Medical College of Wisconsin
CTSICores SearchResearch InformaticsREDCap

Publications indexed to the term Oligonucleotide Array Sequence Analysis

FacultyTitle
4Identification of molecular signatures of cystic fibrosis disease status with plasma-based functional genomics. (Levy H, Jia S, Pan A, Zhang X, Kaldunski M, Nugent ML, Reske M, Feliciano RA, Quintero D, Renda MM, Woods KJ, Murkowski K, Johnson K, Verbsky J, Dasu T, Ideozu JE, McColley S, Quasney MW, Dahmer MK, Avner E, Farrell PM, Cannon CL, Jacob H, Simpson PM, Hessner MJ) Physiol Genomics 2019 01 01;51(1):27-41       8 Citations
1Withaferin A Associated Differential Regulation of Inflammatory Cytokines. (Dubey S, Yoon H, Cohen MS, Nagarkatti P, Nagarkatti M, Karan D) Front Immunol 2018;9:195    
1Long ncRNA Landscape in the Ileum of Treatment-Naive Early-Onset Crohn Disease. (Haberman Y, BenShoshan M, Di Segni A, Dexheimer PJ, Braun T, Weiss B, Walters TD, Baldassano RN, Noe JD, Markowitz J, Rosh J, Heyman MB, Griffiths AM, Crandall WV, Mack DR, Baker SS, Kellermayer R, Patel A, Otley A, Steiner SJ, Gulati AS, Guthery SL, LeLeiko N, Moulton D, Kirschner BS, Snapper S, Avivi C, Barshack I, Oliva-Hemker M, Cohen SA, Keljo DJ, Ziring D, Anikster Y, Aronow B, Hyams JS, Kugathasan S, Denson LA) Inflamm Bowel Dis 2018 01 18;24(2):346-360       25 Citations
2Genome-Wide Association Study to Find Modifiers for Tetralogy of Fallot in the 22q11.2 Deletion Syndrome Identifies Variants in the GPR98 Locus on 5q14.3. (Guo T, Repetto GM, McDonald McGinn DM, Chung JH, Nomaru H, Campbell CL, Blonska A, Bassett AS, Chow EWC, Mlynarski EE, Swillen A, Vermeesch J, Devriendt K, Gothelf D, Carmel M, Michaelovsky E, Schneider M, Eliez S, Antonarakis SE, Coleman K, Tomita-Mitchell A, Mitchell ME, Digilio MC, Dallapiccola B, Marino B, Philip N, Busa T, Kushan-Wells L, Bearden CE, Piotrowicz M, Hawuła W, Roberts AE, Tassone F, Simon TJ, van Duin EDA, van Amelsvoort TA, Kates WR, Zackai E, Johnston HR, Cutler DJ, Agopian AJ, Goldmuntz E, Mitchell LE, Wang T, Emanuel BS, Morrow BE, International 22q11.2 Consortium/Brain and Behavior Consortium*) Circ Cardiovasc Genet 2017 Oct;10(5)    
1Microarray Analysis of Hypertension. (Keen HL, Sigmund CD) Methods Mol Biol 2017;1527:41-52       3 Citations
1Maternal methylmercury from a wild-caught walleye diet induces developmental abnormalities in zebrafish. (Liu Q, Klingler RH, Wimpee B, Dellinger M, King-Heiden T, Grzybowski J, Gerstenberger SL, Weber DN, Carvan MJ 3rd) Reprod Toxicol 2016 10;65:272-282       7 Citations
2E2f8 mediates tumor suppression in postnatal liver development. (Kent LN, Rakijas JB, Pandit SK, Westendorp B, Chen HZ, Huntington JT, Tang X, Bae S, Srivastava A, Senapati S, Koivisto C, Martin CK, Cuitino MC, Perez M, Clouse JM, Chokshi V, Shinde N, Kladney R, Sun D, Perez-Castro A, Matondo RB, Nantasanti S, Mokry M, Huang K, Machiraju R, Fernandez S, Rosol TJ, Coppola V, Pohar KS, Pipas JM, Schmidt CR, de Bruin A, Leone G) J Clin Invest 2016 08 01;126(8):2955-69       30 Citations
1The first patient with tandem duplication of 6q14q16: Molecular and phenotypic characterization. (Sanmann JN, Casas KA, Bevilacqua J, Bishay DL, Clark T, Van Dyke AZ, Leiferman PC, Reddi HV, Starr LJ) Am J Med Genet A 2016 09;170(9):2416-20       2 Citations
1Transcription Profile in Sporadic Multiple Symmetric Lipomatosis Reveals Differential Expression at the Level of Adipose Tissue-Derived Stem Cells. (Prantl L, Schreml J, Gehmert S, Klein S, Bai X, Zeitler K, Schreml S, Alt E, Gehmert S, Felthaus O) Plast Reconstr Surg 2016 Apr;137(4):1181-1190       12 Citations
2Ndufc2 Gene Inhibition Is Associated With Mitochondrial Dysfunction and Increased Stroke Susceptibility in an Animal Model of Complex Human Disease. (Rubattu S, Di Castro S, Schulz H, Geurts AM, Cotugno M, Bianchi F, Maatz H, Hummel O, Falak S, Stanzione R, Marchitti S, Scarpino S, Giusti B, Kura A, Gensini GF, Peyvandi F, Mannucci PM, Rasura M, Sciarretta S, Dwinell MR, Hubner N, Volpe M) J Am Heart Assoc 2016 Feb 17;5(2)    
1Transcriptome regulation and chromatin occupancy by E2F3 and MYC in mice. (Tang X, Liu H, Srivastava A, Pécot T, Chen Z, Wang Q, Huang K, Sáenz-Robles MT, Cantalupo P, Pipas J, Leone G) Sci Data 2016 Feb 16;3:160008       1 Citation
1Translating golden retriever muscular dystrophy microarray findings to novel biomarkers for cardiac/skeletal muscle function in Duchenne muscular dystrophy. (Galindo CL, Soslow JH, Brinkmeyer-Langford CL, Gupte M, Smith HM, Sengsayadeth S, Sawyer DB, Benson DW, Kornegay JN, Markham LW) Pediatr Res 2016 Apr;79(4):629-36       16 Citations
1The Role of the Immune Response in the Pathogenesis of Thyroid Eye Disease: A Reassessment. (Rosenbaum JT, Choi D, Wong A, Wilson DJ, Grossniklaus HE, Harrington CA, Dailey RA, Ng JD, Steele EA, Czyz CN, Foster JA, Tse D, Alabiad C, Dubovy S, Parekh PK, Harris GJ, Kazim M, Patel PJ, White VA, Dolman PJ, Edward DP, Alkatan HM, Al Hussain H, Selva D, Yeatts RP, Korn BS, Kikkawa DO, Stauffer P, Planck SR) PLoS One 2015;10(9):e0137654       7 Citations
3Phenotypic Characterization of Mice Carrying Homozygous Deletion of KLF11, a Gene in Which Mutations Cause Human Neonatal and MODY VII Diabetes. (Mathison A, Escande C, Calvo E, Seo S, White T, Salmonson A, Faubion WA Jr, Buttar N, Iovanna J, Lomberk G, Chini EN, Urrutia R) Endocrinology 2015 Oct;156(10):3581-95       4 Citations
1Orbital pseudotumor can be a localized form of granulomatosis with polyangiitis as revealed by gene expression profiling. (Rosenbaum JT, Choi D, Wilson DJ, Grossniklaus HE, Harrington CA, Sibley CH, Dailey RA, Ng JD, Steele EA, Czyz CN, Foster JA, Tse D, Alabiad C, Dubovy S, Parekh PK, Harris GJ, Kazim M, Patel PJ, White VA, Dolman PJ, Korn BS, Kikkawa DO, Edward DP, Alkatan HM, al-Hussain H, Yeatts RP, Selva D, Stauffer P, Planck SR) Exp Mol Pathol 2015 Oct;99(2):271-8       17 Citations
1Microarray Determination of the Expression of Drug Transporters in Humans and Animal Species Used for the Investigation of Nasal Absorption. (Al-Ghabeish M, Scheetz T, Assem M, Donovan MD) Mol Pharm 2015 Aug 03;12(8):2742-54       15 Citations
1Calcium/calmodulin-dependent kinase II inhibition in smooth muscle reduces angiotensin II-induced hypertension by controlling aortic remodeling and baroreceptor function. (Prasad AM, Morgan DA, Nuno DW, Ketsawatsomkron P, Bair TB, Venema AN, Dibbern ME, Kutschke WJ, Weiss RM, Lamping KG, Chapleau MW, Sigmund CD, Rahmouni K, Grumbach IM) J Am Heart Assoc 2015 Jun 15;4(6):e001949       19 Citations
1Epigenetics and miRNA as predictive markers and targets for lung cancer chemotherapy. (El-Awady RA, Hersi F, Al-Tunaiji H, Saleh EM, Abdel-Wahab AH, Al Homssi A, Suhail M, El-Serafi A, Al-Tel T) Cancer Biol Ther 2015;16(7):1056-70       30 Citations
1NeuroX, a fast and efficient genotyping platform for investigation of neurodegenerative diseases. (Nalls MA, Bras J, Hernandez DG, Keller MF, Majounie E, Renton AE, Saad M, Jansen I, Guerreiro R, Lubbe S, Plagnol V, Gibbs JR, Schulte C, Pankratz N, Sutherland M, Bertram L, Lill CM, DeStefano AL, Faroud T, Eriksson N, Tung JY, Edsall C, Nichols N, Brooks J, Arepalli S, Pliner H, Letson C, Heutink P, Martinez M, Gasser T, Traynor BJ, Wood N, Hardy J, Singleton AB, International Parkinson's Disease Genomics Consortium (IPDGC), Parkinson's Disease meta-analysis consortium) Neurobiol Aging 2015 Mar;36(3):1605.e7-12       60 Citations
1NEK2 mediates ALDH1A1-dependent drug resistance in multiple myeloma. (Yang Y, Zhou W, Xia J, Gu Z, Wendlandt E, Zhan X, Janz S, Tricot G, Zhan F) Oncotarget 2014 Dec 15;5(23):11986-97       34 Citations
1Histopathologic alterations associated with global gene expression due to chronic dietary TCDD exposure in juvenile zebrafish. (Liu Q, Spitsbergen JM, Cariou R, Huang CY, Jiang N, Goetz G, Hutz RJ, Tonellato PJ, Carvan MJ 3rd) PLoS One 2014;9(7):e100910       13 Citations
1GATA4 and GATA6 regulate intestinal epithelial cytodifferentiation during development. (Walker EM, Thompson CA, Battle MA) Dev Biol 2014 Aug 15;392(2):283-94       37 Citations
1Genomic profiling of intrahepatic cholangiocarcinoma: refining prognosis and identifying therapeutic targets. (Zhu AX, Borger DR, Kim Y, Cosgrove D, Ejaz A, Alexandrescu S, Groeschl RT, Deshpande V, Lindberg JM, Ferrone C, Sempoux C, Yau T, Poon R, Popescu I, Bauer TW, Gamblin TC, Gigot JF, Anders RA, Pawlik TM) Ann Surg Oncol 2014 Nov;21(12):3827-34       81 Citations
1Notch3 pathway alterations in ovarian cancer. (Hu W, Liu T, Ivan C, Sun Y, Huang J, Mangala LS, Miyake T, Dalton HJ, Pradeep S, Rupaimoole R, Previs RA, Han HD, Bottsford-Miller J, Zand B, Kang Y, Pecot CV, Nick AM, Wu SY, Lee JS, Sehgal V, Ram P, Liu J, Tucker SL, Lopez-Berestein G, Baggerly KA, Coleman RL, Sood AK) Cancer Res 2014 Jun 15;74(12):3282-93       39 Citations
1TLR4 ligands lipopolysaccharide and monophosphoryl lipid a differentially regulate effector and memory CD8+ T Cell differentiation. (Cui W, Joshi NS, Liu Y, Meng H, Kleinstein SH, Kaech SM) J Immunol 2014 May 01;192(9):4221-32       40 Citations
1Expression profiling of the RPE in zebrafish smarca4 mutant revealed altered signals that potentially affect RPE and retinal differentiation. (Zhang L, Ma P, Collery R, Trowbridge S, Zhang M, Zhong W, Leung YF) Mol Vis 2014;20:56-72       4 Citations
2Concordant effects of aromatase inhibitors on gene expression in ER+ Rat and human mammary cancers and modulation of the proteins coded by these genes. (Lu Y, You M, Ghazoui Z, Liu P, Vedell PT, Wen W, Bode AM, Grubbs CJ, Lubet RA) Cancer Prev Res (Phila) 2013 Nov;6(11):1151-61       9 Citations
1Chromophobe renal cell carcinoma--chromosomal aberration variability and its relation to Paner grading system: an array CGH and FISH analysis of 37 cases. (Sperga M, Martinek P, Vanecek T, Grossmann P, Bauleth K, Perez-Montiel D, Alvarado-Cabrero I, Nevidovska K, Lietuvietis V, Hora M, Michal M, Petersson F, Kuroda N, Suster S, Branzovsky J, Hes O) Virchows Arch 2013 Oct;463(4):563-73       31 Citations
1Genomic analysis of stress response against arsenic in Caenorhabditis elegans. (Sahu SN, Lewis J, Patel I, Bozdag S, Lee JH, Sprando R, Cinar HN) PLoS One 2013;8(7):e66431    
1Antagonistic regulation by the transcription factors C/EBPα and MITF specifies basophil and mast cell fates. (Qi X, Hong J, Chaves L, Zhuang Y, Chen Y, Wang D, Chabon J, Graham B, Ohmori K, Li Y, Huang H) Immunity 2013 Jul 25;39(1):97-110       75 Citations
1Global profiling of prolactin-modulated transcripts in breast cancer in vivo. (Sato T, Tran TH, Peck AR, Liu C, Ertel A, Lin J, Neilson LM, Rui H) Mol Cancer 2013 Jun 12;12:59       23 Citations
1Functional genomic assessment of phosgene-induced acute lung injury in mice. (Leikauf GD, Concel VJ, Bein K, Liu P, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA Jr, Upadhyay S, Cario C, Di YP, Vuga LJ, Kostem E, Eskin E, You M, Kaminski N, Prows DR, Knoell DL, Fabisiak JP) Am J Respir Cell Mol Biol 2013 Sep;49(3):368-83       15 Citations
1Increased dietary intake of vitamin A promotes aortic valve calcification in vivo. (Huk DJ, Hammond HL, Kegechika H, Lincoln J) Arterioscler Thromb Vasc Biol 2013 Feb;33(2):285-93       21 Citations
1Concordance of DMET plus genotyping results with those of orthogonal genotyping methods. (Fernandez CA, Smith C, Yang W, Lorier R, Crews KR, Kornegay N, Hicks JK, Stewart CF, Kawedia JD, Ramsey LB, Liu C, Evans WE, Relling MV, Broeckel U) Clin Pharmacol Ther 2012 Sep;92(3):360-5       32 Citations
1Coex-Rank: An approach incorporating co-expression information for combined analysis of microarray data. (Cai J, Keen HL, Sigmund CD, Casavant TL) J Integr Bioinform 2012 Jul 30;9(1):208       3 Citations
1Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. (Ramsköld D, Luo S, Wang YC, Li R, Deng Q, Faridani OR, Daniels GA, Khrebtukova I, Loring JF, Laurent LC, Schroth GP, Sandberg R) Nat Biotechnol 2012 Aug;30(8):777-82       773 Citations
1The feed-forward loop between YB-1 and MYC is essential for multiple myeloma cell survival. (Bommert KS, Effenberger M, Leich E, Küspert M, Murphy D, Langer C, Moll R, Janz S, Mottok A, Weissbach S, Rosenwald A, Bargou R, Bommert K) Leukemia 2013 Feb;27(2):441-50       23 Citations
1E-cadherin is required for intestinal morphogenesis in the mouse. (Bondow BJ, Faber ML, Wojta KJ, Walker EM, Battle MA) Dev Biol 2012 Nov 01;371(1):1-12       49 Citations
1Mechanisms of cardioprotection resulting from Brown Norway chromosome 16 substitution in the salt-sensitive Dahl rat. (Kriegel AJ, Didier DN, Li P, Lazar J, Greene AS) Physiol Genomics 2012 Aug 17;44(16):819-27       4 Citations
1Clinical phenotype and candidate genes for the 5q31.3 microdeletion syndrome. (Hosoki K, Ohta T, Natsume J, Imai S, Okumura A, Matsui T, Harada N, Bacino CA, Scaglia F, Jones JY, Niikawa N, Saitoh S) Am J Med Genet A 2012 Aug;158A(8):1891-6       15 Citations
1Genomic imbalances in benign metastasizing leiomyoma: characterization by conventional karyotypic, fluorescence in situ hybridization, and whole genome SNP array analysis. (Bowen JM, Cates JM, Kash S, Itani D, Gonzalez A, Huang D, Oliveira A, Bridge JA) Cancer Genet 2012 May;205(5):249-54       25 Citations
3Role of genetic modifiers in an orthologous rat model of ARPKD. (O'Meara CC, Hoffman M, Sweeney WE Jr, Tsaih SW, Xiao B, Jacob HJ, Avner ED, Moreno C) Physiol Genomics 2012 Aug 01;44(15):741-53       18 Citations
1Genotype imputation for African Americans using data from HapMap phase II versus 1000 genomes projects. (Sung YJ, Gu CC, Tiwari HK, Arnett DK, Broeckel U, Rao DC) Genet Epidemiol 2012 Jul;36(5):508-16       11 Citations
3Requirements for growth and IL-10 expression of highly purified human T regulatory cells. (Bonacci B, Edwards B, Jia S, Williams CB, Hessner MJ, Gauld SB, Verbsky JW) J Clin Immunol 2012 Oct;32(5):1118-28       10 Citations
1Collaborative Ocular Oncology Group report number 1: prospective validation of a multi-gene prognostic assay in uveal melanoma. (Onken MD, Worley LA, Char DH, Augsburger JJ, Correa ZM, Nudleman E, Aaberg TM Jr, Altaweel MM, Bardenstein DS, Finger PT, Gallie BL, Harocopos GJ, Hovland PG, McGowan HD, Milman T, Mruthyunjaya P, Simpson ER, Smith ME, Wilson DJ, Wirostko WJ, Harbour JW) Ophthalmology 2012 Aug;119(8):1596-603       250 Citations
2Atypical E2F repressors and activators coordinate placental development. (Ouseph MM, Li J, Chen HZ, Pécot T, Wenzel P, Thompson JC, Comstock G, Chokshi V, Byrne M, Forde B, Chong JL, Huang K, Machiraju R, de Bruin A, Leone G) Dev Cell 2012 Apr 17;22(4):849-62       59 Citations
2Intestinal microbiota as novel biomarkers of prior radiation exposure. (Lam V, Moulder JE, Salzman NH, Dubinsky EA, Andersen GL, Baker JE) Radiat Res 2012 May;177(5):573-83       41 Citations
1Identification of vascular and hematopoietic genes downstream of etsrp by deep sequencing in zebrafish. (Gomez G, Lee JH, Veldman MB, Lu J, Xiao X, Lin S) PLoS One 2012;7(3):e31658       16 Citations
4Human gene copy number spectra analysis in congenital heart malformations. (Tomita-Mitchell A, Mahnke DK, Struble CA, Tuffnell ME, Stamm KD, Hidestrand M, Harris SE, Goetsch MA, Simpson PM, Bick DP, Broeckel U, Pelech AN, Tweddell JS, Mitchell ME) Physiol Genomics 2012 May 01;44(9):518-41       67 Citations
2Reprogramming of the tumour microenvironment by stromal PTEN-regulated miR-320. (Bronisz A, Godlewski J, Wallace JA, Merchant AS, Nowicki MO, Mathsyaraja H, Srinivasan R, Trimboli AJ, Martin CK, Li F, Yu L, Fernandez SA, Pécot T, Rosol TJ, Cory S, Hallett M, Park M, Piper MG, Marsh CB, Yee LD, Jimenez RE, Nuovo G, Lawler SE, Chiocca EA, Leone G, Ostrowski MC) Nat Cell Biol 2011 Dec 18;14(2):159-67       210 Citations
1S100A7 enhances mammary tumorigenesis through upregulation of inflammatory pathways. (Nasser MW, Qamri Z, Deol YS, Ravi J, Powell CA, Trikha P, Schwendener RA, Bai XF, Shilo K, Zou X, Leone G, Wolf R, Yuspa SH, Ganju RK) Cancer Res 2012 Feb 01;72(3):604-15       80 Citations
1Global gene expression profiling in mouse plasma cell tumor precursor and bystander cells reveals potential intervention targets for plasma cell neoplasia. (LeGrand J, Park ES, Wang H, Gupta S, Owens JD Jr, Nelson PJ, DuBois W, Bair T, Janz S, Mushinski JF) Blood 2012 Jan 26;119(4):1018-28       5 Citations
2Modulation of gene expression and cell-cycle signaling pathways by the EGFR inhibitor gefitinib (Iressa) in rat urinary bladder cancer. (Lu Y, Liu P, Van den Bergh F, Zellmer V, James M, Wen W, Grubbs CJ, Lubet RA, You M) Cancer Prev Res (Phila) 2012 Feb;5(2):248-59       13 Citations
2Mechanochemical control of mesenchymal condensation and embryonic tooth organ formation. (Mammoto T, Mammoto A, Torisawa YS, Tat T, Gibbs A, Derda R, Mannix R, de Bruijn M, Yung CW, Huh D, Ingber DE) Dev Cell 2011 Oct 18;21(4):758-69       117 Citations
2Evaluation of a microarray-based genotyping assay for the rapid detection of cytochrome P450 2C19 *2 and *3 polymorphisms from whole blood using nanoparticle probes. (Buchan BW, Peterson JF, Cogbill CH, Anderson DK, Ledford JS, White MN, Quigley NB, Jannetto PJ, Ledeboer NA) Am J Clin Pathol 2011 Oct;136(4):604-8       21 Citations
1PITX2 is involved in stress response in cultured human trabecular meshwork cells through regulation of SLC13A3. (Strungaru MH, Footz T, Liu Y, Berry FB, Belleau P, Semina EV, Raymond V, Walter MA) Invest Ophthalmol Vis Sci 2011 Sep 29;52(10):7625-33       19 Citations
1Sox factors transcriptionally regulate ROBO4 gene expression in developing vasculature in zebrafish. (Samant GV, Schupp MO, François M, Moleri S, Kothinti RK, Chun CZ, Sinha I, Sellars S, Leigh N, Pramanik K, Horswill MA, Remadevi I, Li K, Wilkinson GA, Tabatabai NM, Beltrame M, Koopman P, Ramchandran R) J Biol Chem 2011 Sep 02;286(35):30740-7       13 Citations
1Regulation of glycosyltransferase genes in apoptotic breast cancer cells induced by L: -PPMP and cisplatin. (Ma R, Hopp EA, Decker NM, Loucks A, Johnson JR, Moskal J, Basu M, Banerjee S, Basu S) Adv Exp Med Biol 2011;705:621-42       3 Citations
1SAQC: SNP array quality control. (Yang HC, Lin HC, Kang M, Chen CH, Lin CW, Li LH, Wu JY, Chen YT, Pan WH) BMC Bioinformatics 2011 Apr 18;12:100       4 Citations
1Mechanistic basis for the chemopreventive effects of black raspberries at a late stage of rat esophageal carcinogenesis. (Wang LS, Dombkowski AA, Seguin C, Rocha C, Cukovic D, Mukundan A, Henry C, Stoner GD) Mol Carcinog 2011 Apr;50(4):291-300       24 Citations
1RB-pathway disruption in breast cancer: differential association with disease subtypes, disease-specific prognosis and therapeutic response. (Ertel A, Dean JL, Rui H, Liu C, Witkiewicz AK, Knudsen KE, Knudsen ES) Cell Cycle 2010 Oct 15;9(20):4153-63    
1Gene and noncoding RNA regulation underlying photoreceptor protection: microarray study of dietary antioxidant saffron and photobiomodulation in rat retina. (Natoli R, Zhu Y, Valter K, Bisti S, Eells J, Stone J) Mol Vis 2010 Sep 03;16:1801-22       84 Citations
1Tumor antigen analysis in neuroblastoma by serological interrogation of bioinformatic data. (Kohler ME, Johnson BD, Palen K, Chen QR, Khan J, Orentas RJ) Cancer Sci 2010 Nov;101(11):2316-24       6 Citations
1Identification of novel cluster groups in pediatric high-risk B-precursor acute lymphoblastic leukemia with gene expression profiling: correlation with genome-wide DNA copy number alterations, clinical characteristics, and outcome. (Harvey RC, Mullighan CG, Wang X, Dobbin KK, Davidson GS, Bedrick EJ, Chen IM, Atlas SR, Kang H, Ar K, Wilson CS, Wharton W, Murphy M, Devidas M, Carroll AJ, Borowitz MJ, Bowman WP, Downing JR, Relling M, Yang J, Bhojwani D, Carroll WL, Camitta B, Reaman GH, Smith M, Hunger SP, Willman CL) Blood 2010 Dec 02;116(23):4874-84       269 Citations
1Diagnosis of partial body radiation exposure in mice using peripheral blood gene expression profiles. (Meadows SK, Dressman HK, Daher P, Himburg H, Russell JL, Doan P, Chao NJ, Lucas J, Nevins JR, Chute JP) PLoS One 2010 Jul 12;5(7):e11535       36 Citations
1Robust gene network analysis reveals alteration of the STAT5a network as a hallmark of prostate cancer. (Reddy A, Huang CC, Liu H, Delisi C, Nevalainen MT, Szalma S, Bhanot G) Genome Inform 2010;24:139-53       5 Citations
1Use of cross species genomic profiling identifies pathways and genes differentially regulated in prostate cancer cells treated with soy protein isolates or purified genistein. (Liss MA, Schlicht M, Degueme A, Hessner M, Datta MW) Cancer Genomics Proteomics 2010 May-Jun;7(3):111-28       4 Citations
1Ectopic expression of wild-type FGFR3 cooperates with MYC to accelerate development of B-cell lineage neoplasms. (Zingone A, Cultraro CM, Shin DM, Bean CM, Morse HC 3rd, Janz S, Kuehl WM) Leukemia 2010 Jun;24(6):1171-8       14 Citations
1Elevated PIN1 expression by C/EBPalpha-p30 blocks C/EBPalpha-induced granulocytic differentiation through c-Jun in AML. (Pulikkan JA, Dengler V, Peer Zada AA, Kawasaki A, Geletu M, Pasalic Z, Bohlander SK, Ryo A, Tenen DG, Behre G) Leukemia 2010 May;24(5):914-23    
1Functional muscle analysis of the Tcap knockout mouse. (Markert CD, Meaney MP, Voelker KA, Grange RW, Dalley HW, Cann JK, Ahmed M, Bishwokarma B, Walker SJ, Yu SX, Brown M, Lawlor MW, Beggs AH, Childers MK) Hum Mol Genet 2010 Jun 01;19(11):2268-83       21 Citations
1Profiling DNA methylomes from microarray to genome-scale sequencing. (Huang YW, Huang TH, Wang LS) Technol Cancer Res Treat 2010 Apr;9(2):139-47       47 Citations
1An ets2-driven transcriptional program in tumor-associated macrophages promotes tumor metastasis. (Zabuawala T, Taffany DA, Sharma SM, Merchant A, Adair B, Srinivasan R, Rosol TJ, Fernandez S, Huang K, Leone G, Ostrowski MC) Cancer Res 2010 Feb 15;70(4):1323-33       88 Citations
1A microRNA expression signature for cervical cancer prognosis. (Hu X, Schwarz JK, Lewis JS Jr, Huettner PC, Rader JS, Deasy JO, Grigsby PW, Wang X) Cancer Res 2010 Feb 15;70(4):1441-8       241 Citations
2PepD participates in the mycobacterial stress response mediated through MprAB and SigE. (White MJ, He H, Penoske RM, Twining SS, Zahrt TC) J Bacteriol 2010 Mar;192(6):1498-510       41 Citations
1Brucella melitensis, B. neotomae and B. ovis elicit common and distinctive macrophage defense transcriptional responses. (Covert J, Mathison AJ, Eskra L, Banai M, Splitter G) Exp Biol Med (Maywood) 2009 Dec;234(12):1450-67       23 Citations
1Chromosome 7 and 19 trisomy in cultured human neural progenitor cells. (Sareen D, McMillan E, Ebert AD, Shelley BC, Johnson JA, Meisner LF, Svendsen CN) PLoS One 2009 Oct 29;4(10):e7630       51 Citations
1Gene expression classifiers for relapse-free survival and minimal residual disease improve risk classification and outcome prediction in pediatric B-precursor acute lymphoblastic leukemia. (Kang H, Chen IM, Wilson CS, Bedrick EJ, Harvey RC, Atlas SR, Devidas M, Mullighan CG, Wang X, Murphy M, Ar K, Wharton W, Borowitz MJ, Bowman WP, Bhojwani D, Carroll WL, Camitta BM, Reaman GH, Smith MA, Downing JR, Hunger SP, Willman CL) Blood 2010 Feb 18;115(7):1394-405       130 Citations
1Induced expression of drug metabolizing enzymes by preventive agents: role of the antioxidant response element. (Lubet RA, Yao R, Grubbs CJ, You M, Wang Y) Chem Biol Interact 2009 Nov 10;182(1):22-8       12 Citations
4An autoinflammatory disease due to homozygous deletion of the IL1RN locus. (Reddy S, Jia S, Geoffrey R, Lorier R, Suchi M, Broeckel U, Hessner MJ, Verbsky J) N Engl J Med 2009 Jun 04;360(23):2438-44       280 Citations
1Involvement of a membrane-bound class III adenylate cyclase in regulation of anaerobic respiration in Shewanella oneidensis MR-1. (Charania MA, Brockman KL, Zhang Y, Banerjee A, Pinchuk GE, Fredrickson JK, Beliaev AS, Saffarini DA) J Bacteriol 2009 Jul;191(13):4298-306       47 Citations
2Fine mapping of chromosome 6q23-25 region in familial lung cancer families reveals RGS17 as a likely candidate gene. (You M, Wang D, Liu P, Vikis H, James M, Lu Y, Wang Y, Wang M, Chen Q, Jia D, Liu Y, Wen W, Yang P, Sun Z, Pinney SM, Zheng W, Shu XO, Long J, Gao YT, Xiang YB, Chow WH, Rothman N, Petersen GM, de Andrade M, Wu Y, Cunningham JM, Wiest JS, Fain PR, Schwartz AG, Girard L, Gazdar A, Gaba C, Rothschild H, Mandal D, Coons T, Lee J, Kupert E, Seminara D, Minna J, Bailey-Wilson JE, Amos CI, Anderson MW) Clin Cancer Res 2009 Apr 15;15(8):2666-74       59 Citations
1Genetic ablation of caveolin-1 drives estrogen-hypersensitivity and the development of DCIS-like mammary lesions. (Mercier I, Casimiro MC, Zhou J, Wang C, Plymire C, Bryant KG, Daumer KM, Sotgia F, Bonuccelli G, Witkiewicz AK, Lin J, Tran TH, Milliman J, Frank PG, Jasmin JF, Rui H, Pestell RG, Lisanti MP) Am J Pathol 2009 Apr;174(4):1172-90       47 Citations
1Loss of caveolin-3 induces a lactogenic microenvironment that is protective against mammary tumor formation. (Sotgia F, Casimiro MC, Bonuccelli G, Liu M, Whitaker-Menezes D, Er O, Daumer KM, Mercier I, Witkiewicz AK, Minetti C, Capozza F, Gormley M, Quong AA, Rui H, Frank PG, Milliman JN, Knudsen ES, Zhou J, Wang C, Pestell RG, Lisanti MP) Am J Pathol 2009 Feb;174(2):613-29       16 Citations
1E2f3a and E2f3b contribute to the control of cell proliferation and mouse development. (Chong JL, Tsai SY, Sharma N, Opavsky R, Price R, Wu L, Fernandez SA, Leone G) Mol Cell Biol 2009 Jan;29(2):414-24       58 Citations
1Effects of a black raspberry diet on gene expression in the rat esophagus. (Lechner JF, Reen RK, Dombkowski AA, Cukovic D, Salagrama S, Wang LS, Stoner GD) Nutr Cancer 2008;60 Suppl 1:61-9       20 Citations
1Quorum sensing primes the oxidative stress response in the insect endosymbiont, Sodalis glossinidius. (Pontes MH, Babst M, Lochhead R, Oakeson K, Smith K, Dale C) PLoS One 2008;3(10):e3541       30 Citations
1The effects of acute 17beta-estradiol treatment on gene expression in the young female mouse hippocampus. (Pechenino AS, Frick KM) Neurobiol Learn Mem 2009 Mar;91(3):315-22       27 Citations
2Snrk-1 is involved in multiple steps of angioblast development and acts via notch signaling pathway in artery-vein specification in vertebrates. (Chun CZ, Kaur S, Samant GV, Wang L, Pramanik K, Garnaas MK, Li K, Field L, Mukhopadhyay D, Ramchandran R) Blood 2009 Jan 29;113(5):1192-9       22 Citations
1Zebrafish as a developmental model organism for pediatric research. (Veldman MB, Lin S) Pediatr Res 2008 Nov;64(5):470-6       69 Citations
1Detection of 11 common viral and bacterial pathogens causing community-acquired pneumonia or sepsis in asymptomatic patients by using a multiplex reverse transcription-PCR assay with manual (enzyme hybridization) or automated (electronic microarray) detection. (Kumar S, Wang L, Fan J, Kraft A, Bose ME, Tiwari S, Van Dyke M, Haigis R, Luo T, Ghosh M, Tang H, Haghnia M, Mather EL, Weisburg WG, Henrickson KJ) J Clin Microbiol 2008 Sep;46(9):3063-72       74 Citations
1Global expression profiling identifies a novel biosignature for protein aggregation R120GCryAB cardiomyopathy in mice. (Rajasekaran NS, Firpo MA, Milash BA, Weiss RB, Benjamin IJ) Physiol Genomics 2008 Oct 08;35(2):165-72       21 Citations
1Quantitative trait loci mapping. (Xiong DH, Liu JF, Guo YF, Guo Y, Yang TL, Jiang H, Chen Y, Yang F, Recker RR, Deng HW) Methods Mol Biol 2008;455:203-35       2 Citations
3Molecular networks in Dahl salt-sensitive hypertension based on transcriptome analysis of a panel of consomic rats. (Liang M, Lee NH, Wang H, Greene AS, Kwitek AE, Kaldunski ML, Luu TV, Frank BC, Bugenhagen S, Jacob HJ, Cowley AW Jr) Physiol Genomics 2008 Jun 12;34(1):54-64       38 Citations
1Type IV pili in Francisella tularensis: roles of pilF and pilT in fiber assembly, host cell adherence, and virulence. (Chakraborty S, Monfett M, Maier TM, Benach JL, Frank DW, Thanassi DG) Infect Immun 2008 Jul;76(7):2852-61       57 Citations
2High perfusion pressure accelerates renal injury in salt-sensitive hypertension. (Mori T, Polichnowski A, Glocka P, Kaldunski M, Ohsaki Y, Liang M, Cowley AW Jr) J Am Soc Nephrol 2008 Aug;19(8):1472-82       72 Citations
1Targeted deletion of Prkar1a reveals a role for protein kinase A in mesenchymal-to-epithelial transition. (Nadella KS, Jones GN, Trimboli A, Stratakis CA, Leone G, Kirschner LS) Cancer Res 2008 Apr 15;68(8):2671-7       28 Citations
1Genetic analysis of congenital cystic adenomatoid malformation reveals a novel pulmonary gene: fatty acid binding protein-7 (brain type). (Wagner AJ, Stumbaugh A, Tigue Z, Edmondson J, Paquet AC, Farmer DL, Hawgood S) Pediatr Res 2008 Jul;64(1):11-6       33 Citations
1Genotyping platforms for mass-throughput genotyping with SNPs, including human genome-wide scans. (Maresso K, Broeckel U) Adv Genet 2008;60:107-39       28 Citations
1Enhanced susceptibility to chemical induction of ovarian tumors in mice with a germ line p53 mutation. (Wang Y, Zhang Z, Lu Y, Yao R, Jia D, Wen W, LaRegina M, Crist K, Lubet R, You M) Mol Cancer Res 2008 Jan;6(1):99-109       8 Citations
1MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis. (Tian Z, Greene AS, Pietrusz JL, Matus IR, Liang M) Genome Res 2008 Mar;18(3):404-11       182 Citations
1Identification of novel susceptibility genes in childhood-onset systemic lupus erythematosus using a uniquely designed candidate gene pathway platform. (Jacob CO, Reiff A, Armstrong DL, Myones BL, Silverman E, Klein-Gitelman M, McCurdy D, Wagner-Weiner L, Nocton JJ, Solomon A, Zidovetzki R) Arthritis Rheum 2007 Dec;56(12):4164-73       62 Citations
1Exogenous mycoplasmal p37 protein alters gene expression, growth and morphology of prostate cancer cells. (Goodison S, Nakamura K, Iczkowski KA, Anai S, Boehlein SK, Rosser CJ) Cytogenet Genome Res 2007;118(2-4):204-13       21 Citations
1Microarray analysis reveals distinctive signaling between the bed nucleus of the stria terminalis, nucleus accumbens, and dorsal striatum. (Olsen CM, Huang Y, Goodwin S, Ciobanu DC, Lu L, Sutter TR, Winder DG) Physiol Genomics 2008 Feb 19;32(3):283-98       13 Citations
2Molecular targets of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) within the zebrafish ovary: insights into TCDD-induced endocrine disruption and reproductive toxicity. (Heiden TC, Struble CA, Rise ML, Hessner MJ, Hutz RJ, Carvan MJ 3rd) Reprod Toxicol 2008 Jan;25(1):47-57       45 Citations
1Quantitative measurement of pathogen-specific human memory T cell repertoire diversity using a CDR3 beta-specific microarray. (Wang X, Jia S, Meyer L, Yassai MB, Naumov YN, Gorski J, Hessner MJ) BMC Genomics 2007 Sep 19;8:329       3 Citations
1Profiling microdissected epithelium and stroma to model genomic signatures for cervical carcinogenesis accommodating for covariates. (Gius D, Funk MC, Chuang EY, Feng S, Huettner PC, Nguyen L, Bradbury CM, Mishra M, Gao S, Buttin BM, Cohn DE, Powell MA, Horowitz NS, Whitcomb BP, Rader JS) Cancer Res 2007 Aug 01;67(15):7113-23       62 Citations
2Distinct profiles of endothelial gene expression in hyperpermeable regions of the porcine aortic arch and thoracic aorta. (LaMack JA, Himburg HA, Friedman MH) Atherosclerosis 2007 Dec;195(2):e35-41       11 Citations
1Agreement in breast cancer classification between microarray and quantitative reverse transcription PCR from fresh-frozen and formalin-fixed, paraffin-embedded tissues. (Mullins M, Perreard L, Quackenbush JF, Gauthier N, Bayer S, Ellis M, Parker J, Perou CM, Szabo A, Bernard PS) Clin Chem 2007 Jul;53(7):1273-9       56 Citations
1Apolipoprotein E modifies the CNS response to injury via a histamine-mediated pathway. (Mace BE, Wang H, Lynch JR, Moss J, Sullivan P, Colton H, Morgan K, Renauld JC, Laskowitz DT) Neurol Res 2007 Apr;29(3):243-50       11 Citations
1Unique requirement for Rb/E2F3 in neuronal migration: evidence for cell cycle-independent functions. (McClellan KA, Ruzhynsky VA, Douda DN, Vanderluit JL, Ferguson KL, Chen D, Bremner R, Park DS, Leone G, Slack RS) Mol Cell Biol 2007 Jul;27(13):4825-43       66 Citations
1Serum from mice immunized in the context of Treg inhibition identifies DEK as a neuroblastoma tumor antigen. (Zheng J, Kohler ME, Chen Q, Weber J, Khan J, Johnson BD, Orentas RJ) BMC Immunol 2007 Mar 30;8:4       11 Citations
1Gene expression profiling of chemically induced rat bladder tumors. (Yao R, Yi Y, Grubbs CJ, Lubet RA, You M) Neoplasia 2007 Mar;9(3):207-21       28 Citations
1Potassium channel gene expression in the rat cochlear nucleus. (Friedland DR, Eernisse R, Popper P) Hear Res 2007 Jun;228(1-2):31-43       14 Citations
1Gene expression analysis of gallium-resistant and gallium-sensitive lymphoma cells reveals a role for metal-responsive transcription factor-1, metallothionein-2A, and zinc transporter-1 in modulating the antineoplastic activity of gallium nitrate. (Yang M, Kroft SH, Chitambar CR) Mol Cancer Ther 2007 Feb;6(2):633-43       33 Citations
1Microarray and real-time PCR analysis of adrenal gland gene expression in the 7-day-old rat: effects of hypoxia from birth. (Bruder ED, Lee JJ, Widmaier EP, Raff H) Physiol Genomics 2007 Apr 24;29(2):193-200       16 Citations
1A gene expression signature predicts survival of patients with stage I non-small cell lung cancer. (Lu Y, Lemon W, Liu PY, Yi Y, Morrison C, Yang P, Sun Z, Szoke J, Gerald WL, Watson M, Govindan R, You M) PLoS Med 2006 Dec;3(12):e467       232 Citations
1The interaction of adenovirus E1A with p300 family members modulates cellular gene expression to reduce tumorigenicity. (Miura TA, Cook JL, Potter TA, Ryan S, Routes JM) J Cell Biochem 2007 Mar 01;100(4):929-40       5 Citations
1Molecular genetic studies of gene identification for osteoporosis: a 2004 update. (Liu YJ, Shen H, Xiao P, Xiong DH, Li LH, Recker RR, Deng HW) J Bone Miner Res 2006 Oct;21(10):1511-35       101 Citations
1Potential role of Jun activation domain-binding protein 1 as a negative regulator of p27kip1 in pancreatic adenocarcinoma. (Kouvaraki MA, Korapati AL, Rassidakis GZ, Tian L, Zhang Q, Chiao P, Ho L, Evans DB, Claret FX) Cancer Res 2006 Sep 01;66(17):8581-9       51 Citations
1Physiologic and genomic analyses of nutrition-ethanol interactions during gestation: Implications for fetal ethanol toxicity. (Shankar K, Hidestrand M, Liu X, Xiao R, Skinner CM, Simmen FA, Badger TM, Ronis MJ) Exp Biol Med (Maywood) 2006 Sep;231(8):1379-97       37 Citations
1Comprehensive quality control utilizing the prehybridization third-dye image leads to accurate gene expression measurements by cDNA microarrays. (Wang X, Jia S, Meyer L, Xiang B, Chen LY, Jiang N, Moreno C, Jacob HJ, Ghosh S, Hessner MJ) BMC Bioinformatics 2006 Aug 14;7:378       8 Citations
1Differentially expressed genes in the rat cochlear nucleus. (Friedland DR, Popper P, Eernisse R, Cioffi JA) Neuroscience 2006 Oct 27;142(3):753-68       16 Citations
1Dickkopf homologs in squamous mucosa of esophagitis patients are overexpressed compared with Barrett's patients and healthy controls. (Ali I, Rafiee P, Hogan WJ, Jacob HJ, Komorowski RA, Haasler GB, Shaker R) Am J Gastroenterol 2006 Jul;101(7):1437-48       17 Citations
1p53 Transgenic mice are highly susceptible to 4-nitroquinoline-1-oxide-induced oral cancer. (Zhang Z, Wang Y, Yao R, Li J, Lubet RA, You M) Mol Cancer Res 2006 Jun;4(6):401-10       22 Citations
1CDDO-Imidazolide inhibits growth and survival of c-Myc-induced mouse B cell and plasma cell neoplasms. (Han SS, Peng L, Chung ST, DuBois W, Maeng SH, Shaffer AL, Sporn MB, Janz S) Mol Cancer 2006 Jun 07;5:22       15 Citations
1Assessing the reliability of amplified RNA used in microarrays: a DUMB table approach. (Bearden ED, Simpson PM, Peterson CA, Beggs ML) Appl Bioinformatics 2006;5(2):67-76       1 Citation
1Gene expression patterns in advanced human cervical cancer. (Grigsby PW, Watson M, Powell MA, Zhang Z, Rader JS) Int J Gynecol Cancer 2006 Mar-Apr;16(2):562-7       27 Citations
1Identification of chromosomal alterations important in the development of cervical intraepithelial neoplasia and invasive carcinoma using alignment of DNA microarray data. (Fitzpatrick MA, Funk MC, Gius D, Huettner PC, Zhang Z, Bidder M, Ma D, Powell MA, Rader JS) Gynecol Oncol 2006 Nov;103(2):458-62       18 Citations
1Organ-specific expression profiles of rat mammary gland, liver, and lung tissues treated with targretin, 9-cis retinoic acid, and 4-hydroxyphenylretinamide. (Wang Y, Yao R, Maciag A, Grubbs CJ, Lubet RA, You M) Mol Cancer Ther 2006 Apr;5(4):1060-72       22 Citations
1Natural malaria infection in Anopheles gambiae is regulated by a single genomic control region. (Riehle MM, Markianos K, Niaré O, Xu J, Li J, Touré AM, Podiougou B, Oduol F, Diawara S, Diallo M, Coulibaly B, Ouatara A, Kruglyak L, Traoré SF, Vernick KD) Science 2006 Apr 28;312(5773):577-9       210 Citations
1Classification and risk stratification of invasive breast carcinomas using a real-time quantitative RT-PCR assay. (Perreard L, Fan C, Quackenbush JF, Mullins M, Gauthier NP, Nelson E, Mone M, Hansen H, Buys SS, Rasmussen K, Orrico AR, Dreher D, Walters R, Parker J, Hu Z, He X, Palazzo JP, Olopade OI, Szabo A, Perou CM, Bernard PS) Breast Cancer Res 2006;8(2):R23       155 Citations
1Hepatocyte nuclear factor 4alpha is essential for embryonic development of the mouse colon. (Garrison WD, Battle MA, Yang C, Kaestner KH, Sladek FM, Duncan SA) Gastroenterology 2006 Apr;130(4):1207-20       118 Citations
1Aberrant promoter methylation and silencing of the POU2F3 gene in cervical cancer. (Zhang Z, Huettner PC, Nguyen L, Bidder M, Funk MC, Li J, Rader JS) Oncogene 2006 Aug 31;25(39):5436-45       28 Citations
1MprAB is a stress-responsive two-component system that directly regulates expression of sigma factors SigB and SigE in Mycobacterium tuberculosis. (He H, Hovey R, Kane J, Singh V, Zahrt TC) J Bacteriol 2006 Mar;188(6):2134-43       111 Citations
1Three-color cDNA microarrays with prehybridization quality control yield gene expression data comparable to that of commercial platforms. (Hessner MJ, Xiang B, Jia S, Geoffrey R, Holmes S, Meyer L, Muheisen S, Wang X) Physiol Genomics 2006 Mar 13;25(1):166-78       5 Citations
1Myospryn is a direct transcriptional target for MEF2A that encodes a striated muscle, alpha-actinin-interacting, costamere-localized protein. (Durham JT, Brand OM, Arnold M, Reynolds JG, Muthukumar L, Weiler H, Richardson JA, Naya FJ) J Biol Chem 2006 Mar 10;281(10):6841-9       36 Citations
1Efficacy of the farnesyltransferase inhibitor R115777 in a rat mammary tumor model: role of Ha-ras mutations and use of microarray analysis in identifying potential targets. (Yao R, Wang Y, Lu Y, Lemon WJ, End DW, Grubbs CJ, Lubet RA, You M) Carcinogenesis 2006 Jul;27(7):1420-31       8 Citations
3Fetomaternal cross talk in the placental vascular bed: control of coagulation by trophoblast cells. (Sood R, Kalloway S, Mast AE, Hillard CJ, Weiler H) Blood 2006 Apr 15;107(8):3173-80       69 Citations
1Role of the serum response factor in regulating contractile apparatus gene expression and sarcomeric integrity in cardiomyocytes. (Balza RO Jr, Misra RP) J Biol Chem 2006 Mar 10;281(10):6498-510       72 Citations
1The role of microRNA genes in papillary thyroid carcinoma. (He H, Jazdzewski K, Li W, Liyanarachchi S, Nagy R, Volinia S, Calin GA, Liu CG, Franssila K, Suster S, Kloos RT, Croce CM, de la Chapelle A) Proc Natl Acad Sci U S A 2005 Dec 27;102(52):19075-80       990 Citations
1Micro-array analysis of the effect of post-transurethral bladder tumor resection urine on transforming growth factor-beta1 dependent gene expression in transitional cell carcinoma. (Zhang G, Cao Y, Xu Y, See WA) Urol Oncol 2005 Nov-Dec;23(6):413-8       1 Citation
1Molecular and cytological features of the mouse B-cell lymphoma line iMycEmu-1. (Han SS, Shaffer AL, Peng L, Chung ST, Lim JH, Maeng S, Kim JS, McNeil N, Ried T, Staudt LM, Janz S) Mol Cancer 2005 Nov 09;4:40       5 Citations
1Specific pharmacological dimerization of KDR in lentivirally transduced human hematopoietic cells activates anti-apoptotic and proliferative mechanisms. (Siatskas C, Underwood J, Ramezani A, Hawley RG, Medin JA) FASEB J 2005 Oct;19(12):1752-4       9 Citations
1Tumor-associated alterations in caspase-14 expression in epithelial malignancies. (Krajewska M, Kim H, Shin E, Kennedy S, Duffy MJ, Wong YF, Marr D, Mikolajczyk J, Shabaik A, Meinhold-Heerlein I, Huang X, Banares S, Hedayat H, Reed JC, Krajewski S) Clin Cancer Res 2005 Aug 01;11(15):5462-71       48 Citations
1Hotelling's T2 multivariate profiling for detecting differential expression in microarrays. (Lu Y, Liu PY, Xiao P, Deng HW) Bioinformatics 2005 Jul 15;21(14):3105-13       71 Citations
1Changes in gene expression following high-temperature adaptation in experimentally evolved populations of E. coli. (Riehle MM, Bennett AF, Long AD) Physiol Biochem Zool 2005 May-Jun;78(3):299-315       19 Citations
3Transcriptome analysis and kidney research: toward systems biology. (Liang M, Cowley AW Jr, Hessner MJ, Lazar J, Basile DP, Pietrusz JL) Kidney Int 2005 Jun;67(6):2114-22       20 Citations
1Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments. (Liu H, Tarima S, Borders AS, Getchell TV, Getchell ML, Stromberg AJ) BMC Bioinformatics 2005 Apr 25;6:106       40 Citations
1Tissue-specific transcriptome responses in rats with early streptozotocin-induced diabetes. (Knoll KE, Pietrusz JL, Liang M) Physiol Genomics 2005 Apr 14;21(2):222-9       46 Citations
1Overexpression of tropomysin-related kinase B in metastatic human pancreatic cancer cells. (Sclabas GM, Fujioka S, Schmidt C, Li Z, Frederick WA, Yang W, Yokoi K, Evans DB, Abbruzzese JL, Hess KR, Zhang W, Fidler IJ, Chiao PJ) Clin Cancer Res 2005 Jan 15;11(2 Pt 1):440-9       104 Citations
1A two-step strategy for detecting differential gene expression in cDNA microarray data. (Lu Y, Zhu J, Liu P) Curr Genet 2005 Feb;47(2):121-31       9 Citations
2Identification of persistently altered gene expression in the kidney after functional recovery from ischemic acute renal failure. (Basile DP, Fredrich K, Alausa M, Vio CP, Liang M, Rieder MR, Greene AS, Cowley AW Jr) Am J Physiol Renal Physiol 2005 May;288(5):F953-63       79 Citations
1Differential effects of delivery of omega-3 fatty acids to human cancer cells by low-density lipoproteins versus albumin. (Edwards IJ, Berquin IM, Sun H, O'flaherty JT, Daniel LW, Thomas MJ, Rudel LL, Wykle RL, Chen YQ) Clin Cancer Res 2004 Dec 15;10(24):8275-83       30 Citations
1Discriminate gene lists derived from cDNA microarray profiles of limited samples permit distinguishing mesenchymal neoplasia ex vivo. (Joyner DE, Wade ML, Szabo A, Bastar J, Coffin CM, Albritton KH, Bernard PS, Randall RL) J Cancer Res Clin Oncol 2005 Mar;131(3):137-46       5 Citations
1Regulation and function of trefoil factor family 3 expression in the biliary tree. (Nozaki I, Lunz JG 3rd, Specht S, Park JI, Giraud AS, Murase N, Demetris AJ) Am J Pathol 2004 Dec;165(6):1907-20       35 Citations
1Gene expression in the lung of p53 mutant mice exposed to cigarette smoke. (Izzotti A, Cartiglia C, Longobardi M, Bagnasco M, Merello A, You M, Lubet RA, De Flora S) Cancer Res 2004 Dec 01;64(23):8566-72       37 Citations
1IFI16 is an essential mediator of growth inhibition, but not differentiation, induced by the leukemia inhibitory factor/JAK/STAT pathway in medullary thyroid carcinoma cells. (Kim EJ, Park JI, Nelkin BD) J Biol Chem 2005 Feb 11;280(6):4913-20       40 Citations
1Involvement of eotaxin, eosinophils, and pancreatic predisposition in development of type 1 diabetes mellitus in the BioBreeding rat. (Hessner MJ, Wang X, Meyer L, Geoffrey R, Jia S, Fuller J, Lernmark A, Ghosh S) J Immunol 2004 Dec 01;173(11):6993-7002       46 Citations
1Altered gene expression profile in mouse bladder cancers induced by hydroxybutyl(butyl)nitrosamine. (Yao R, Lemon WJ, Wang Y, Grubbs CJ, Lubet RA, You M) Neoplasia 2004 Sep-Oct;6(5):569-77       26 Citations
1A novel approach for high-quality microarray processing using third-dye array visualization technology. (Wang X, Jiang N, Feng X, Xie Y, Tonellato PJ, Ghosh S, Hessner MJ) IEEE Trans Nanobioscience 2003 Dec;2(4):193-201       15 Citations
1Sinusoidal length oscillation- and receptor-mediated mRNA expression of myosin isoforms and alpha-SM actin in airway smooth muscle. (Wahl M, Eddinger TJ, Hai CM) Am J Physiol Cell Physiol 2004 Dec;287(6):C1697-708       12 Citations
1Immobilized probe and glass surface chemistry as variables in microarray fabrication. (Hessner MJ, Meyer L, Tackes J, Muheisen S, Wang X) BMC Genomics 2004 Aug 04;5(1):53       35 Citations
1Statistical modeling for selecting housekeeper genes. (Szabo A, Perou CM, Karaca M, Perreard L, Palais R, Quackenbush JF, Bernard PS) Genome Biol 2004;5(8):R59       154 Citations
2Identification of a low affinity mannose 6-phosphate-binding site in domain 5 of the cation-independent mannose 6-phosphate receptor. (Reddy ST, Chai W, Childs RA, Page JD, Feizi T, Dahms NM) J Biol Chem 2004 Sep 10;279(37):38658-67       55 Citations
1Gene expression profiling of potential PPARgamma target genes in mouse aorta. (Keen HL, Ryan MJ, Beyer A, Mathur S, Scheetz TE, Gackle BD, Faraci FM, Casavant TL, Sigmund CD) Physiol Genomics 2004 Jun 17;18(1):33-42       43 Citations
1Microarray analysis of retinoid-dependent gene activity during rat embryogenesis: increased collagen fibril production in a model of retinoid insufficiency. (Flentke GR, Baker MW, Docterman KE, Power S, Lough J, Smith SM) Dev Dyn 2004 Apr;229(4):886-98       14 Citations
2Utilization of a labeled tracking oligonucleotide for visualization and quality control of spotted 70-mer arrays. (Hessner MJ, Singh VK, Wang X, Khan S, Tschannen MR, Zahrt TC) BMC Genomics 2004 Feb 09;5(1):12       32 Citations
1Cancer chemopreventive activity of a mixture of Chinese herbs (antitumor B) in mouse lung tumor models. (Zhang Z, Wang Y, Yao R, Li J, Yan Y, La Regina M, Lemon WL, Grubbs CJ, Lubet RA, You M) Oncogene 2004 May 06;23(21):3841-50       53 Citations
1Interactions between hepatic Mrp4 and Sult2a as revealed by the constitutive androstane receptor and Mrp4 knockout mice. (Assem M, Schuetz EG, Leggas M, Sun D, Yasuda K, Reid G, Zelcer N, Adachi M, Strom S, Evans RM, Moore DD, Borst P, Schuetz JD) J Biol Chem 2004 May 21;279(21):22250-7       206 Citations
1The design of a gene chip for functional immunological studies on a high-quality control platform. (Waukau J, Jailwala P, Wang Y, Khoo HJ, Ghosh S, Wang X, Hessner MJ) Ann N Y Acad Sci 2003 Nov;1005:284-7       4 Citations
1Difference in gene expression profiles between human CD4+CD25+ and CD4+CD25- T cells. (Pati N, Ghosh S, Hessner MJ, Khoo HJ, Wang X) Ann N Y Acad Sci 2003 Nov;1005:279-83       6 Citations
1Molecular profiling of mouse lung tumors: association with tumor progression, lung development, and human lung adenocarcinomas. (Bonner AE, Lemon WJ, Devereux TR, Lubet RA, You M) Oncogene 2004 Feb 05;23(5):1166-76       81 Citations
1Multivariate exploratory tools for microarray data analysis. (Szabo A, Boucher K, Jones D, Tsodikov AD, Klebanov LB, Yakovlev AY) Biostatistics 2003 Oct;4(4):555-67       31 Citations
1COMBO-FISH: specific labeling of nondenatured chromatin targets by computer-selected DNA oligonucleotide probe combinations. (Hausmann M, Winkler R, Hildenbrand G, Finsterle J, Weisel A, Rapp A, Schmitt E, Janz S, Cremer C) Biotechniques 2003 Sep;35(3):564-70, 572-7       43 Citations
1Differential expression and clinical significance of tyrosine-phosphorylated STAT3 in ALK+ and ALK- anaplastic large cell lymphoma. (Khoury JD, Medeiros LJ, Rassidakis GZ, Yared MA, Tsioli P, Leventaki V, Schmitt-Graeff A, Herling M, Amin HM, Lai R) Clin Cancer Res 2003 Sep 01;9(10 Pt 1):3692-9       90 Citations
1Quantitative quality control in microarray experiments and the application in data filtering, normalization and false positive rate prediction. (Wang X, Hessner MJ, Wu Y, Pati N, Ghosh S) Bioinformatics 2003 Jul 22;19(11):1341-7       65 Citations
2Consomic rats for the identification of genes and pathways underlying cardiovascular disease. (Roman RJ, Cowley AW Jr, Greene A, Kwitek AE, Tonellato PJ, Jacob HJ) Cold Spring Harb Symp Quant Biol 2002;67:309-15       19 Citations
1DNA expression analysis: serial analysis of gene expression, microarrays and kidney disease. (Hayden PS, El-Meanawy A, Schelling JR, Sedor JR) Curr Opin Nephrol Hypertens 2003 Jul;12(4):407-14       15 Citations
2Quantitative assessment of the importance of dye switching and biological replication in cDNA microarray studies. (Liang M, Briggs AG, Rute E, Greene AS, Cowley AW Jr) Physiol Genomics 2003 Aug 15;14(3):199-207       32 Citations
1Use of a three-color cDNA microarray platform to measure and control support-bound probe for improved data quality and reproducibility. (Hessner MJ, Wang X, Khan S, Meyer L, Schlicht M, Tackes J, Datta MW, Jacob HJ, Ghosh S) Nucleic Acids Res 2003 Jun 01;31(11):e60       42 Citations
2Gene expression reveals vulnerability to oxidative stress and interstitial fibrosis of renal outer medulla to nonhypertensive elevations of ANG II. (Yuan B, Liang M, Yang Z, Rute E, Taylor N, Olivier M, Cowley AW Jr) Am J Physiol Regul Integr Comp Physiol 2003 May;284(5):R1219-30       26 Citations
1Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature. (Riehle MM, Bennett AF, Lenski RE, Long AD) Physiol Genomics 2003 Jun 24;14(1):47-58       63 Citations
1Microarray analysis of mRNA levels from RAW264.7 macrophages infected with Brucella abortus. (Eskra L, Mathison A, Splitter G) Infect Immun 2003 Mar;71(3):1125-33       85 Citations
1Three color cDNA microarrays: quantitative assessment through the use of fluorescein-labeled probes. (Hessner MJ, Wang X, Hulse K, Meyer L, Wu Y, Nye S, Guo SW, Ghosh S) Nucleic Acids Res 2003 Feb 15;31(4):e14       52 Citations
1Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays. (Wang HY, Malek RL, Kwitek AE, Greene AS, Luu TV, Behbahani B, Frank B, Quackenbush J, Lee NH) Genome Biol 2003;4(1):R5       119 Citations
2Insights into Dahl salt-sensitive hypertension revealed by temporal patterns of renal medullary gene expression. (Liang M, Yuan B, Rute E, Greene AS, Olivier M, Cowley AW Jr) Physiol Genomics 2003 Feb 06;12(3):229-37       53 Citations
1Identification of gene expression profiles that segregate patients with childhood leukemia. (Moos PJ, Raetz EA, Carlson MA, Szabo A, Smith FE, Willman C, Wei Q, Hunger SP, Carroll WL) Clin Cancer Res 2002 Oct;8(10):3118-30       82 Citations
2Regulation of MDR-1 (P-glycoprotein) by cyclooxygenase-2. (Patel VA, Dunn MJ, Sorokin A) J Biol Chem 2002 Oct 11;277(41):38915-20       175 Citations
1Expression profile of differentially-regulated genes during progression of androgen-independent growth in human prostate cancer cells. (Karan D, Kelly DL, Rizzino A, Lin MF, Batra SK) Carcinogenesis 2002 Jun;23(6):967-75       119 Citations
1Radiation hybrid mapping of 70 rat genes from a data set of differentially expressed genes. (Wallace CA, Ali S, Glazier AM, Norsworthy PJ, Carlos DC, Scott J, Freeman TC, Stanton LW, Kwitek AE, Aitman TJ) Mamm Genome 2002 Apr;13(4):194-7       7 Citations
2Renal medullary genes in salt-sensitive hypertension: a chromosomal substitution and cDNA microarray study. (Liang M, Yuan B, Rute E, Greene AS, Zou AP, Soares P, MCQuestion GD, Slocum GR, Jacob HJ, Cowley AW Jr) Physiol Genomics 2002 Feb 28;8(2):139-49       47 Citations
1Multivariate approach for selecting sets of differentially expressed genes. (Chilingaryan A, Gevorgyan N, Vardanyan A, Jones D, Szabo A) Math Biosci 2002 Mar;176(1):59-69       30 Citations
1Variable selection and pattern recognition with gene expression data generated by the microarray technology. (Szabo A, Boucher K, Carroll WL, Klebanov LB, Tsodikov AD, Yakovlev AY) Math Biosci 2002 Mar;176(1):71-98       50 Citations
1Induction of chondrocyte growth arrest by FGF: transcriptional and cytoskeletal alterations. (Rozenblatt-Rosen O, Mosonego-Ornan E, Sadot E, Madar-Shapiro L, Sheinin Y, Ginsberg D, Yayon A) J Cell Sci 2002 Feb 01;115(Pt 3):553-62       52 Citations
1Adjustments and measures of differential expression for microarray data. (Tsodikov A, Szabo A, Jones D) Bioinformatics 2002 Feb;18(2):251-60       47 Citations
1Upregulation of collagens detected by gene array in a model of flow-induced pulmonary vascular remodeling. (Medhora M, Bousamra M 2nd, Zhu D, Somberg L, Jacobs ER) Am J Physiol Heart Circ Physiol 2002 Feb;282(2):H414-22       37 Citations
1Gene expression profiling. Methods and clinical applications in oncology. (Raetz EA, Moos PJ, Szabo A, Carroll WL) Hematol Oncol Clin North Am 2001 Oct;15(5):911-30, ix    
1Role for E2F in control of both DNA replication and mitotic functions as revealed from DNA microarray analysis. (Ishida S, Huang E, Zuzan H, Spang R, Leone G, West M, Nevins JR) Mol Cell Biol 2001 Jul;21(14):4684-99       469 Citations
1Genetic architecture of thermal adaptation in Escherichia coli. (Riehle MM, Bennett AF, Long AD) Proc Natl Acad Sci U S A 2001 Jan 16;98(2):525-30       187 Citations
1Alcohol consumption and cigarette smoking increase the frequency of p53 mutations in non-small cell lung cancer. (Ahrendt SA, Chow JT, Yang SC, Wu L, Zhang MJ, Jen J, Sidransky D) Cancer Res 2000 Jun 15;60(12):3155-9       126 Citations