution of an ancient protein function involved in organized multicellularity in animals. (Anderson DP, Whitney DS, Hanson-Smith V, Woznica A, Campodonico-Burnett W, Volkman BF, King N, Thornton JW, Prehoda KE) Elife 2016 Jan 21;5:e14311 PMID: 26790885 PMCID: PMC4739758 01/23/2016
• Evolution of an ancient protein function involved in organized multicellularity in animals. (Anderson DP, Whitney DS, Hanson-Smith V, Woznica A, Campodonico-Burnett W, Volkman BF, King N, Thornton JW, Prehoda KE) Elife 2016 Jan 07;5:e10147 PMID: 26740169 PMCID: PMC4718807 Scopus ID: 2-s2.0-84956891086 01/08/2016
• Polysialylation controls dendritic cell trafficking by regulating chemokine recognition. (Kiermaier E, Moussion C, Veldkamp CT, Gerardy-Schahn R, de Vries I, Williams LG, Chaffee GR, Phillips AJ, Freiberger F, Imre R, Taleski D, Payne RJ, Braun A, Förster R, Mechtler K, Mühlenhoff M, Volkman BF, Sixt M) Science 2016 Jan 08;351(6269):186-90 PMID: 26657283 PMCID: PMC5583642 Scopus ID: 2-s2.0-84955091858 12/15/2015
• The dependence of chemokine-glycosaminoglycan interactions on chemokine oligomerization. (Dyer DP, Salanga CL, Volkman BF, Kawamura T, Handel TM) Glycobiology 2016 Mar;26(3):312-26 PMID: 26582609 PMCID: PMC4736540 Scopus ID: 2-s2.0-84959429965 11/20/2015
• The association and aggregation of the metamorphic chemokine lymphotactin with fondaparinux: from nm molecular complexes to μm molecular assemblies. (Harvey SR, MacPhee CE, Volkman BF, Barran PE) Chem Commun (Camb) 2016 Jan 07;52(2):394-7 PMID: 26523295 Scopus ID: 2-s2.0-84983203520 11/03/2015
• Pancreatic Cancer Cell Migration and Metastasis Is Regulated by Chemokine-Biased Agonism and Bioenergetic Signaling. (Roy I, McAllister DM, Gorse E, Dixon K, Piper CT, Zimmerman NP, Getschman AE, Tsai S, Engle DD, Evans DB, Volkman BF, Kalyanaraman B, Dwinell MB) Cancer Res 2015 Sep 01;75(17):3529-42 PMID: 26330165 PMCID: PMC4560104 Scopus ID: 2-s2.0-84942898695 09/04/2015
• Engineering Metamorphic Chemokine Lymphotactin/XCL1 into the GAG-Binding, HIV-Inhibitory Dimer Conformation. (Fox JC, Tyler RC, Guzzo C, Tuinstra RL, Peterson FC, Lusso P, Volkman BF) ACS Chem Biol 2015 Nov 20;10(11):2580-8 PMID: 26302421 PMCID: PMC5028202 Scopus ID: 2-s2.0-84947933465 08/25/2015
• Cytokines and growth factors cross-link heparan sulfate. (Migliorini E, Thakar D, Kühnle J, Sadir R, Dyer DP, Li Y, Sun C, Volkman BF, Handel TM, Coche-Guerente L, Fernig DG, Lortat-Jacob H, Richter RP) Open Biol 2015 Aug;5(8) PMID: 26269427 PMCID: PMC4554917 Scopus ID: 2-s2.0-84942437037 08/14/2015
• Some (dis)assembly required: partial unfolding in the Par-6 allosteric switch. (Whitney DS, Volkman BF) Biophys Rev 2015 Jun 01;7(2):183-190 PMID: 26236405 PMCID: PMC4519835 08/04/2015
• Interplay of Electrostatics and Hydrophobic Effects in the Metamorphic Protein Human Lymphotactin. (Korkmaz EN, Volkman BF, Cui Q) J Phys Chem B 2015 Jul 30;119(30):9547-58 PMID: 26134347 Scopus ID: 2-s2.0-84938282399 07/03/2015
• Structural Determinants for the Selective Anti-HIV-1 Activity of the All-β Alternative Conformer of XCL1. (Guzzo C, Fox JC, Miao H, Volkman BF, Lusso P) J Virol 2015 Sep;89(17):9061-7 PMID: 26085164 PMCID: PMC4524057 Scopus ID: 2-s2.0-84938918358 06/19/2015
• The aspartate-less receiver (ALR) domains: distribution, structure and function. (Maule AF, Wright DP, Weiner JJ, Han L, Peterson FC, Volkman BF, Silvaggi NR, Ulijasz AT) PLoS Pathog 2015 Apr;11(4):e1004795 PMID: 25875291 PMCID: PMC4395418 Scopus ID: 2-s2.0-84929484388 04/16/2015
• Bacterial expression of the phosphodiester-binding site of the cation-independent mannose 6-phosphate receptor for crystallographic and NMR studies. (Olson LJ, Jensen DR, Volkman BF, Kim JJ, Peterson FC, Gundry RL, Dahms NM) Protein Expr Purif 2015 Jul;111:91-7 PMID: 25863146 PMCID: PMC4417374 Scopus ID: 2-s2.0-84927727743 04/12/2015
• Expression platforms for producing eukaryotic proteins: a comparison of E. coli cell-based and wheat germ cell-free synthesis, affinity and solubility tags, and cloning strategies. (Aceti DJ, Bingman CA, Wrobel RL, Frederick RO, Makino S, Nichols KW, Sahu SC, Bergeman LF, Blommel PG, Cornilescu CC, Gromek KA, Seder KD, Hwang S, Primm JG, Sabat G, Vojtik FC, Volkman BF, Zolnai Z, Phillips GN Jr, Markley JL, Fox BG) J Struct Funct Genomics 2015 Jun;16(2):67-80 PMID: 25854603 PMCID: PMC4430420 Scopus ID: 2-s2.0-84937761852 04/10/2015
• Electron capture dissociation and drift tube ion mobility-mass spectrometry coupled with site directed mutations provide insights into the conformational diversity of a metamorphic protein. (Harvey SR, Porrini M, Tyler RC, MacPhee CE, Volkman BF, Barran PE) Phys Chem Chem Phys 2015 Apr 28;17(16):10538-50 PMID: 25805055 Scopus ID: 2-s2.0-84928027570 03/26/2015
• Heteromerization of chemokine (C-X-C motif) receptor 4 with α1A/B-adrenergic receptors controls α1-adrenergic receptor function. (Tripathi A, Vana PG, Chavan TS, Brueggemann LI, Byron KL, Tarasova NI, Volkman BF, Gaponenko V, Majetschak M) Proc Natl Acad Sci U S A 2015 Mar 31;112(13):E1659-68 PMID: 25775528 PMCID: PMC4386352 Scopus ID: 2-s2.0-84961289810 03/17/2015
• Agrochemical control of plant water use using engineered abscisic acid receptors. (Park SY, Peterson FC, Mosquna A, Yao J, Volkman BF, Cutler SR) Nature 2015 Apr 23;520(7548):545-8 PMID: 25652827 Scopus ID: 2-s2.0-84928473532 02/06/2015
• Structure-function analysis of CCL28 in the development of post-viral asthma. (Thomas MA, Buelow BJ, Nevins AM, Jones SE, Peterson FC, Gundry RL, Grayson MH, Volkman BF) J Biol Chem 2015 Feb 13;290(7):4528-36 PMID: 25556652 PMCID: PMC4326855 Scopus ID: 2-s2.0-84922787785 01/06/2015
• Structural and agonist properties of XCL2, the other member of the C-chemokine subfamily. (Fox JC, Nakayama T, Tyler RC, Sander TL, Yoshie O, Volkman BF) Cytokine 2015 Feb;71(2):302-11 PMID: 25497737 PMCID: PMC4297508 Scopus ID: 2-s2.0-84916887047 12/17/2014
• Expression, purification and reconstitution of the C-terminal transmembrane domain of scavenger receptor BI into detergent micelles for NMR analysis. (Chadwick AC, Jensen DR, Peterson FC, Volkman BF, Sahoo D) Protein Expr Purif 2015 Mar;107:35-42 PMID: 25461971 PMCID: PMC4270826 Scopus ID: 2-s2.0-84916910193 12/03/2014
• Structural analysis of a novel small molecule ligand bound to the CXCL12 chemokine. (Smith EW, Liu Y, Getschman AE, Peterson FC, Ziarek JJ, Li R, Volkman BF, Chen Y) J Med Chem 2014 Nov 26;57(22):9693-9 PMID: 25356720 PMCID: PMC4255719 Scopus ID: 2-s2.0-84913593689 10/31/2014
• Dissecting the dynamic conformations of the metamorphic protein lymphotactin. (Harvey SR, Porrini M, Konijnenberg A, Clarke DJ, Tyler RC, Langridge-Smith PR, MacPhee CE, Volkman BF, Barran PE) J Phys Chem B 2014 Oct 30;118(43):12348-59 PMID: 25259958 Scopus ID: 2-s2.0-84908577548 09/27/2014
• Chemokine (C-X-C motif) receptor 4 and atypical chemokine receptor 3 regulate vascular α₁-adrenergic receptor function. (Bach HH 4th, Wong YM, Tripathi A, Nevins AM, Gamelli RL, Volkman BF, Byron KL, Majetschak M) Mol Med 2014 Oct 13;20(1):435-47 PMID: 25032954 PMCID: PMC4212013 07/18/2014
• Chemokine cooperativity is caused by competitive glycosaminoglycan binding. (Verkaar F, van Offenbeek J, van der Lee MMC, van Lith LHCJ, Watts AO, Rops ALWMM, Aguilar DC, Ziarek JJ, van der Vlag J, Handel TM, Volkman BF, Proudfoot AEI, Vischer HF, Zaman GJR, Smit MJ) J Immunol 2014 Apr 15;192(8):3908-3914 PMID: 24639348 PMCID: PMC4198333 Scopus ID: 2-s2.0-84898636375 03/19/2014
• Combine and conquer: surfactants, solvents, and chaotropes for robust mass spectrometry based analyses of membrane proteins. (Waas M, Bhattacharya S, Chuppa S, Wu X, Jensen DR, Omasits U, Wollscheid B, Volkman BF, Noon KR, Gundry RL) Anal Chem 2014 Feb 04;86(3):1551-9 PMID: 24392666 PMCID: PMC4007983 Scopus ID: 2-s2.0-84893556785 01/08/2014
• The CD8-derived chemokine XCL1/lymphotactin is a conformation-dependent, broad-spectrum inhibitor of HIV-1. (Guzzo C, Fox J, Lin Y, Miao H, Cimbro R, Volkman BF, Fauci AS, Lusso P) PLoS Pathog 2013;9(12):e1003852 PMID: 24385911 PMCID: PMC3873461 Scopus ID: 2-s2.0-84892861296 01/05/2014
• CXC chemokine receptor 4 signaling upon co-activation with stromal cell-derived factor-1α and ubiquitin. (Tripathi A, Davis JD, Staren DM, Volkman BF, Majetschak M) Cytokine 2014 Feb;65(2):121-5 PMID: 24373940 PMCID: PMC4615604 Scopus ID: 2-s2.0-84892483373 01/01/2014
• Chemokines in colitis: microRNA control. (Roy I, Veldkamp CT, Volkman BF, Dwinell MB) Gut 2014 Aug;63(8):1202-4 PMID: 24142964 PMCID: PMC4608425 Scopus ID: 2-s2.0-84904047100 10/22/2013
• Identification of the major ubiquitin-binding domain of the Pseudomonas aeruginosa ExoU A2 phospholipase. (Anderson DM, Feix JB, Monroe AL, Peterson FC, Volkman BF, Haas AL, Frank DW) J Biol Chem 2013 Sep 13;288(37):26741-52 PMID: 23908356 PMCID: PMC3772220 Scopus ID: 2-s2.0-84884182244 08/03/2013
• Activation of dimeric ABA receptors elicits guard cell closure, ABA-regulated gene expression, and drought tolerance. (Okamoto M, Peterson FC, Defries A, Park SY, Endo A, Nambara E, Volkman BF, Cutler SR) Proc Natl Acad Sci U S A 2013 Jul 16;110(29):12132-7 PMID: 23818638 PMCID: PMC3718107 Scopus ID: 2-s2.0-84880371555 07/03/2013
• Sulfopeptide probes of the CXCR4/CXCL12 interface reveal oligomer-specific contacts and chemokine allostery. (Ziarek JJ, Getschman AE, Butler SJ, Taleski D, Stephens B, Kufareva I, Handel TM, Payne RJ, Volkman BF) ACS Chem Biol 2013 Sep 20;8(9):1955-63 PMID: 23802178 PMCID: PMC3783652 Scopus ID: 2-s2.0-84884609886 06/27/2013
• Allosteric activation of the Par-6 PDZ via a partial unfolding transition. (Whitney DS, Peterson FC, Kovrigin EL, Volkman BF) J Am Chem Soc 2013 Jun 26;135(25):9377-83 PMID: 23705660 PMCID: PMC3736553 Scopus ID: 2-s2.0-84879539055 05/28/2013
• Modulation of the CXC chemokine receptor 4 agonist activity of ubiquitin through C-terminal protein modification. (Tripathi A, Saini V, Marchese A, Volkman BF, Tang WJ, Majetschak M) Biochemistry 2013 Jun 18;52(24):4184-92 PMID: 23697661 PMCID: PMC4113718 Scopus ID: 2-s2.0-84879247089 05/24/2013
• Fragment-based optimization of small molecule CXCL12 inhibitors for antagonizing the CXCL12/CXCR4 interaction. (Ziarek JJ, Liu Y, Smith E, Zhang G, Peterson FC, Chen J, Yu Y, Chen Y, Volkman BF, Li R) Curr Top Med Chem 2012;12(24):2727-40 PMID: 23368099 PMCID: PMC3839847 Scopus ID: 2-s2.0-84883719150 02/02/2013
• NMR in the Analysis of Functional Chemokine Interactions and Drug Discovery. (Ziarek JJ, Volkman BF) Drug Discov Today Technol 2012;9(4):e293-e299 PMID: 23166561 PMCID: PMC3499625 11/21/2012
• Heparin oligosaccharides inhibit chemokine (CXC motif) ligand 12 (CXCL12) cardioprotection by binding orthogonal to the dimerization interface, promoting oligomerization, and competing with the chemokine (CXC motif) receptor 4 (CXCR4) N terminus. (Ziarek JJ, Veldkamp CT, Zhang F, Murray NJ, Kartz GA, Liang X, Su J, Baker JE, Linhardt RJ, Volkman BF) J Biol Chem 2013 Jan 04;288(1):737-46 PMID: 23148226 PMCID: PMC3537072 Scopus ID: 2-s2.0-84872066189 11/14/2012
• Electrostatic optimization of the conformational energy landscape in a metamorphic protein. (Tyler RC, Wieting JC, Peterson FC, Volkman BF) Biochemistry 2012 Nov 13;51(45):9067-75 PMID: 23102260 PMCID: PMC3567213 Scopus ID: 2-s2.0-84869078793 10/30/2012
• Tyrosine residues mediate fibril formation in a dynamic light chain dimer interface (The Journal of Biological Chemistry (2012) 287 (27997-28006)) (DiCostanzo AC, Thompson JR, Peterson FC, Volkman BF, Ramirez-Alvarado M) Journal of Biological Chemistry 12 October 2012;287(42):35541 Scopus ID: 2-s2.0-84867424933 10/12/2012
• Unfolding of the C-terminal domain of the J-protein Zuo1 releases autoinhibition and activates Pdr1-dependent transcription. (Ducett JK, Peterson FC, Hoover LA, Prunuske AJ, Volkman BF, Craig EA) J Mol Biol 2013 Jan 09;425(1):19-31 PMID: 23036859 PMCID: PMC3534791 Scopus ID: 2-s2.0-84871801279 10/06/2012
• A locked, dimeric CXCL12 variant effectively inhibits pulmonary metastasis of CXCR4-expressing melanoma cells due to enhanced serum stability. (Takekoshi T, Ziarek JJ, Volkman BF, Hwang ST) Mol Cancer Ther 2012 Nov;11(11):2516-25 PMID: 22869557 PMCID: PMC3496366 Scopus ID: 2-s2.0-84869226562 08/08/2012
• E2-binding surface on Uba3 β-grasp domain undergoes a conformational transition. (Elgin ES, Sökmen N, Peterson FC, Volkman BF, Dağ C, Haas AL) Proteins 2012 Oct;80(10):2482-7 PMID: 22821745 Scopus ID: 2-s2.0-84865992374 07/24/2012
• Tyrosine residues mediate fibril formation in a dynamic light chain dimer interface. (DiCostanzo AC, Thompson JR, Peterson FC, Volkman BF, Ramirez-Alvarado M) J Biol Chem 2012 Aug 10;287(33):27997-8006 PMID: 22740699 PMCID: PMC3431636 Scopus ID: 2-s2.0-84865034948 06/29/2012
• Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4. (Mysinger MM, Weiss DR, Ziarek JJ, Gravel S, Doak AK, Karpiak J, Heveker N, Shoichet BK, Volkman BF) Proc Natl Acad Sci U S A 2012 Apr 03;109(14):5517-22 PMID: 22431600 PMCID: PMC3325704 Scopus ID: 2-s2.0-84859460667 03/21/2012
• Potent and selective activation of abscisic acid receptors in vivo by mutational stabilization of their agonist-bound conformation. (Mosquna A, Peterson FC, Park SY, Lozano-Juste J, Volkman BF, Cutler SR) Proc Natl Acad Sci U S A 2011 Dec 20;108(51):20838-43 PMID: 22139369 PMCID: PMC3251050 Scopus ID: 2-s2.0-84862932422 12/06/2011
• A conformational switch in the CRIB-PDZ module of Par-6. (Whitney DS, Peterson FC, Volkman BF) Structure 2011 Nov 09;19(11):1711-22 PMID: 22078569 PMCID: PMC3217198 Scopus ID: 2-s2.0-80855128793 11/15/2011
• Conversion of the enzyme guanylate kinase into a mitotic-spindle orienting protein by a single mutation that inhibits GMP-induced closing. (Johnston CA, Whitney DS, Volkman BF, Doe CQ, Prehoda KE) Proc Natl Acad Sci U S A 2011 Nov 01;108(44):E973-8 PMID: 21990344 PMCID: PMC3207680 10/13/2011
• Monomeric and dimeric CXCL12 inhibit metastasis through distinct CXCR4 interactions and signaling pathways. (Drury LJ, Ziarek JJ, Gravel S, Veldkamp CT, Takekoshi T, Hwang ST, Heveker N, Volkman BF, Dwinell MB) Proc Natl Acad Sci U S A 2011 Oct 25;108(43):17655-60 PMID: 21990345 PMCID: PMC3203819 Scopus ID: 2-s2.0-80055081893 10/13/2011
• Orphan macrodomain protein (human C6orf130) is an O-acyl-ADP-ribose deacylase: solution structure and catalytic properties. (Peterson FC, Chen D, Lytle BL, Rossi MN, Ahel I, Denu JM, Volkman BF) J Biol Chem 2011 Oct 14;286(41):35955-35965 PMID: 21849506 PMCID: PMC3195580 Scopus ID: 2-s2.0-80053928939 08/19/2011
• Native-state interconversion of a metamorphic protein requires global unfolding. (Tyler RC, Murray NJ, Peterson FC, Volkman BF) Biochemistry 2011 Aug 23;50(33):7077-9 PMID: 21776971 PMCID: PMC3160782 Scopus ID: 2-s2.0-80051739153 07/23/2011
• The CXC chemokine receptor 4 ligands ubiquitin and stromal cell-derived factor-1α function through distinct receptor interactions. (Saini V, Staren DM, Ziarek JJ, Nashaat ZN, Campbell EM, Volkman BF, Marchese A, Majetschak M) J Biol Chem 2011 Sep 23;286(38):33466-77 PMID: 21757744 PMCID: PMC3190899 Scopus ID: 2-s2.0-80052987287 07/16/2011
• Sulfotyrosine recognition as marker for druggable sites in the extracellular space. (Ziarek JJ, Heroux MS, Veldkamp CT, Peterson FC, Volkman BF) Int J Mol Sci 2011;12(6):3740-56 PMID: 21747703 PMCID: PMC3131587 Scopus ID: 2-s2.0-79959708032 07/13/2011
• Dynamic interchanging native states of lymphotactin examined by SNAPP-MS. (Sun Q, Tyler RC, Volkman BF, Julian RR) J Am Soc Mass Spectrom 2011 Mar;22(3):399-407 PMID: 21472559 PMCID: PMC3061006 Scopus ID: 2-s2.0-79951915697 04/08/2011
• Residues within a lipid-associated segment of the PECAM-1 cytoplasmic domain are susceptible to inducible, sequential phosphorylation. (Paddock C, Lytle BL, Peterson FC, Holyst T, Newman PJ, Volkman BF, Newman DK) Blood 2011 Jun 02;117(22):6012-23 PMID: 21464369 PMCID: PMC3112045 Scopus ID: 2-s2.0-79958011812 04/06/2011
• Binding site identification and structure determination of protein-ligand complexes by NMR a semiautomated approach. (Ziarek JJ, Peterson FC, Lytle BL, Volkman BF) Methods Enzymol 2011;493:241-75 PMID: 21371594 PMCID: PMC3635485 Scopus ID: 2-s2.0-79952366609 03/05/2011
• Oxidation of histidine residues in copper-zinc superoxide dismutase by bicarbonate-stimulated peroxidase and thiol oxidase activities: pulse EPR and NMR studies. (Chandran K, McCracken J, Peterson FC, Antholine WE, Volkman BF, Kalyanaraman B) Biochemistry 2010 Dec 21;49(50):10616-22 PMID: 21038859 PMCID: PMC3501376 Scopus ID: 2-s2.0-78650389551 11/03/2010
• Structural and functional insights into core ABA signaling. (Weiner JJ, Peterson FC, Volkman BF, Cutler SR) Curr Opin Plant Biol 2010 Oct;13(5):495-502 PMID: 20934900 PMCID: PMC2971662 Scopus ID: 2-s2.0-78049282841 10/12/2010
• Structural basis for selective activation of ABA receptors. (Peterson FC, Burgie ES, Park SY, Jensen DR, Weiner JJ, Bingman CA, Chang CE, Cutler SR, Phillips GN Jr, Volkman BF) Nat Struct Mol Biol 2010 Sep;17(9):1109-13 PMID: 20729860 PMCID: PMC2933299 Scopus ID: 2-s2.0-77956341748 08/24/2010
• Structural basis for recognition of phosphodiester-containing lysosomal enzymes by the cation-independent mannose 6-phosphate receptor. (Olson LJ, Peterson FC, Castonguay A, Bohnsack RN, Kudo M, Gotschall RR, Canfield WM, Volkman BF, Dahms NM) Proc Natl Acad Sci U S A 2010 Jul 13;107(28):12493-8 PMID: 20615935 PMCID: PMC2906551 Scopus ID: 2-s2.0-77955444897 07/10/2010
• A single mutation promotes amyloidogenicity through a highly promiscuous dimer interface. (Peterson FC, Baden EM, Owen BA, Volkman BF, Ramirez-Alvarado M) Structure 2010 May 12;18(5):563-70 PMID: 20462490 PMCID: PMC2872106 Scopus ID: 2-s2.0-77952604860 05/14/2010
• Targeting SDF-1/CXCL12 with a ligand that prevents activation of CXCR4 through structure-based drug design. (Veldkamp CT, Ziarek JJ, Peterson FC, Chen Y, Volkman BF) J Am Chem Soc 2010 Jun 02;132(21):7242-3 PMID: 20459090 PMCID: PMC2941798 Scopus ID: 2-s2.0-77952813636 05/13/2010
• Rapid, robotic, small-scale protein production for NMR screening and structure determination. (Jensen DR, Woytovich C, Li M, Duvnjak P, Cassidy MS, Frederick RO, Bergeman LF, Peterson FC, Volkman BF) Protein Sci 2010 Mar;19(3):570-8 PMID: 20073081 PMCID: PMC2866281 Scopus ID: 2-s2.0-77249156883 01/15/2010
• Distal interactions within the par3-VE-cadherin complex. (Tyler RC, Peterson FC, Volkman BF) Biochemistry 2010 Feb 09;49(5):951-7 PMID: 20047332 PMCID: PMC2819025 Scopus ID: 2-s2.0-75749093457 01/06/2010
• An NMR structural study of nickel-substituted rubredoxin. (Goodfellow BJ, Duarte IC, Macedo AL, Volkman BF, Nunes SG, Moura I, Markley JL, Moura JJ) J Biol Inorg Chem 2010 Mar;15(3):409-20 PMID: 19997764 PMCID: PMC2831150 Scopus ID: 2-s2.0-77949273324 12/10/2009
• A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. (Melcher K, Ng LM, Zhou XE, Soon FF, Xu Y, Suino-Powell KM, Park SY, Weiner JJ, Fujii H, Chinnusamy V, Kovach A, Li J, Wang Y, Li J, Peterson FC, Jensen DR, Yong EL, Volkman BF, Cutler SR, Zhu JK, Xu HE) Nature 2009 Dec 03;462(7273):602-8 PMID: 19898420 PMCID: PMC2810868 Scopus ID: 2-s2.0-71449125748 11/10/2009
• Monomeric structure of the cardioprotective chemokine SDF-1/CXCL12. (Veldkamp CT, Ziarek JJ, Su J, Basnet H, Lennertz R, Weiner JJ, Peterson FC, Baker JE, Volkman BF) Protein Sci 2009 Jul;18(7):1359-69 PMID: 19551879 PMCID: PMC2775206 Scopus ID: 2-s2.0-67650092745 06/25/2009
• Chapter 3. Lymphotactin structural dynamics. (Volkman BF, Liu TY, Peterson FC) Methods Enzymol 2009;461:51-70 PMID: 19480914 PMCID: PMC3686570 Scopus ID: 2-s2.0-65749097254 06/02/2009
• Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. (Park SY, Fung P, Nishimura N, Jensen DR, Fujii H, Zhao Y, Lumba S, Santiago J, Rodrigues A, Chow TF, Alfred SE, Bonetta D, Finkelstein R, Provart NJ, Desveaux D, Rodriguez PL, McCourt P, Zhu JK, Schroeder JI, Volkman BF, Cutler SR) Science 2009 May 22;324(5930):1068-71 PMID: 19407142 PMCID: PMC2827199 Scopus ID: 2-s2.0-66249110335 05/02/2009
• Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds. (Lytle BL, Song J, de la Cruz NB, Peterson FC, Johnson KA, Bingman CA, Phillips GN Jr, Volkman BF) Proteins 2009 Jul;76(1):237-43 PMID: 19326460 PMCID: PMC2845785 Scopus ID: 2-s2.0-66249143729 03/28/2009
• Diversity of polyproline recognition by EVH1 domains. (Peterson FC, Volkman BF) Front Biosci (Landmark Ed) 2009 Jan 01;14(3):833-46 PMID: 19273103 PMCID: PMC3882067 Scopus ID: 2-s2.0-63849217132 03/11/2009
• The Center for Eukaryotic Structural Genomics. (Markley JL, Aceti DJ, Bingman CA, Fox BG, Frederick RO, Makino S, Nichols KW, Phillips GN Jr, Primm JG, Sahu SC, Vojtik FC, Volkman BF, Wrobel RL, Zolnai Z) J Struct Funct Genomics 2009 Apr;10(2):165-79 PMID: 19130299 PMCID: PMC2705709 Scopus ID: 2-s2.0-62949196874 01/09/2009
• Sequential tyrosine sulfation of CXCR4 by tyrosylprotein sulfotransferases. (Seibert C, Veldkamp CT, Peterson FC, Chait BT, Volkman BF, Sakmar TP) Biochemistry 2008 Oct 28;47(43):11251-62 PMID: 18834145 PMCID: PMC2662774 Scopus ID: 2-s2.0-54849422396 10/07/2008
• Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF-1/CXCL12. (Veldkamp CT, Seibert C, Peterson FC, De la Cruz NB, Haugner JC 3rd, Basnet H, Sakmar TP, Volkman BF) Sci Signal 2008 Sep 16;1(37):ra4 PMID: 18799424 PMCID: PMC2692298 Scopus ID: 2-s2.0-54849434087 09/19/2008
• Heterodimer formation of the myeloid zinc finger 1 SCAN domain and association with promyelocytic leukemia nuclear bodies. (Noll L, Peterson FC, Hayes PL, Volkman BF, Sander T) Leuk Res 2008 Oct;32(10):1582-92 PMID: 18472161 Scopus ID: 2-s2.0-44749092408 05/13/2008
• Altered dimer interface decreases stability in an amyloidogenic protein. (Baden EM, Owen BA, Peterson FC, Volkman BF, Ramirez-Alvarado M, Thompson JR) J Biol Chem 2008 Jun 06;283(23):15853-60 PMID: 18400753 PMCID: PMC2414275 Scopus ID: 2-s2.0-47049120015 04/11/2008
• Interconversion between two unrelated protein folds in the lymphotactin native state. (Tuinstra RL, Peterson FC, Kutlesa S, Elgin ES, Kron MA, Volkman BF) Proc Natl Acad Sci U S A 2008 Apr 01;105(13):5057-62 PMID: 18364395 PMCID: PMC2278211 Scopus ID: 2-s2.0-42449084477 03/28/2008
• Interconversion between two unrelated protein folds in the lymphotactin native state (Tuinstra R, Peterson F, Kutlesa S, Elgin ES, Kron M, Volkman B) Chemtracts March 2008;21(3):94-95 Scopus ID: 2-s2.0-58449127027 03/01/2008
• The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominantly unstructured protein. (Hayes PL, Lytle BL, Volkman BF, Peterson FC) Protein Sci 2008 Mar;17(3):571-6 PMID: 18287285 PMCID: PMC2248319 Scopus ID: 2-s2.0-39549098666 02/22/2008
• Solution structure of At3g28950 from Arabidopsis thaliana. (de la Cruz NB, Peterson FC, Volkman BF) Proteins 2008 May 01;71(2):546-51 PMID: 18214976 PMCID: PMC2758156 Scopus ID: 2-s2.0-41149118605 01/25/2008
• Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics. (Phillips GN Jr, Fox BG, Markley JL, Volkman BF, Bae E, Bitto E, Bingman CA, Frederick RO, McCoy JG, Lytle BL, Pierce BS, Song J, Twigger SN) J Struct Funct Genomics 2007 Sep;8(2-3):73-84 PMID: 17786587 Scopus ID: 2-s2.0-37249055016 09/06/2007
• Solution structure of a membrane-anchored ubiquitin-fold (MUB) protein from Homo sapiens. (de la Cruz NB, Peterson FC, Lytle BL, Volkman BF) Protein Sci 2007 Jul;16(7):1479-84 PMID: 17567738 PMCID: PMC2206703 Scopus ID: 2-s2.0-34250837588 06/15/2007
• An engineered second disulfide bond restricts lymphotactin/XCL1 to a chemokine-like conformation with XCR1 agonist activity. (Tuinstra RL, Peterson FC, Elgin ES, Pelzek AJ, Volkman BF) Biochemistry 2007 Mar 13;46(10):2564-73 PMID: 17302442 PMCID: PMC2734904 Scopus ID: 2-s2.0-33947191879 02/17/2007
• Erratum to "Structure of the SCAN Domain from the Tumor Suppressor Protein MZF1" [J. Mol. Biol. 363 (2006) 137-147] (DOI:10.1016/j.jmb.2006.07.063) (Peterson FC, Hayes PL, Waltner JK, Heisner AK, Jensen DR, Sander TL, Volkman BF) Journal of Molecular Biology 9 February 2007;366(1):346 Scopus ID: 2-s2.0-33846987238 02/09/2007
• Multiple WASP-interacting protein recognition motifs are required for a functional interaction with N-WASP. (Peterson FC, Deng Q, Zettl M, Prehoda KE, Lim WA, Way M, Volkman BF) J Biol Chem 2007 Mar 16;282(11):8446-53 PMID: 17229736 Scopus ID: 2-s2.0-34247179024 01/19/2007
• Erratum:The first structure from the SOUL/HBP family of heme-binding proteins, murine P22HBP (Journal of Biological Chemistry (2006) 281, (31553-31561)) (Dias JS, Macedo AL, Ferreira GC, Peterson FC, Volkman BF, Goodfellow BJ) Journal of Biological Chemistry 15 December 2006;281(50):38966 Scopus ID: 2-s2.0-33846002771 12/15/2006
• On-column refolding of recombinant chemokines for NMR studies and biological assays. (Veldkamp CT, Peterson FC, Hayes PL, Mattmiller JE, Haugner JC 3rd, de la Cruz N, Volkman BF) Protein Expr Purif 2007 Mar;52(1):202-9 PMID: 17071104 PMCID: PMC1868460 Scopus ID: 2-s2.0-33845933655 10/31/2006
• Structural determinants involved in the regulation of CXCL14/BRAK expression by the 26 S proteasome. (Peterson FC, Thorpe JA, Harder AG, Volkman BF, Schwarze SR) J Mol Biol 2006 Nov 03;363(4):813-22 PMID: 16987528 PMCID: PMC1664593 Scopus ID: 2-s2.0-33749637220 09/22/2006
• Structure of the SCAN domain from the tumor suppressor protein MZF1. (Peterson FC, Hayes PL, Waltner JK, Heisner AK, Jensen DR, Sander TL, Volkman BF) J Mol Biol 2006 Oct 13;363(1):137-47 PMID: 16950398 PMCID: PMC1941711 Scopus ID: 2-s2.0-33748804696 09/05/2006
• Gamma-glutamylcysteine synthetase-glutathione synthetase: domain structure and identification of residues important in substrate and glutathione binding. (Janowiak BE, Hayward MA, Peterson FC, Volkman BF, Griffith OW) Biochemistry 2006 Sep 05;45(35):10461-73 PMID: 16939198 Scopus ID: 2-s2.0-33748256537 08/31/2006
• The first structure from the SOUL/HBP family of heme-binding proteins, murine P22HBP. (Dias JS, Macedo AL, Ferreira GC, Peterson FC, Volkman BF, Goodfellow BJ) J Biol Chem 2006 Oct 20;281(42):31553-61 PMID: 16905545 Scopus ID: 2-s2.0-33846009114 08/15/2006
• Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family. (Lytle BL, Peterson FC, Tyler EM, Newman CL, Vinarov DA, Markley JL, Volkman BF) Acta Crystallogr Sect F Struct Biol Cryst Commun 2006 Jun 01;62(Pt 6):490-3 PMID: 16754964 PMCID: PMC2243094 Scopus ID: 2-s2.0-33745138479 06/07/2006
• Recognition of a CXCR4 sulfotyrosine by the chemokine stromal cell-derived factor-1alpha (SDF-1alpha/CXCL12). (Veldkamp CT, Seibert C, Peterson FC, Sakmar TP, Volkman BF) J Mol Biol 2006 Jun 23;359(5):1400-9 PMID: 16725153 PMCID: PMC2670582 Scopus ID: 2-s2.0-33745173829 05/27/2006
• 1H, 15N and 13C resonance assignments of the heme-binding protein murine p22HBP. (Dias JS, Macedo AL, Ferreira GC, Jeanty N, Taketani S, Goodfellow BJ, Peterson FC, Volkman BF) J Biomol NMR 2005 Aug;32(4):338 PMID: 16211492 Scopus ID: 2-s2.0-27244458222 10/08/2005
• Structure of the B3 domain from Arabidopsis thaliana protein At1g16640. (Waltner JK, Peterson FC, Lytle BL, Volkman BF) Protein Sci 2005 Sep;14(9):2478-83 PMID: 16081658 PMCID: PMC2253459 Scopus ID: 2-s2.0-24344502006 08/06/2005
• X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1. (Fox BG, Malone TE, Johnson KA, Madson SE, Aceti D, Bingman CA, Blommel PG, Buchan B, Burns B, Cao J, Cornilescu C, Doreleijers J, Ellefson J, Frederick R, Geetha H, Hruby D, Jeon WB, Kimball T, Kunert J, Markley JL, Newman C, Olson A, Peterson FC, Phillips GN Jr, Primm J, Ramirez B, Rosenberg NS, Runnels M, Seder K, Shaw J, Smith DW, Sreenath H, Song J, Sussman MR, Thao S, Troestler D, Tyler E, Tyler R, Ulrich E, Vinarov D, Vojtik F, Volkman BF, Wesenberg G, Wrobel RL, Zhang J, Zhao Q, Zolnai Z) Proteins 2005 Oct 01;61(1):206-8 PMID: 16080145 Scopus ID: 2-s2.0-24344437685 08/05/2005
• Solution structure of thioredoxin h1 from Arabidopsis thaliana. (Peterson FC, Lytle BL, Sampath S, Vinarov D, Tyler E, Shahan M, Markley JL, Volkman BF) Protein Sci 2005 Aug;14(8):2195-200 PMID: 15987893 PMCID: PMC2279331 Scopus ID: 2-s2.0-23644450385 07/01/2005
• Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies. (Tyler RC, Aceti DJ, Bingman CA, Cornilescu CC, Fox BG, Frederick RO, Jeon WB, Lee MS, Newman CS, Peterson FC, Phillips GN Jr, Shahan MN, Singh S, Song J, Sreenath HK, Tyler EM, Ulrich EL, Vinarov DA, Vojtik FC, Volkman BF, Wrobel RL, Zhao Q, Markley JL) Proteins 2005 May 15;59(3):633-43 PMID: 15789406 Scopus ID: 2-s2.0-20944435522 03/25/2005
• Cell-free protein production and labeling protocol for NMR-based structural proteomics. (Vinarov DA, Lytle BL, Peterson FC, Tyler EM, Volkman BF, Markley JL) Nat Methods 2004 Nov;1(2):149-53 PMID: 15782178 Scopus ID: 2-s2.0-14344256801 03/23/2005
• The monomer-dimer equilibrium of stromal cell-derived factor-1 (CXCL 12) is altered by pH, phosphate, sulfate, and heparin. (Veldkamp CT, Peterson FC, Pelzek AJ, Volkman BF) Protein Sci 2005 Apr;14(4):1071-81 PMID: 15741341 PMCID: PMC2253449 Scopus ID: 2-s2.0-15244345079 03/03/2005
• Macromolecular Structure Determination by NMR Spectroscopy (Markley JL, Ulrich EL, Westler WM, Volkman BF) Structural Bioinformatics 28 January 2005:89-113 Scopus ID: 2-s2.0-85050264797 01/28/2005
• Solution structure of T4moC, the Rieske ferredoxin component of the toluene 4-monooxygenase complex. (Skjeldal L, Peterson FC, Doreleijers JF, Moe LA, Pikus JD, Westler WM, Markley JL, Volkman BF, Fox BG) J Biol Inorg Chem 2004 Dec;9(8):945-53 PMID: 15452777 Scopus ID: 2-s2.0-12144264228 09/29/2004
• Solution structure of a ubiquitin-like domain from tubulin-binding cofactor B. (Lytle BL, Peterson FC, Qiu SH, Luo M, Zhao Q, Markley JL, Volkman BF) J Biol Chem 2004 Nov 05;279(45):46787-93 PMID: 15364906 Scopus ID: 2-s2.0-8744267531 09/15/2004
• Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana. (Bingman CA, Johnson KA, Peterson FC, Frederick RO, Zhao Q, Thao S, Fox BG, Volkman BF, Jeon WB, Smith DW, Newman CS, Ulrich EL, Hegeman A, Sussman MR, Markley JL, Phillips GN Jr) Proteins 2004 Oct 01;57(1):218-20 PMID: 15326607 Scopus ID: 2-s2.0-4444223451 08/25/2004
• Crystal structure of At2g03760, a putative steroid sulfotransferase from Arabidopsis thaliana. (Smith DW, Johnson KA, Bingman CA, Aceti DJ, Blommel PG, Wrobel RL, Frederick RO, Zhao Q, Sreenath H, Fox BG, Volkman BF, Jeon WB, Newman CS, Ulrich EL, Hegeman AD, Kimball T, Thao S, Sussman MR, Markley JL, Phillips GN Jr) Proteins 2004 Dec 01;57(4):854-7 PMID: 15317023 Scopus ID: 2-s2.0-10344232450 08/19/2004
• Production in two-liter beverage bottles of proteins for NMR structure determination labeled with either 15N- or 13C-15N. (Zhao Q, Frederick R, Seder K, Thao S, Sreenath H, Peterson F, Volkman BF, Markley JL, Fox BG) J Struct Funct Genomics 2004;5(1-2):87-93 PMID: 15263847 Scopus ID: 2-s2.0-3543148407 07/21/2004
• Cdc42 regulates the Par-6 PDZ domain through an allosteric CRIB-PDZ transition. (Peterson FC, Penkert RR, Volkman BF, Prehoda KE) Mol Cell 2004 Mar 12;13(5):665-76 PMID: 15023337 Scopus ID: 2-s2.0-1642276423 03/17/2004
• Structure of the hypothetical protein At3g17210 from Arabidopsis thaliana. (Lytle BL, Peterson FC, Kjer KL, Frederick RO, Zhao Q, Thao S, Bingman C, Johnson KA, Phillips GN Jr, Volkman BF) J Biomol NMR 2004 Apr;28(4):397-400 PMID: 14872131 Scopus ID: 2-s2.0-10744228047 02/12/2004
• Identification and characterization of a glycosaminoglycan recognition element of the C chemokine lymphotactin. (Peterson FC, Elgin ES, Nelson TJ, Zhang F, Hoeger TJ, Linhardt RJ, Volkman BF) J Biol Chem 2004 Mar 26;279(13):12598-604 PMID: 14707146 Scopus ID: 2-s2.0-1842477451 01/07/2004
• Project management system for structural and functional proteomics: Sesame. (Zolnai Z, Lee PT, Li J, Chapman MR, Newman CS, Phillips GN Jr, Rayment I, Ulrich EL, Volkman BF, Markley JL) J Struct Funct Genomics 2003;4(1):11-23 PMID: 12943363 Scopus ID: 2-s2.0-12444272254 08/29/2003
• The NMR solution structure of BeF(3)(-)-activated Spo0F reveals the conformational switch in a phosphorelay system. (Gardino AK, Volkman BF, Cho HS, Lee SY, Wemmer DE, Kern D) J Mol Biol 2003 Aug 01;331(1):245-54 PMID: 12875849 Scopus ID: 2-s2.0-0037485779 07/24/2003
• A novel zinc finger is required for Mcm10 homocomplex assembly. (Cook CR, Kung G, Peterson FC, Volkman BF, Lei M) J Biol Chem 2003 Sep 19;278(38):36051-8 PMID: 12844493 Scopus ID: 2-s2.0-0141815735 07/08/2003
• Macromolecular structure determination by NMR spectroscopy. (Markley JL, Ulrich EL, Westler WM, Volkman BF) Methods Biochem Anal 2003;44:89-113 PMID: 12647383 Scopus ID: 2-s2.0-0037263885 03/22/2003
• Structure of the N-WASP EVH1 domain-WIP complex: insight into the molecular basis of Wiskott-Aldrich Syndrome. (Volkman BF, Prehoda KE, Scott JA, Peterson FC, Lim WA) Cell 2002 Nov 15;111(4):565-76 PMID: 12437929 Scopus ID: 2-s2.0-0037112347 11/20/2002
• Zinc-substituted Desulfovibrio gigas desulforedoxins: resolving subunit degeneracy with nonsymmetric pseudocontact shifts. (Goodfellow BJ, Nunes SG, Rusnak F, Moura I, Ascenso C, Moura JJ, Volkman BF, Markley JL) Protein Sci 2002 Oct;11(10):2464-70 PMID: 12237467 PMCID: PMC2373705 Scopus ID: 2-s2.0-0036785636 09/19/2002
• Structural rearrangement of human lymphotactin, a C chemokine, under physiological solution conditions. (Kuloğlu ES, McCaslin DR, Markley JL, Volkman BF) J Biol Chem 2002 May 17;277(20):17863-70 PMID: 11889129 PMCID: PMC4451178 Scopus ID: 2-s2.0-0037124112 03/13/2002
• Refined structure and metal binding site of the kalata B1 peptide. (Skjeldal L, Gran L, Sletten K, Volkman BF) Arch Biochem Biophys 2002 Mar 15;399(2):142-8 PMID: 11888199 Scopus ID: 2-s2.0-0037088544 03/13/2002
• Staphylococcal superantigens induce lymphotactin production by human CD4+ and CD8+ T cells. (Tikhonov I, Kitabwalla M, Wallace M, Malkovsky M, Volkman B, Pauza CD) Cytokine 2001 Oct 21;16(2):73-8 PMID: 11683588 Scopus ID: 2-s2.0-0036061373 10/31/2001
• Monomeric solution structure of the prototypical 'C' chemokine lymphotactin. (Kuloglu ES, McCaslin DR, Kitabwalla M, Pauza CD, Markley JL, Volkman BF) Biochemistry 2001 Oct 23;40(42):12486-96 PMID: 11601972 PMCID: PMC3826542 Scopus ID: 2-s2.0-0035940521 10/17/2001
• Biosynthesis of D-alanyl-lipoteichoic acid: the tertiary structure of apo-D-alanyl carrier protein. (Volkman BF, Zhang Q, Debabov DV, Rivera E, Kresheck GC, Neuhaus FC) Biochemistry 2001 Jul 10;40(27):7964-72 PMID: 11434765 Scopus ID: 2-s2.0-0035838447 07/04/2001
• N-terminal residues of plasmatocyte-spreading peptide possess specific determinants required for biological activity. (Clark KD, Volkman BF, Thoetkiattikul H, Hayakawa Y, Strand MR) J Biol Chem 2001 Oct 05;276(40):37431-5 PMID: 11432871 Scopus ID: 2-s2.0-0035813156 07/04/2001
• Alanine-scanning mutagenesis of plasmatocyte spreading peptide identifies critical residues for biological activity. (Clark KD, Volkman BF, Thoetkiattikul H, King D, Hayakawa Y, Strand MR) J Biol Chem 2001 May 25;276(21):18491-6 PMID: 11279096 Scopus ID: 2-s2.0-0035947644 03/30/2001
• Solution structure of a type I dockerin domain, a novel prokaryotic, extracellular calcium-binding domain. (Lytle BL, Volkman BF, Westler WM, Heckman MP, Wu JH) J Mol Biol 2001 Mar 30;307(3):745-53 PMID: 11273698 Scopus ID: 2-s2.0-0035970297 03/29/2001
• Two-state allosteric behavior in a single-domain signaling protein. (Volkman BF, Lipson D, Wemmer DE, Kern D) Science 2001 Mar 23;291(5512):2429-33 PMID: 11264542 Scopus ID: 2-s2.0-0035937443 03/27/2001
• Sequence-specific NMR resonance assignments of the backbone atoms for the olfactory marker protein, OMP. (Baldisseri DM, Margolis JW, Omotosho PA, Volkman BF, Margolis FL) J Biomol NMR 2000 Aug;17(4):353-4 PMID: 11014601 Scopus ID: 2-s2.0-0033811459 10/03/2000
• Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy. (Lytle BL, Volkman BF, Westler WM, Wu JH) Arch Biochem Biophys 2000 Jul 15;379(2):237-44 PMID: 10898940 Scopus ID: 2-s2.0-0034661436 07/19/2000
• Structure of a transiently phosphorylated switch in bacterial signal transduction. (Kern D, Volkman BF, Luginbühl P, Nohaile MJ, Kustu S, Wemmer DE) Nature 1999 Dec 23-30;402(6764):894-8 PMID: 10622255 Scopus ID: 2-s2.0-0033599026 01/06/2000
• Redox-dependent magnetic alignment of Clostridium pasteurianum rubredoxin: Measurement of magnetic susceptibility anisotropy and prediction of pseudocontact shift contributions (Volkman BF, Wilkens SJ, Lee AL, Xia B, Westler WM, Beger R, Markley JL) Journal of the American Chemical Society 19 May 1999;121(19):4677-4683 Scopus ID: 2-s2.0-0033583730 05/19/1999
• NMR solution structure of plastocyanin from the photosynthetic prokaryote, Prochlorothrix hollandica. (Babu CR, Volkman BF, Bullerjahn GS) Biochemistry 1999 Apr 20;38(16):4988-95 PMID: 10213601 Scopus ID: 2-s2.0-0033586717 04/23/1999
• Structure of the insect cytokine peptide plasmatocyte-spreading peptide 1 from Pseudoplusia includens. (Volkman BF, Anderson ME, Clark KD, Hayakawa Y, Strand MR, Markley JL) J Biol Chem 1999 Feb 19;274(8):4493-6 PMID: 9988679 Scopus ID: 2-s2.0-0033582425 02/13/1999
• Determination of internuclear angles of DNA using paramagnetic-assisted magnetic alignment. (Beger RD, Marathias VM, Volkman BF, Bolton PH) J Magn Reson 1998 Nov;135(1):256-9 PMID: 9799703 Scopus ID: 2-s2.0-0032209464 11/04/1998
• Contribution of backbone dynamics to entropy changes occurring on oxidation of cytochrome b5. Can redox linked changes in hydrogen bond networks modulate reduction potentials? (Dangi B, Blankman JI, Miller CJ, Volkman BF, Guiles RD) Journal of Physical Chemistry B 15 October 1998;102(42):8201-8208 Scopus ID: 2-s2.0-0001174286 10/15/1998
• Inadequacies of the point-dipole approximation for describing electron-nuclear interactions in paramagnetic proteins: Hybrid density functional calculations and the analysis of NMR relaxation of high-spin iron(III) rubredoxin (Wilkens SJ, Xia B, Volkman BF, Weinhold F, Markley JL, Westler WM) Journal of Physical Chemistry B 15 October 1998;102(42):8300-8305 Scopus ID: 2-s2.0-0000020727 10/15/1998
• Practical model fitting approaches to the direct extraction of NMR parameters simultaneously from all dimensions of multidimensional NMR spectra. (Chylla RA, Volkman BF, Markley JL) J Biomol NMR 1998 Aug;12(2):277-97 PMID: 9751999 Scopus ID: 2-s2.0-0032133388 09/30/1998
• Solution structure and backbone dynamics of component IV Glycera dibranchiata monomeric hemoglobin-CO. (Volkman BF, Alam SL, Satterlee JD, Markley JL) Biochemistry 1998 Aug 04;37(31):10906-19 PMID: 9692983 Scopus ID: 2-s2.0-0032483048 08/07/1998
• Detailed NMR analysis of the heme-protein interactions in component IV Glycera dibranchiata monomeric hemoglobin-CO. (Alam SL, Volkman BF, Markley JL, Satterlee JD) J Biomol NMR 1998 Feb;11(2):119-33 PMID: 9679291 Scopus ID: 2-s2.0-0031993052 07/29/1998
• Protonation behavior of histidine 24 and histidine 119 in forming the pH 4 folding intermediate of apomyoglobin. (Geierstanger B, Jamin M, Volkman BF, Baldwin RL) Biochemistry 1998 Mar 24;37(12):4254-65 PMID: 9521748 05/02/1998
• Evidence for oxidation-state-dependent conformational changes in human ferredoxin from multinuclear, multidimensional NMR spectroscopy. (Xia B, Volkman BF, Markley JL) Biochemistry 1998 Mar 17;37(11):3965-73 PMID: 9521718 Scopus ID: 2-s2.0-0032539991 04/02/1998
• Assignment of 1H, 13C, and 15N signals of reduced Clostridium pasteurianum rubredoxin: oxidation state-dependent changes in chemical shifts and relaxation rates. (Prantner AM, Volkman BF, Wilkens SJ, Xia B, Markley JL) J Biomol NMR 1997 Dec;10(4):411-2 PMID: 9460246 Scopus ID: 2-s2.0-0031308705 02/14/1998
• Assignment of 1H, 13C, and 15N signals of oxidized Clostridium pasteurianum rubredoxin. (Volkman BF, Prantner AM, Wilkens SJ, Xia B, Markley JL) J Biomol NMR 1997 Dec;10(4):409-10 PMID: 9460245 Scopus ID: 2-s2.0-0031297051 02/14/1998
• Chemical shift mapping of the RNA-binding interface of the multiple-RBD protein sex-lethal. (Lee AL, Volkman BF, Robertson SA, Rudner DZ, Barbash DA, Cline TW, Kanaar R, Rio DC, Wemmer DE) Biochemistry 1997 Nov 25;36(47):14306-17 PMID: 9398148 Scopus ID: 2-s2.0-0030671070 12/16/1997
• Microscopic pKa values of Escherichia coli thioredoxin. (Chivers PT, Prehoda KE, Volkman BF, Kim BM, Markley JL, Raines RT) Biochemistry 1997 Dec 02;36(48):14985-91 PMID: 9398223 Scopus ID: 2-s2.0-0030608830 12/16/1997
• The solution structure of co-ligated glycera dibranchiata monomer hemoglobin component iv allows rational functional redesign (Satterlee JD, Volkman BF, Alara SL, Markley JL) FASEB Journal 1997;11(9):A1326 Scopus ID: 2-s2.0-33750233842 12/01/1997
• Deletion of a single amino acid changes the folding of an apamin hybrid sequence peptide to that of endothelin. (Volkman BF, Wemmer DE) Biopolymers 1997 Apr 05;41(4):451-60 PMID: 9080780 Scopus ID: 2-s2.0-0031553985 04/05/1997
• Three-dimensional solution structure of the N-terminal receiver domain of NTRC. (Volkman BF, Nohaile MJ, Amy NK, Kustu S, Wemmer DE) Biochemistry 1995 Jan 31;34(4):1413-24 PMID: 7827089 Scopus ID: 2-s2.0-0028927334 01/31/1995
• Short peptide fragments derived from HMG-I/Y proteins bind specifically to the minor groove of DNA. (Geierstanger BH, Volkman BF, Kremer W, Wemmer DE) Biochemistry 1994 May 03;33(17):5347-55 PMID: 8172908 Scopus ID: 2-s2.0-0028303273 05/03/1994
• Site-Specific Isotopic Labeling of Proteins for NMR Studies (Ellman JA, Volkman BF, Mendel DE, Schultz PG, Wemmer DE) Journal of the American Chemical Society 1 September 1992;114(20):7959-7961 Scopus ID: 2-s2.0-84985585914 09/01/1992