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Andrew S. Nencka PhD

Andrew S. Nencka PhD profile photo picture

Center Associate Director, Associate Professor

Institution: Medical College of Wisconsin
Department: Radiology
Division: Research

Member of the Cancer Center


Research Experience

  • Data Interpretation, Statistical
  • Echo-Planar Imaging
  • Image Enhancement
  • Image Processing, Computer-Assisted
  • Magnetic Resonance Imaging
  • Models, Statistical
  • Monte Carlo Method
  • Regression Analysis
  • Leadership Positions

  • Chair, Faculty IT Committee, 2014-2016
  • Chair, Research MRI Safety Committee, 2012-Present
  • Secretary, Faculty IT Committee, 2016-Present
  • Associate Director, Center for Imaging Research, 2016-Present
  • Publications (78)

  • Neuroticism in temporal lobe epilepsy is associated with altered limbic-frontal lobe resting-state functional connectivity. (Rivera Bonet CN, Hwang G, Hermann B, Struck AF, J Cook C, A Nair V, Mathis J, Allen L, Almane DN, Arkush K, Birn R, Conant LL, DeYoe EA, Felton E, Maganti R, Nencka A, Raghavan M, Shah U, Sosa VN, Ustine C, Prabhakaran V, Binder JR, Meyerand ME) Epilepsy Behav 2020 Sep;110:107172 PMID: 32554180 PMCID: PMC7483612 SCOPUS ID: 2-s2.0-85086476142 06/20/2020    
  • Radiomic Features of Multiparametric MRI Present Stable Associations With Analogous Histological Features in Patients With Brain Cancer. (Bobholz SA, Lowman AK, Barrington A, Brehler M, McGarry S, Cochran EJ, Connelly J, Mueller WM, Agarwal M, O'Neill D, Nencka AS, Banerjee A, LaViolette PS) Tomography 2020 06;6(2):160-169 PMID: 32548292 PMCID: PMC7289245 SCOPUS ID: 2-s2.0-85086686895 06/18/2020       1 Citation
  • Functional connectivity and structural analysis of trial spinal cord stimulation responders in failed back surgery syndrome. (Pahapill PA, Chen G, Arocho-Quinones EV, Nencka AS, Li SJ) PLoS One 2020;15(2):e0228306 PMID: 32074111 PMCID: PMC7029839 SCOPUS ID: 2-s2.0-85079521450 02/20/2020    
  • Brain aging in temporal lobe epilepsy: Chronological, structural, and functional. (Hwang G, Hermann B, Nair VA, Conant LL, Dabbs K, Mathis J, Cook CJ, Rivera-Bonet CN, Mohanty R, Zhao G, Almane DN, Nencka A, Felton E, Struck AF, Birn R, Maganti R, Humphries CJ, Raghavan M, DeYoe EA, Bendlin BB, Prabhakaran V, Binder JR, Meyerand ME) Neuroimage Clin 2020;25:102183 PMID: 32058319 PMCID: PMC7016276 SCOPUS ID: 2-s2.0-85079141146 02/15/2020    
  • The Association Between Persistent White-Matter Abnormalities and Repeat Injury After Sport-Related Concussion. (Brett BL, Wu YC, Mustafi SM, Saykin AJ, Koch KM, Nencka AS, Giza CC, Goldman J, Guskiewicz KM, Mihalik JP, Duma SM, Broglio SP, McAllister TW, McCrea MA, Meier TB) Front Neurol 2019;10:1345 PMID: 32038451 PMCID: PMC6990104 SCOPUS ID: 2-s2.0-85079132454 02/11/2020    
  • Just Another CNN in K-space to De-Alias N Individual Excited Locations Simultaneously (JACKDANIELS) (Sampada Bhave, Volkan E Arpinar, Nikolai Mickevicius, Kevin M. Koch, Andrew S Nencka) Proc. ISMRM Data Sampling and Reconstruction Workshop (2020): 53 01/26/2020    
  • Editorial for "Top 10 Reviewer Critiques of Radiology Artificial Intelligence (AI) Articles: Qualitative Thematic Analysis of Reviewer Critiques of Machine Learning / Deep Learning Manuscripts Submitted to JMRI". (Nencka AS) J Magn Reson Imaging 2020 07;52(1):255-256 PMID: 31922318 SCOPUS ID: 2-s2.0-85078051911 01/11/2020    
  • Generalized simultaneous multi-orientation 2D imaging. (Mickevicius NJ, Nencka AS, Paulson ES) Magn Reson Med 2020 08;84(2):847-856 PMID: 31872496 SCOPUS ID: 2-s2.0-85077067040 12/25/2019    
  • Multispectral diffusion-weighted MRI of the instrumented cervical spinal cord: a preliminary study of 5 cases. (Koch KM, Bhave S, Kaushik SS, Nencka AS, Budde MD) Eur Spine J 2020 May;29(5):1071-1077 PMID: 31832875 PMCID: PMC7225051 SCOPUS ID: 2-s2.0-85076835282 12/14/2019    
  • Longitudinal Reproducibility of MR Perfusion Using 3D Pseudocontinuous Arterial Spin Labeling With Hadamard-Encoded Multiple Postlabeling Delays. (Cohen AD, Agarwal M, Jagra AS, Nencka AS, Meier TB, Lebel RM, McCrea MA, Wang Y) J Magn Reson Imaging 2020 06;51(6):1846-1853 PMID: 31785062 SCOPUS ID: 2-s2.0-85075756401 12/01/2019       2 Citations
  • Image processing and analysis methods for the Adolescent Brain Cognitive Development Study. (Hagler DJ Jr, Hatton S, Cornejo MD, Makowski C, Fair DA, Dick AS, Sutherland MT, Casey BJ, Barch DM, Harms MP, Watts R, Bjork JM, Garavan HP, Hilmer L, Pung CJ, Sicat CS, Kuperman J, Bartsch H, Xue F, Heitzeg MM, Laird AR, Trinh TT, Gonzalez R, Tapert SF, Riedel MC, Squeglia LM, Hyde LW, Rosenberg MD, Earl EA, Howlett KD, Baker FC, Soules M, Diaz J, de Leon OR, Thompson WK, Neale MC, Herting M, Sowell ER, Alvarez RP, Hawes SW, Sanchez M, Bodurka J, Breslin FJ, Morris AS, Paulus MP, Simmons WK, Polimeni JR, van der Kouwe A, Nencka AS, Gray KM, Pierpaoli C, Matochik JA, Noronha A, Aklin WM, Conway K, Glantz M, Hoffman E, Little R, Lopez M, Pariyadath V, Weiss SR, Wolff-Hughes DL, DelCarmen-Wiggins R, Feldstein Ewing SW, Miranda-Dominguez O, Nagel BJ, Perrone AJ, Sturgeon DT, Goldstone A, Pfefferbaum A, Pohl KM, Prouty D, Uban K, Bookheimer SY, Dapretto M, Galvan A, Bagot K, Giedd J, Infante MA, Jacobus J, Patrick K, Shilling PD, Desikan R, Li Y, Sugrue L, Banich MT, Friedman N, Hewitt JK, Hopfer C, Sakai J, Tanabe J, Cottler LB, Nixon SJ, Chang L, Cloak C, Ernst T, Reeves G, Kennedy DN, Heeringa S, Peltier S, Schulenberg J, Sripada C, Zucker RA, Iacono WG, Luciana M, Calabro FJ, Clark DB, Lewis DA, Luna B, Schirda C, Brima T, Foxe JJ, Freedman EG, Mruzek DW, Mason MJ, Huber R, McGlade E, Prescot A, Renshaw PF, Yurgelun-Todd DA, Allgaier NA, Dumas JA, Ivanova M, Potter A, Florsheim P, Larson C, Lisdahl K, Charness ME, Fuemmeler B, Hettema JM, Maes HH, Steinberg J, Anokhin AP, Glaser P, Heath AC, Madden PA, Baskin-Sommers A, Constable RT, Grant SJ, Dowling GJ, Brown SA, Jernigan TL, Dale AM) Neuroimage 2019 11 15;202:116091 PMID: 31415884 PMCID: PMC6981278 SCOPUS ID: 2-s2.0-85072244119 08/16/2019       26 Citations
  • Resting-State fMRI Metrics in Acute Sport-Related Concussion and Their Association with Clinical Recovery: A Study from the NCAA-DOD CARE Consortium. (Meier TB, Giraldo-Chica M, España LY, Mayer AR, Harezlak J, Nencka AS, Wang Y, Koch KM, Wu YC, Saykin AJ, Giza CC, Goldman J, DiFiori JP, Guskiewicz KM, Mihalik JP, Brooks A, Broglio SP, McAllister T, McCrea MA) J Neurotrauma 2020 01 01;37(1):152-162 PMID: 31407610 PMCID: PMC6921290 SCOPUS ID: 2-s2.0-85076896953 08/14/2019       2 Citations
  • Neuroanatomical correlates of personality traits in temporal lobe epilepsy: Findings from the Epilepsy Connectome Project. (Rivera Bonet CN, Hermann B, Cook CJ, Hwang G, Dabbs K, Nair V, Forseth C, Mathis J, Allen L, Almane DN, Arkush K, Birn R, Conant LL, DeYoe EA, Felton E, Humphries CJ, Kraegel P, Maganti R, Nencka A, Nwoke O, Raghavan M, Rozman M, Shah U, Sosa VN, Struck AF, Tellapragada N, Ustine C, Ward BD, Prabhakaran V, Binder JR, Meyerand ME) Epilepsy Behav 2019 09;98(Pt A):220-227 PMID: 31387000 PMCID: PMC6732015 SCOPUS ID: 2-s2.0-85071832268 08/07/2019       1 Citation
  • Analysis of errors in diffusion kurtosis imaging caused by slice crosstalk in simultaneous multi-slice imaging. (Olson DV, Nencka AS, Arpinar VE, Muftuler LT) NMR Biomed 2019 11;32(11):e4162 PMID: 31385637 SCOPUS ID: 2-s2.0-85070715670 08/07/2019    
  • Application of a k-Space Interpolating Artificial Neural Network to In-Plane Accelerated Simultaneous Multislice Imaging for Motion Monitoring (Mickevicius, Nikolai Paulson, Eric Nencka, Andrew) Proc. ISMRM (2019): 0471 05/11/2019    
  • Build-a-FLAIR: The synthetic generation of T2-FLAIR contrast from T2-weighted and diffusion metric images through a deep neural network (Nencka, Andrew Swearingen, Brad Koch, Kevin McCrea, Michael) Proc. ISMRM (2019): 4864 05/11/2019    
  • Cascading Classifiers Improve Prostate Segmentation (Nowling, Ronald Bukowy, John McGarry, Sean Nencka, Andrew Urbain, Jay Lowman, Allison Barrington, Alexandar Hohenwalter, Mark Banerjee, Anjishnu Iczkowski, Kenneth LaViolette, Peter ) Proc. ISMRM (2019): 4035 05/11/2019    
  • Computer Aided Detection of Synovial Abnormalities Near Total Hip Replacements on 3D-MSI MRI using Deep Neural Networks (Koch, Kevin Stern, Ruben Karr, Robin Nencka, Andrew Koff, Matthew Potter, Hollis) Proc. ISMRM (2019): 1416 05/11/2019    
  • Deep Residual Neural Networks for QSM Background Removal (Liu, Juan Nencka, Andrew Koch, Kevin) Proc. ISMRM (2019): 4852 05/11/2019    
  • Effect of Coil Compression on tSNR, DVARS and Computation Time on Simultaneous Multi Slice Imaging (Arpinar, Volkan Emre Koch, Kevin Bhave, Sampada Muftuler, L Tugan Yang, Baolian Kaushik, S Sivaram Banerjee, Suchandrima Nencka, Andrew ) Proc. ISMRM (2019): 3936 05/11/2019    
  • Effects of imperfect slice separation in simultaneous multi-slice for diffusion kurtosis imaging (Muftuler, L. Tugan Olson, Daniel Arpinar, Volkan Nencka, Andrew ) Proc. ISMRM (2019): 3512 05/11/2019    
  • Effects of Tract Length in White Matter Alterations After Sports-Related Concussion: A Diffusion MRI Study from the NCAA-DoD CARE Consortium (Wu, Yu-Chien Mustafi, Sourajit Harezlak, Jaroslaw Elsaid, Nahla Riggen, Larry Koch, Kevin Nencka, Andrew Meier, Timothy Wang, Yang Giza, Christopher DiFiori, John Guskiewicz, Kevin Mihalik, Jason LaConte, Stephen Duma, Stefan Broglio, Steven McCrea, Michael Saykin, Andrew McAllister, Thomas) Proc. ISMRM (2019): 3017 05/11/2019    
  • Highly Accelerated Simultaneous Multislice Projection Imaging (Mickevicius, Nikolai Muftuler, L. Tugan Nencka, Andrew Paulson, Eric) Proc. ISMRM (2019): 4755 05/11/2019    
  • Longitudinal White-Matter Abnormalities in Sports-Related Concussion: A Study of Diffusion Magnetic Resonance Imaging from the NCAA-DoD CARE Consortium (Wu, Yu-Chien Mustafi, Sourajit Harezlak, Jaroslaw Elsaid, Nahla Lin, Zikai Riggen, Larry Koch, Kevin Nencka, Andrew Meier, Timothy Wang, Yang Giza, Christopher DiFiori, John Guskiewicz, Kevin Mihalik, Jason LaConte, Stephen Duma, Stefan Broglio, Steven McCrea, Michael Saykin, Andrew McAllister, Thomas) Proc. ISMRM (2019): 3016 05/11/2019    
  • Optimization of cardiac functional magnetic resonance imaging at 7T (Ibrahim, El-Sayed Arpinar, V Emre Muftuler, L Tugan Nencka, Andrew Koch, Kevin) Proc. ISMRM (2019): 2119 05/11/2019    
  • Optimization of Simultaneous Multi-slice Imaging with Autocalibrating Reconstruction for Cartesian Imaging Parameters for Human Connectome Type Protocol (Arpinar, Volkan Emre Koch, Kevin Bhave, Sampada Muftuler, L Tugan Kaushik, S Sivaram Yang, Baolian Banerjee, Suchandrima Nencka, Andrew ) Proc. ISMRM (2019): 3949 05/11/2019    
  • Pileup Artifact Correction Near Metal Implants Using Deep Neural Networks and Spectral K-Space Modulation (Koch, Kevin Karr, Robin Nencka, Andrew) Proc. ISMRM (2019): 4604 05/11/2019    
  • Pseudo-Cartesian k-Space Interpolation Using Artificial Neural Networks (Mickevicius, Nikolai Paulson, Eric Nencka, Andrew) Proc. ISMRM (2019): 4657 05/11/2019    
  • QSM Detects Post-Concussion Changes in Subcortical Gray Matter Susceptibility (Koch, Kevin Swearingen, Brad Karr, Robin Nencka, Andrew Muftuler, L. Tugan Meier, Timothy McCrea, Michael) Proc. ISMRM (2019): 3001 05/11/2019    
  • QSM Inversion Through Parcellated Deep Neural Networks (Liu, Juan Karr, Robin Swearingen, Brad Nencka, Andrew Koch, Kevin) Proc. ISMRM (2019): 4926 05/11/2019    
  • Rapid Abdominal Imaging Using Highly Accelerated Projection Imaging (HAPI) (Muftuler, L. Tugan Mickevicius, Nikolai Nencka, Andrew Paulson, Eric) Proc. ISMRM (2019): 2438 05/11/2019    
  • Slice Timing Effects on Spectral Dynamic Causal Modeling (Cook, Cole Hwang, Guyjoon Nair, Veena Mathis, Jedidiah Nencka, Andrew Binder, Jeffery Meyerand, Mary ) Proc. ISMRM (2019): 3873 05/11/2019    
  • Classification before segmentation: Improved u-net prostate segmentation (Nowling RJ, Bukowy J, McGarry SD, Nencka AS, Blasko O, Urbain J, Lowman A, Barrington A, Banerjee A, Iczkowski KA, Laviolette PS) 2019 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2019 - Proceedings May 2019 SCOPUS ID: 2-s2.0-85073032385 05/01/2019    
  • Cognitive slowing and its underlying neurobiology in temporal lobe epilepsy. (Hwang G, Dabbs K, Conant L, Nair VA, Mathis J, Almane DN, Nencka A, Birn R, Humphries C, Raghavan M, DeYoe EA, Struck AF, Maganti R, Binder JR, Meyerand E, Prabhakaran V, Hermann B) Cortex 2019 08;117:41-52 PMID: 30927560 PMCID: PMC6650302 SCOPUS ID: 2-s2.0-85063324806 03/31/2019       5 Citations
  • Image processing and analysis methods for the Adolescent Brain Cognitive Development Study (Donald J Hagler Jr., Sean N. Hatton, Carolina Makowski, M. Daniela Cornejo, Damien A. Fair, Anthony Steven Dick, Matthew T. Sutherland, B.J. Casey, Deanna M. Barch, Michael P. Harms, Richard Watts, James M. Bjork, Hugh P. Garavan, Laura Hilmer, Christopher J. Pung, Chelsea S. Sicat, Joshua Kuperman, Hauke Bartsch, Feng Xue, Mary M. Heitzeg, Angela R. Laird, Thanh T. Trinh, Raul Gonzalez, Susan F. Tapert, Michael C. Riedel, Lindsay M. Squeglia, Luke W. Hyde, Monica D. Rosenberg, Eric A. Earl, Katia D. Howlett, Fiona C. Baker, Mary Soules, Jazmin Diaz, Octavio Ruiz de Leon, Wesley K. Thompson, Michael C. Neale, Megan Herting, Elizabeth R. Sowell, Ruben P. Alvarez, Samuel W. Hawes, Mariana Sanchez, Jerzy Bodurka, Florence J. Breslin, Amanda Sheffield Morris, Martin P. Paulus, W. Kyle Simmons, Jonathan R. Polimeni, Andre van der Kouwe, Andrew S. Nencka, Kevin M. Gray, Carlo Pierpaoli, John A. Matochik, Antonio Noronha, Will M. Aklin, Kevin Conway, Meyer Glantz, Elizabeth Hoffman, Roger Little, Marsha Lopez, Vani Pariyadath, Susan R.B. Weiss, Dana L. Wolff-Hughes, Rebecca DelCarmen-Wiggins, Sarah W. Feldstein Ewing, Oscar Miranda-Dominguez, Bonnie J. Nagel, Anders J. Perrone, Darrick T. Sturgeon, Aimee Goldstone, Adolf Pfefferbaum, Kilian M. Pohl, Devin Prouty, Kristina Uban, Susan Y. Bookheimer, Mirella Dapretto, Adriana Galvan, Kara Bagot, Jay Giedd, M. Alejandra Infante, Joanna Jacobus, Kevin Patrick, Paul D. Shilling, Rahul Desikan, Yi Li, Leo Sugrue, Marie T. Banich, Naomi Friedman, John K. Hewitt, Christian Hopfer, Joseph Sakai, Jody Tanabe, Linda B. Cottler, Sara Jo Nixon, Linda Chang, Christine Cloak, Thomas Ernst, Gloria Reeves, David N. Kennedy, Steve Heeringa, Scott Peltier, John Schulenberg, Chandra Sripada, Robert A. Zucker, William G. Iacono, Monica Luciana, Finnegan J. Calabro, Duncan B. Clark, David A. Lewis, Beatriz Luna, Claudiu Schirda, Tufikameni Brima, John J. Foxe, Edward G. Freedman, Daniel W. Mruzek, Michael J. Mason, Rebekah Huber, Erin McGlade, Andrew Prescot, Perry F. Renshaw, Deborah A. Yurgelun-Todd, Nicholas A Allgaier, Julie A. Dumas, Masha Ivanova, Alexandra Potter, Paul Florsheim, Christine Larson, Krista Lisdahl, Michael E. Charness, Bernard Fuemmeler, John M. Hettema, Joel Steinberg, Andrey P. Anokhin, Paul Glaser, Andrew C. Heath, Pamela A. Madden, Arielle Baskin-Sommers, R. Todd Constable, Steven J. Grant, Gayathri J. Dowling, Sandra A. Brown, Terry L. Jernigan, Anders M. Dale) biorxiv (preprint) https://doi.org/10.1101/457739 03/18/2019    
  • Using Low-Frequency Oscillations to Detect Temporal Lobe Epilepsy with Machine Learning. (Hwang G, Nair VA, Mathis J, Cook CJ, Mohanty R, Zhao G, Tellapragada N, Ustine C, Nwoke OO, Rivera-Bonet C, Rozman M, Allen L, Forseth C, Almane DN, Kraegel P, Nencka A, Felton E, Struck AF, Birn R, Maganti R, Conant LL, Humphries CJ, Hermann B, Raghavan M, DeYoe EA, Binder JR, Meyerand E, Prabhakaran V) Brain Connect 2019 03;9(2):184-193 PMID: 30803273 PMCID: PMC6484357 SCOPUS ID: 2-s2.0-85063084464 02/26/2019       4 Citations
  • Build-A-FLAIR: Synthetic T2-FLAIR Contrast Generation through Physics Informed Deep Learning (Andrew S. Nencka, Andrew Klein, Kevin M. Koch, Sean D. McGarry, Peter S. LaViolette, Eric S. Paulson, Nikolai J. Mickevicius, L. Tugan Muftuler, Brad Swearingen, Michael A. McCrea) arxiv.org Nencka AS, Klein A, Koch KM, McGarry SD, LaViolette PS, Paulson ES, Mickevicius NJ, Muftuler LT, Swearingen B, McCrea MA. "Build-A-FLAIR: Synthetic T2 Contrast Generation through Physics Informed Deep Learning." arXiv.org (2019): 1901.04871. 01/15/2019    
  • Prevalence of Potentially Clinically Significant Magnetic Resonance Imaging Findings in Athletes with and without Sport-Related Concussion. (Klein AP, Tetzlaff JE, Bonis JM, Nelson LD, Mayer AR, Huber DL, Harezlak J, Mathews VP, Ulmer JL, Sinson GP, Nencka AS, Koch KM, Wu YC, Saykin AJ, DiFiori JP, Giza CC, Goldman J, Guskiewicz KM, Mihalik JP, Duma SM, Rowson S, Brooks A, Broglio SP, McAllister T, McCrea MA, Meier TB) J Neurotrauma 2019 06;36(11):1776-1785 PMID: 30618331 PMCID: PMC6551984 SCOPUS ID: 2-s2.0-85066742597 01/09/2019       8 Citations
  • Resting-state functional connectivity after concussion is associated with clinical recovery. (Kaushal M, España LY, Nencka AS, Wang Y, Nelson LD, McCrea MA, Meier TB) Hum Brain Mapp 2019 03;40(4):1211-1220 PMID: 30451340 PMCID: PMC6365215 SCOPUS ID: 2-s2.0-85056732323 11/20/2018       6 Citations
  • Effective Connectivity Within the Default Mode Network in Left Temporal Lobe Epilepsy: Findings from the Epilepsy Connectome Project. (Cook CJ, Hwang G, Mathis J, Nair VA, Conant LL, Allen L, Almane DN, Birn R, DeYoe EA, Felton E, Forseth C, Humphries CJ, Kraegel P, Nencka A, Nwoke O, Raghavan M, Rivera-Bonet C, Rozman M, Tellapragada N, Ustine C, Ward BD, Struck A, Maganti R, Hermann B, Prabhakaran V, Binder JR, Meyerand ME) Brain Connect 2019 03;9(2):174-183 PMID: 30398367 PMCID: PMC6444922 SCOPUS ID: 2-s2.0-85063100708 11/07/2018       11 Citations
  • Cerebral blood flow in acute concussion: preliminary ASL findings from the NCAA-DoD CARE consortium. (Wang Y, Nencka AS, Meier TB, Guskiewicz K, Mihalik JP, Alison Brooks M, Saykin AJ, Koch KM, Wu YC, Nelson LD, McAllister TW, Broglio SP, McCrea MA) Brain Imaging Behav 2019 Oct;13(5):1375-1385 PMID: 30159767 PMCID: PMC7232645 SCOPUS ID: 2-s2.0-85053283280 08/31/2018       7 Citations
  • Enhanced BOLD Contrast-to-Noise-Ratio and Activation Sensitivity with the Intra-shot Adapted Keyhole (ISAK) Method (Xu, Zhan Chen, Guangyu Nencka, Andrew Li, Shi-Jiang ) Proc. ISMRM (2018): 5453 06/16/2018    
  • Eye motion artifacts in T2-weighted images, identified by deep neural networks, correlate with concussion (Nencka, Andrew Bukowy, John Karr, Robin Klein, Andrew Koch, Kevin LaViolette, Peter McGarry, Sean Meier, Timothy Swearingen, Brad McCrea, Michael) Proc. ISMRM (2018): 4952 06/16/2018    
  • Gleason Probability Maps: A Radiomics Tool for Mapping Tumor Likelihood in MRI Space (McGarry, Sean Hurrell, Sarah Hohenwalter, Mark Duvnjak, Petar Griffin, Michael Iczkowski, Kenneth Jacobsohn, Kenneth Nencka, Andrew LaViolette, Peter ) Proc. ISMRM (2018): 0715 06/16/2018    
  • Machine Learning in QSM: Inversion Using Multi-Resolution Decomposition and Convolutional Neural Networks (Koch, Kevin Muftuler, Tugan Karr, Robin Nencka, Andrew ) Proc. ISMRM (2018): 2197 06/16/2018    
  • The Medical College of Wisconsin 39 (MCW39): A Magnetic Resonance Image Template of the Prostate to Facilitate Group Analysis (McGarry, Sean Budde, Matthew Hurrell, Sarah Ickzowski, Kenneth Griffin, Michael Duvnjak, Petar Jacobsohn, Kenneth Hall, William Hohenwalter, Mark Nencka, Andrew LaViolette, Peter) Proc. ISMRM (2018): 4499 06/16/2018    
  • Predictive Cytological Topography (PiCT): a Radio-Pathomics Approach to Mapping Prostate Cancer (McGarry, Sean Hurrell, Sarah Iczkowski, Kenneth Kaczmarowski, Amy Banerjee, Anjishnu Keuter, Tucker Jacobsohn, Kenneth Hall, William Nevalainen, Marja Hohenwalter, Mark See, William Nencka, Andrew LaViolette, Peter) Proc. ISMRM (2018): 0775 06/16/2018    
  • The RadPath Surfer: A Radiologic-Pathologic tool for visualizing prostate cancer histology (McGarry, Sean Hurrell, Sarah Jacobsohn, Kenneth Iczkowski, Kenneth Griffin, Michael Duvnjak, Petar Nencka, Andrew Hohenwalter, Mark LaViolette, Peter) Proc. ISMRM (2018): 4387 06/16/2018    
  • Randomized-Slice Simultaneous Multi-Slice for Diffusion Kurtosis Imaging (Olson, Daniel Arpinar, Volkan Emre Nencka, Andrew Muftuler, L. Tugan) Proc. ISMRM (2018): 5331 06/16/2018    
  • Within-Subject Characterization of Sports Concussion with Serial Diffusion MRI and Spherical Mean Technique (Budde, Matthew Muftuler, L. Tugan Nencka, Andrew Koch, Kevin Wang, Yang Meier, Timothy McCrea, Michael) Proc. ISMRM (2018): 4940 06/16/2018    
  • Quantitative Susceptibility Mapping after Sports-Related Concussion. (Koch KM, Meier TB, Karr R, Nencka AS, Muftuler LT, McCrea M) AJNR Am J Neuroradiol 2018 07;39(7):1215-1221 PMID: 29880474 PMCID: PMC6055518 SCOPUS ID: 2-s2.0-85049830789 06/09/2018       2 Citations
  • Motion Artifacts in T2-Weighted Images, Localized to Eyes Identified by Deep Neural Networks, Correlate with Concussion (Andrew S. Nencka, John D. Bukowy, Robin A. Karr, Andrew P. Klein, Kevin M. Koch, Peter LaViolette, Sean D. McGarry, Timothy B. Meier, Brad J. Swearingen, Michael McCrea) Proc. ISMRM Machine Learning Workshop (2018): 18 03/14/2018    
  • Deep Learning to Solve the Inverse Problem of Highly Accelerated Projection Imaging (Andrew S. Nencka, L. Tugan Muftuler) Proc. ISMRM Machine Learning Workshop (2018): 54 03/14/2018    
  • Multiband multi-echo simultaneous ASL/BOLD for task-induced functional MRI. (Cohen AD, Nencka AS, Wang Y) PLoS One 2018;13(2):e0190427 PMID: 29389985 PMCID: PMC5794066 SCOPUS ID: 2-s2.0-85041307092 02/02/2018       5 Citations
  • Acute White-Matter Abnormalities in Sports-Related Concussion: A Diffusion Tensor Imaging Study from the NCAA-DoD CARE Consortium. (Mustafi SM, Harezlak J, Koch KM, Nencka AS, Meier TB, West JD, Giza CC, DiFiori JP, Guskiewicz KM, Mihalik JP, LaConte SM, Duma SM, Broglio SP, Saykin AJ, McCrea M, McAllister TW, Wu YC) J Neurotrauma 2018 11 15;35(22):2653-2664 PMID: 29065805 PMCID: PMC6238613 SCOPUS ID: 2-s2.0-85053645863 10/27/2017       20 Citations
  • Stability of MRI metrics in the advanced research core of the NCAA-DoD concussion assessment, research and education (CARE) consortium. (Nencka AS, Meier TB, Wang Y, Muftuler LT, Wu YC, Saykin AJ, Harezlak J, Brooks MA, Giza CC, Difiori J, Guskiewicz KM, Mihalik JP, LaConte SM, Duma SM, Broglio S, McAllister T, McCrea MA, Koch KM) Brain Imaging Behav 2018 Aug;12(4):1121-1140 PMID: 29064019 PMCID: PMC6445663 SCOPUS ID: 2-s2.0-85032009818 10/25/2017       13 Citations
  • Functional connectivity density mapping: comparing multiband and conventional EPI protocols. (Cohen AD, Tomasi D, Shokri-Kojori E, Nencka AS, Wang Y) Brain Imaging Behav 2018 Jun;12(3):848-859 PMID: 28676985 SCOPUS ID: 2-s2.0-85021816914 07/06/2017       6 Citations
  • Off-resonance based assessment of metallic wear debris near total hip arthroplasty. (Koch KM, Koff MF, Bauer TW, Shah PH, Nencka AS, Sivaram Kaushik S, Potter HG) Magn Reson Med 2018 03;79(3):1628-1637 PMID: 28643347 PMCID: PMC5741538 SCOPUS ID: 2-s2.0-85021256752 06/24/2017       6 Citations
  • Multiband multi-echo imaging of simultaneous oxygenation and flow timeseries for resting state connectivity. (Cohen AD, Nencka AS, Lebel RM, Wang Y) PLoS One 2017;12(3):e0169253 PMID: 28253268 PMCID: PMC5333818 SCOPUS ID: 2-s2.0-85014501585 03/03/2017       9 Citations
  • Radiofrequency pulse design with numerical optimization in the Fourier domain. (Huettner AM, Nencka AS) MAGMA 2016 Jun;29(3):313-7 PMID: 26902919 SCOPUS ID: 2-s2.0-84959146076 02/24/2016       1 Citation
  • Separation of parallel encoded complex-valued slices (SPECS) from a single complex-valued aliased coil image. (Rowe DB, Bruce IP, Nencka AS, Hyde JS, Kociuba MC) Magn Reson Imaging 2016 Apr;34(3):359-69 PMID: 26612076 PMCID: PMC4761326 SCOPUS ID: 2-s2.0-84957937705 11/28/2015       2 Citations
  • Wavelet Domain Radiofrequency Pulse Design Applied to Magnetic Resonance Imaging. (Huettner AM, Mickevicius NJ, Ersoz A, Koch KM, Muftuler LT, Nencka AS) PLoS One 2015;10(10):e0141151 PMID: 26517262 PMCID: PMC4627821 SCOPUS ID: 2-s2.0-84950326643 10/31/2015       3 Citations
  • Cerebral Blood Flow Alterations in Acute Sport-Related Concussion. (Wang Y, Nelson LD, LaRoche AA, Pfaller AY, Nencka AS, Koch KM, McCrea MA) J Neurotrauma 2016 07 01;33(13):1227-36 PMID: 26414315 PMCID: PMC4931342 SCOPUS ID: 2-s2.0-84975770260 09/29/2015       70 Citations
  • Restoring susceptibility induced MRI signal loss in rat brain at 9.4 T: A step towards whole brain functional connectivity imaging. (Li R, Liu X, Sidabras JW, Paulson ES, Jesmanowicz A, Nencka AS, Hudetz AG, Hyde JS) PLoS One 2015;10(4):e0119450 PMID: 25844644 PMCID: PMC4386820 SCOPUS ID: 2-s2.0-84926645905 04/07/2015       8 Citations
  • Personal reflections on James S. Hyde. (Biswal B, Pawela C, Grist T, Meyerand ME, Nencka AS, DeYoe EA, Li SJ, Rowe DB, Kiviniemi V, Cox RW, Bodurka J, Ogawa S, Koretsky A, Hu X, Kim SG) Brain Connect 2014 Nov;4(9):631-5 PMID: 25415836 PMCID: PMC4238237 SCOPUS ID: 2-s2.0-84937197534 11/22/2014    
  • Quantification of the statistical effects of spatiotemporal processing of nontask FMRI data. (Karaman M, Nencka AS, Bruce IP, Rowe DB) Brain Connect 2014 Nov;4(9):649-61 PMID: 25132113 PMCID: PMC4238310 SCOPUS ID: 2-s2.0-84927911115 08/19/2014       5 Citations
  • Direct radiofrequency phase control in MRI by digital waveform playback at the Larmor frequency. (Jesmanowicz A, Nencka A, Hyde JS) Magn Reson Med 2014 Feb;71(2):846-52 PMID: 23468035 PMCID: PMC4002655 SCOPUS ID: 2-s2.0-84892444461 03/08/2013       3 Citations
  • Functional connectivity of the cortical swallowing network in humans. (Babaei A, Ward BD, Siwiec RM, Ahmad S, Kern M, Nencka A, Li SJ, Shaker R) Neuroimage 2013 Aug 01;76:33-44 PMID: 23416253 PMCID: PMC4130480 SCOPUS ID: 2-s2.0-84876304378 02/19/2013       23 Citations
  • Hemodynamics of the rat aortic arch (Molony DS, Nencka A, Li Z, Zhao M, Giddens DP) ASME 2012 Summer Bioengineering Conference, SBC 2012 2012:1271-1272 SCOPUS ID: 2-s2.0-84882706129 12/01/2012    
  • Reproducibility of swallow-induced cortical BOLD positive and negative fMRI activity. (Babaei A, Ward BD, Ahmad S, Patel A, Nencka A, Li SJ, Hyde J, Shaker R) Am J Physiol Gastrointest Liver Physiol 2012 Sep 01;303(5):G600-9 PMID: 22766854 PMCID: PMC3468557 SCOPUS ID: 2-s2.0-84865753007 07/07/2012       12 Citations
  • Enhancing the utility of complex-valued functional magnetic resonance imaging detection of neurobiological processes through postacquisition estimation and correction of dynamic B(0) errors and motion. (Hahn AD, Nencka AS, Rowe DB) Hum Brain Mapp 2012 Feb;33(2):288-306 PMID: 21305669 PMCID: PMC4001883 SCOPUS ID: 2-s2.0-84855939756 02/10/2011       8 Citations
  • Two-axis acceleration of functional connectivity magnetic resonance imaging by parallel excitation of phase-tagged slices and half k-space acceleration. (Jesmanowicz A, Nencka AS, Li SJ, Hyde JS) Brain Connect 2011;1(1):81-90 PMID: 22432957 PMCID: PMC3312804 01/01/2011    
  • A simple method for rectified noise floor suppression: Phase-corrected real data reconstruction with application to diffusion-weighted imaging. (Prah DE, Paulson ES, Nencka AS, Schmainda KM) Magn Reson Med 2010 Aug;64(2):418-29 PMID: 20665786 PMCID: PMC4321728 SCOPUS ID: 2-s2.0-77955111675 07/29/2010       20 Citations
  • Functional magnetic resonance imaging brain activation directly from k-space. (Rowe DB, Hahn AD, Nencka AS) Magn Reson Imaging 2009 Dec;27(10):1370-81 PMID: 19608365 PMCID: PMC2783194 SCOPUS ID: 2-s2.0-70449530580 07/18/2009       1 Citation
  • A Mathematical Model for Understanding the STatistical effects of k-space (AMMUST-k) preprocessing on observed voxel measurements in fcMRI and fMRI. (Nencka AS, Hahn AD, Rowe DB) J Neurosci Methods 2009 Jul 30;181(2):268-82 PMID: 19463854 PMCID: PMC2990679 SCOPUS ID: 2-s2.0-67649086216 05/26/2009       7 Citations
  • Improving robustness and reliability of phase-sensitive fMRI analysis using temporal off-resonance alignment of single-echo timeseries (TOAST). (Hahn AD, Nencka AS, Rowe DB) Neuroimage 2009 Feb 01;44(3):742-52 PMID: 18992826 PMCID: PMC2884970 SCOPUS ID: 2-s2.0-57649213868 11/11/2008       25 Citations
  • Reducing the unwanted draining vein BOLD contribution in fMRI with statistical post-processing methods. (Nencka AS, Rowe DB) Neuroimage 2007 Aug 01;37(1):177-88 PMID: 17560130 SCOPUS ID: 2-s2.0-34447562908 06/15/2007       34 Citations
  • Signal and noise of Fourier reconstructed fMRI data. (Rowe DB, Nencka AS, Hoffmann RG) J Neurosci Methods 2007 Jan 30;159(2):361-9 PMID: 16945421 PMCID: PMC4089039 SCOPUS ID: 2-s2.0-33845400355 09/02/2006       17 Citations
  • Last update: 07/14/2020
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