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Andrew S. Nencka PhD

Andrew S. Nencka PhD profile photo picture

Director, Associate Professor

Institution: Medical College of Wisconsin
Department: Radiology
Division: Research

Member of the Cancer Center

View Curriculum Vitae

Research Experience

  • Data Interpretation, Statistical
  • Diffusion Tensor Imaging
  • Echo-Planar Imaging
  • Image Enhancement
  • Image Processing, Computer-Assisted
  • Machine Learning
  • Magnetic Resonance Imaging
  • Models, Statistical
  • Monte Carlo Method
  • Regression Analysis

    • Leadership Positions

  • Chair, Faculty IT Committee, 2014-2016
  • Chair, Research MRI Safety Committee, 2012-Present
  • Secretary, Faculty IT Committee, 2016-2017
  • Associate Director, Center for Imaging Research, 2016-Present

    • Publications (109)

  • Distinct Functional Connectivity Patterns for Intermittent Vs Constant Neuropathic Pain Phenotypes in Persistent Spinal Pain Syndrome Type 2 Patients. (Pahapill PA, Arocho-Quinones EV, Chen G, Swearingen B, Tomas CW, Koch KM, Nencka AS) J Pain Res 2024;17:1453-1460 PMID: 38628431 PMCID: PMC11020324 SCOPUS ID: 2-s2.0-85192076655 04/17/2024    
  • Diffusion Weighted Magnetic Resonance Imaging of Spinal Cord Injuries After Instrumented Fusion Stabilization. (Koch KM, Nencka AS, Kurpad S, Budde MD) J Neurotrauma 2024 Apr 10 PMID: 38251658 SCOPUS ID: 2-s2.0-85190264996 01/22/2024    
  • T1-/T2-weighted ratio reveals no alterations to gray matter myelination in temporal lobe epilepsy. (Denis C, Dabbs K, Nair VA, Mathis J, Almane DN, Lakshmanan A, Nencka A, Birn RM, Conant L, Humphries C, Felton E, Raghavan M, DeYoe EA, Binder JR, Hermann B, Prabhakaran V, Bendlin BB, Meyerand ME, Boly M, Struck AF) Ann Clin Transl Neurol 2023 Nov;10(11):2149-2154 PMID: 37872734 PMCID: PMC10647008 SCOPUS ID: 2-s2.0-85174616650 10/24/2023    
  • Design and Harmonization Approach for the Multi-Institutional Neurocognitive Discovery Study (MINDS) of Adult Congenital Heart Disease (ACHD) Neuroimaging Ancillary Study: A Technical Note (Panigrahy A, Schmithorst V, Ceschin R, Lee V, Beluk N, Wallace J, Wheaton O, Chenevert T, Qiu D, Lee JN, Nencka A, Gagoski B, Berman JI, Yuan W, Macgowan C, Coatsworth J, Fleysher L, Cannistraci C, Sleeper LA, Hoskoppal A, Silversides C, Radhakrishnan R, Markham L, Rhodes JF, Dugan LM, Brown N, Ermis P, Fuller S, Cotts TB, Rodriguez FH, Lindsay I, Beers S, Aizenstein H, Bellinger DC, Newburger JW, Umfleet LG, Cohen S, Zaidi A, Gurvitz M) Journal of Cardiovascular Development and Disease September 2023;10(9) SCOPUS ID: 2-s2.0-85172930672 09/01/2023    
  • Association of neighborhood deprivation with white matter connectome abnormalities in temporal lobe epilepsy. (Chu DY, Adluru N, Nair VA, Choi T, Adluru A, Garcia-Ramos C, Dabbs K, Mathis J, Nencka AS, Gundlach C, Conant L, Binder JR, Meyerand ME, Alexander AL, Struck AF, Hermann B, Prabhakaran V) Epilepsia 2023 Sep;64(9):2484-2498 PMID: 37376741 PMCID: PMC10530287 SCOPUS ID: 2-s2.0-85164792241 06/28/2023    
  • Development and Stability Analysis of Carpal Kinematic Metrics from 4D Magnetic Resonance Imaging. (Sharafi A, Nencka AS, Koch KM) ArXiv 2023 May 25 PMID: 37292477 PMCID: PMC10246087 06/09/2023    
  • Diffusion-weighted MRI of the spinal cord in cervical spondylotic myelopathy after instrumented fusion. (Koch KM, Nencka AS, Klein A, Wang M, Kurpad S, Vedantam A, Budde M) Front Neurol 2023;14:1172833 PMID: 37273696 PMCID: PMC10236479 SCOPUS ID: 2-s2.0-85161052826 06/05/2023       1 Citation
  • Functional Connectivity Magnetic Resonance Imaging Sequences in Patients With Postsurgical Persistent Spinal Pain Syndrome Type 2 With Implanted Spinal Cord Stimulation Systems: A Safety, Feasibility, and Validity Study. (Pahapill PA, Chen G, Arocho-Quinones EV, Nencka AS) Neuromodulation 2023 Jul;26(5):1009-1014 PMID: 37204362 SCOPUS ID: 2-s2.0-85159401230 05/19/2023       1 Citation
  • Multi-shell connectome DWI-based graph theory measures for the prediction of temporal lobe epilepsy and cognition. (Garcia-Ramos C, Adluru N, Chu DY, Nair V, Adluru A, Nencka A, Maganti R, Mathis J, Conant LL, Alexander AL, Prabhakaran V, Binder JR, Meyerand ME, Hermann B, Struck AF) Cereb Cortex 2023 Jun 08;33(12):8056-8065 PMID: 37067514 PMCID: PMC10267614 SCOPUS ID: 2-s2.0-85163480791 04/18/2023    
  • Comparison of a machine and deep learning model for automated tumor annotation on digitized whole slide prostate cancer histology. (Duenweg SR, Brehler M, Bobholz SA, Lowman AK, Winiarz A, Kyereme F, Nencka A, Iczkowski KA, LaViolette PS) PLoS One 2023;18(3):e0278084 PMID: 36928230 PMCID: PMC10019669 SCOPUS ID: 2-s2.0-85150250210 03/18/2023       2 Citations
  • A graph theoretic approach to neurodegeneration: five data-driven neuropsychological subtypes in mild cognitive impairment. (Pommy J, Conant L, Butts AM, Nencka A, Wang Y, Franczak M, Glass-Umfleet L) Neuropsychol Dev Cogn B Aging Neuropsychol Cogn 2023;30(6):903-922 PMID: 36648118 SCOPUS ID: 2-s2.0-85146479741 01/18/2023       2 Citations
  • Relationship between cognitive reserve, brain volume, and neuropsychological performance in amnestic and nonamnestic MCI. (Reiter K, Butts AM, Janecek JK, Correro AN, Nencka A, Agarwal M, Franczak M, Glass Umfleet L) Neuropsychol Dev Cogn B Aging Neuropsychol Cogn 2023;30(6):940-956 PMID: 36573001 SCOPUS ID: 2-s2.0-85145338983 12/28/2022       1 Citation
  • Predicting Neoadjuvant Treatment Response in Rectal Cancer Using Machine Learning: Evaluation of MRI-Based Radiomic and Clinical Models. (Peterson KJ, Simpson MT, Drezdzon MK, Szabo A, Ausman RA, Nencka AS, Knechtges PM, Peterson CY, Ludwig KA, Ridolfi TJ) J Gastrointest Surg 2023 Jan;27(1):122-130 PMID: 36271199 SCOPUS ID: 2-s2.0-85140356180 10/23/2022       1 Citation
  • Dynamic tracking of scaphoid, lunate, and capitate carpal bones using four-dimensional MRI. (Zarenia M, Arpinar VE, Nencka AS, Muftuler LT, Koch KM) PLoS One 2022;17(6):e0269336 PMID: 35653348 PMCID: PMC9162359 SCOPUS ID: 2-s2.0-85131243073 06/03/2022       2 Citations
  • Head Impact Exposure, Gray Matter Volume, and Moderating Effects of Estimated Intelligence Quotient and Educational Attainment in Former Athletes at Midlife. (Brett BL, Walton SR, Meier TB, Nencka AS, Powell JR, Giovanello KS, Guskiewicz KM, McCrea MA) J Neurotrauma 2022 Apr;39(7-8):497-507 PMID: 35044240 PMCID: PMC8978573 SCOPUS ID: 2-s2.0-85128039718 01/20/2022       5 Citations
  • Detecting Primary Progressive Aphasia Atrophy Patterns: A Comparison of Visual Assessment and Quantitative Neuroimaging Techniques (Franczak S, Pommy J, Minor G, Zolliecoffer C, Bhalla M, Agarwal M, Nencka A, Wang Y, Klein A, O'Neill D, Henry J, Umfleet G) Journal of Alzheimer's Disease Reports 2022;6(1):493-501 SCOPUS ID: 2-s2.0-85136808060 01/01/2022    
  • Analysis and Evaluation of a Deep Learning Reconstruction Approach with Denoising for Orthopedic MRI. (Koch KM, Sherafati M, Arpinar VE, Bhave S, Ausman R, Nencka AS, Lebel RM, McKinnon G, Kaushik SS, Vierck D, Stetz MR, Fernando S, Mannem R) Radiol Artif Intell 2021 Nov;3(6):e200278 PMID: 34870214 PMCID: PMC8637471 SCOPUS ID: 2-s2.0-85120520485 12/07/2021       24 Citations
  • Diffusion propagator metrics are biased when simultaneous multi-slice acceleration is used. (Muftuler LT, Nencka AS, Koch KM) Magn Reson Imaging 2022 Feb;86:46-54 PMID: 34801673 SCOPUS ID: 2-s2.0-85119508656 11/22/2021       3 Citations
  • Filtered Diffusion-Weighted MRI of the Human Cervical Spinal Cord: Feasibility and Application to Traumatic Spinal Cord Injury. (Murphy SA, Furger R, Kurpad SN, Arpinar VE, Nencka A, Koch K, Budde MD) AJNR Am J Neuroradiol 2021 Nov;42(11):2101-2106 PMID: 34620590 PMCID: PMC8583257 SCOPUS ID: 2-s2.0-85119420507 10/09/2021       5 Citations
  • Baseline brain function in the preadolescents of the ABCD Study. (Chaarani B, Hahn S, Allgaier N, Adise S, Owens MM, Juliano AC, Yuan DK, Loso H, Ivanciu A, Albaugh MD, Dumas J, Mackey S, Laurent J, Ivanova M, Hagler DJ, Cornejo MD, Hatton S, Agrawal A, Aguinaldo L, Ahonen L, Aklin W, Anokhin AP, Arroyo J, Avenevoli S, Babcock D, Bagot K, Baker FC, Banich MT, Barch DM, Bartsch H, Baskin-Sommers A, Bjork JM, Blachman-Demner D, Bloch M, Bogdan R, Bookheimer SY, Breslin F, Brown S, Calabro FJ, Calhoun V, Casey BJ, Chang L, Clark DB, Cloak C, Constable RT, Constable K, Corley R, Cottler LB, Coxe S, Dagher RK, Dale AM, Dapretto M, Delcarmen-Wiggins R, Dick AS, Do EK, Dosenbach NUF, Dowling GJ, Edwards S, Ernst TM, Fair DA, Fan CC, Feczko E, Feldstein-Ewing SW, Florsheim P, Foxe JJ, Freedman EG, Friedman NP, Friedman-Hill S, Fuemmeler BF, Galvan A, Gee DG, Giedd J, Glantz M, Glaser P, Godino J, Gonzalez M, Gonzalez R, Grant S, Gray KM, Haist F, Harms MP, Hawes S, Heath AC, Heeringa S, Heitzeg MM, Hermosillo R, Herting MM, Hettema JM, Hewitt JK, Heyser C, Hoffman E, Howlett K, Huber RS, Huestis MA, Hyde LW, Iacono WG, Infante MA, Irfanoglu O, Isaiah A, Iyengar S, Jacobus J, James R, Jean-Francois B, Jernigan T, Karcher NR, Kaufman A, Kelley B, Kit B, Ksinan A, Kuperman J, Laird AR, Larson C, LeBlanc K, Lessov-Schlagger C, Lever N, Lewis DA, Lisdahl K, Little AR, Lopez M, Luciana M, Luna B, Madden PA, Maes HH, Makowski C, Marshall AT, Mason MJ, Matochik J, McCandliss BD, McGlade E, Montoya I, Morgan G, Morris A, Mulford C, Murray P, Nagel BJ, Neale MC, Neigh G, Nencka A, Noronha A, Nixon SJ, Palmer CE, Pariyadath V, Paulus MP, Pelham WE, Pfefferbaum D, Pierpaoli C, Prescot A, Prouty D, Puttler LI, Rajapaske N, Rapuano KM, Reeves G, Renshaw PF, Riedel MC, Rojas P, de la Rosa M, Rosenberg MD, Ross MJ, Sanchez M, Schirda C, Schloesser D, Schulenberg J, Sher KJ, Sheth C, Shilling PD, Simmons WK, Sowell ER, Speer N, Spittel M, Squeglia LM, Sripada C, Steinberg J, Striley C, Sutherland MT, Tanabe J, Tapert SF, Thompson W, Tomko RL, Uban KA, Vrieze S, Wade NE, Watts R, Weiss S, Wiens BA, Williams OD, Wilbur A, Wing D, Wolff-Hughes D, Yang R, Yurgelun-Todd DA, Zucker RA, Potter A, Garavan HP, ABCD Consortium) Nat Neurosci 2021 Aug;24(8):1176-1186 PMID: 34099922 PMCID: PMC8947197 SCOPUS ID: 2-s2.0-85107821826 06/09/2021       42 Citations
  • Value CMR: Towards a Comprehensive, Rapid, Cost-Effective Cardiovascular Magnetic Resonance Imaging. (Ibrahim EH, Frank L, Baruah D, Arpinar VE, Nencka AS, Koch KM, Muftuler LT, Unal O, Stojanovska J, Rubenstein JC, Brown SA, Charlson J, Gore EM, Bergom C) Int J Biomed Imaging 2021;2021:8851958 PMID: 34054936 PMCID: PMC8147553 SCOPUS ID: 2-s2.0-85107219799 06/01/2021       4 Citations
  • Regional and global resting-state functional MR connectivity in temporal lobe epilepsy: Results from the Epilepsy Connectome Project. (Struck AF, Boly M, Hwang G, Nair V, Mathis J, Nencka A, Conant LL, DeYoe EA, Raghavan M, Prabhakaran V, Binder JR, Meyerand ME, Hermann BP) Epilepsy Behav 2021 Apr;117:107841 PMID: 33611101 PMCID: PMC8035304 SCOPUS ID: 2-s2.0-85100881402 02/22/2021       19 Citations
  • Split-slice training and hyperparameter tuning of RAKI networks for simultaneous multi-slice reconstruction. (Nencka AS, Arpinar VE, Bhave S, Yang B, Banerjee S, McCrea M, Mickevicius NJ, Muftuler LT, Koch KM) Magn Reson Med 2021 Jun;85(6):3272-3280 PMID: 33331002 SCOPUS ID: 2-s2.0-85097598109 12/18/2020       6 Citations
  • Cardiac functional magnetic resonance imaging at 7T: Image quality optimization and ultra-high field capabilities. (Ibrahim EH, Arpinar VE, Muftuler LT, Stojanovska J, Nencka AS, Koch KM) World J Radiol 2020 Oct 28;12(10):231-246 PMID: 33240463 PMCID: PMC7653183 11/27/2020    
  • Acute Post-Concussive Assessments of Brain Tissue Magnetism Using Magnetic Resonance Imaging. (Koch KM, Nencka AS, Swearingen B, Bauer A, Meier TB, McCrea M) J Neurotrauma 2021 Apr 01;38(7):848-857 PMID: 33066712 PMCID: PMC8432603 SCOPUS ID: 2-s2.0-85103782270 10/18/2020       10 Citations
  • Accurate segmentation of prostate cancer histomorphometric features using a weakly supervised convolutional neural network. (Bukowy JD, Foss H, McGarry SD, Lowman AK, Hurrell SL, Iczkowski KA, Banerjee A, Bobholz SA, Barrington A, Dayton A, Unteriner J, Jacobsohn K, See WA, Nevalainen MT, Nencka AS, Ethridge T, Jarrard DF, LaViolette PS) J Med Imaging (Bellingham) 2020 Sep;7(5):057501 PMID: 33062803 PMCID: PMC7550797 SCOPUS ID: 2-s2.0-85096654686 10/17/2020       5 Citations
  • Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer. (McGarry SD, Bukowy JD, Iczkowski KA, Lowman AK, Brehler M, Bobholz S, Nencka A, Barrington A, Jacobsohn K, Unteriner J, Duvnjak P, Griffin M, Hohenwalter M, Keuter T, Huang W, Antic T, Paner G, Palangmonthip W, Banerjee A, LaViolette PS) J Med Imaging (Bellingham) 2020 Sep;7(5):054501 PMID: 32923510 PMCID: PMC7479263 SCOPUS ID: 2-s2.0-85096616055 09/15/2020       12 Citations
  • Optimization of hyperparameters for SMS reconstruction. (Muftuler LT, Arpinar VE, Koch K, Bhave S, Yang B, Kaushik S, Banerjee S, Nencka A) Magn Reson Imaging 2020 Nov;73:91-103 PMID: 32835848 SCOPUS ID: 2-s2.0-85089907300 08/25/2020       2 Citations
  • Network, clinical and sociodemographic features of cognitive phenotypes in temporal lobe epilepsy. (Hermann B, Conant LL, Cook CJ, Hwang G, Garcia-Ramos C, Dabbs K, Nair VA, Mathis J, Bonet CNR, Allen L, Almane DN, Arkush K, Birn R, DeYoe EA, Felton E, Maganti R, Nencka A, Raghavan M, Shah U, Sosa VN, Struck AF, Ustine C, Reyes A, Kaestner E, McDonald C, Prabhakaran V, Binder JR, Meyerand ME) Neuroimage Clin 2020;27:102341 PMID: 32707534 PMCID: PMC7381697 SCOPUS ID: 2-s2.0-85088252788 07/25/2020       44 Citations
  • Longitudinal white-matter abnormalities in sports-related concussion: A diffusion MRI study. (Wu YC, Harezlak J, Elsaid NMH, Lin Z, Wen Q, Mustafi SM, Riggen LD, Koch KM, Nencka AS, Meier TB, Mayer AR, Wang Y, Giza CC, DiFiori JP, Guskiewicz KM, Mihalik JP, LaConte SM, Duma SM, Broglio SP, Saykin AJ, McCrea MA, McAllister TW) Neurology 2020 Aug 18;95(7):e781-e792 PMID: 32641518 PMCID: PMC7605507 SCOPUS ID: 2-s2.0-85089787382 07/10/2020       41 Citations
  • Neuroticism in temporal lobe epilepsy is associated with altered limbic-frontal lobe resting-state functional connectivity. (Rivera Bonet CN, Hwang G, Hermann B, Struck AF, J Cook C, A Nair V, Mathis J, Allen L, Almane DN, Arkush K, Birn R, Conant LL, DeYoe EA, Felton E, Maganti R, Nencka A, Raghavan M, Shah U, Sosa VN, Ustine C, Prabhakaran V, Binder JR, Meyerand ME) Epilepsy Behav 2020 Sep;110:107172 PMID: 32554180 PMCID: PMC7483612 SCOPUS ID: 2-s2.0-85086476142 06/20/2020       8 Citations
  • Radiomic Features of Multiparametric MRI Present Stable Associations With Analogous Histological Features in Patients With Brain Cancer. (Bobholz SA, Lowman AK, Barrington A, Brehler M, McGarry S, Cochran EJ, Connelly J, Mueller WM, Agarwal M, O'Neill D, Nencka AS, Banerjee A, LaViolette PS) Tomography 2020 Jun;6(2):160-169 PMID: 32548292 PMCID: PMC7289245 SCOPUS ID: 2-s2.0-85086686895 06/18/2020       22 Citations
  • Functional connectivity and structural analysis of trial spinal cord stimulation responders in failed back surgery syndrome. (Pahapill PA, Chen G, Arocho-Quinones EV, Nencka AS, Li SJ) PLoS One 2020;15(2):e0228306 PMID: 32074111 PMCID: PMC7029839 SCOPUS ID: 2-s2.0-85079521450 02/20/2020       10 Citations
  • Brain aging in temporal lobe epilepsy: Chronological, structural, and functional. (Hwang G, Hermann B, Nair VA, Conant LL, Dabbs K, Mathis J, Cook CJ, Rivera-Bonet CN, Mohanty R, Zhao G, Almane DN, Nencka A, Felton E, Struck AF, Birn R, Maganti R, Humphries CJ, Raghavan M, DeYoe EA, Bendlin BB, Prabhakaran V, Binder JR, Meyerand ME) Neuroimage Clin 2020;25:102183 PMID: 32058319 PMCID: PMC7016276 SCOPUS ID: 2-s2.0-85079141146 02/15/2020       25 Citations
  • The Association Between Persistent White-Matter Abnormalities and Repeat Injury After Sport-Related Concussion. (Brett BL, Wu YC, Mustafi SM, Saykin AJ, Koch KM, Nencka AS, Giza CC, Goldman J, Guskiewicz KM, Mihalik JP, Duma SM, Broglio SP, McAllister TW, McCrea MA, Meier TB) Front Neurol 2019;10:1345 PMID: 32038451 PMCID: PMC6990104 SCOPUS ID: 2-s2.0-85079132454 02/11/2020       16 Citations
  • Just Another CNN in K-space to De-Alias N Individual Excited Locations Simultaneously (JACKDANIELS) (Sampada Bhave, Volkan E Arpinar, Nikolai Mickevicius, Kevin M. Koch, Andrew S Nencka) Proc. ISMRM Data Sampling and Reconstruction Workshop (2020): 53 01/26/2020    
  • Editorial for "Top 10 Reviewer Critiques of Radiology Artificial Intelligence (AI) Articles: Qualitative Thematic Analysis of Reviewer Critiques of Machine Learning / Deep Learning Manuscripts Submitted to JMRI". (Nencka AS) J Magn Reson Imaging 2020 Jul;52(1):255-256 PMID: 31922318 SCOPUS ID: 2-s2.0-85078051911 01/11/2020       1 Citation
  • Generalized simultaneous multi-orientation 2D imaging. (Mickevicius NJ, Nencka AS, Paulson ES) Magn Reson Med 2020 Aug;84(2):847-856 PMID: 31872496 SCOPUS ID: 2-s2.0-85077067040 12/25/2019       1 Citation
  • Multispectral diffusion-weighted MRI of the instrumented cervical spinal cord: a preliminary study of 5 cases. (Koch KM, Bhave S, Kaushik SS, Nencka AS, Budde MD) Eur Spine J 2020 May;29(5):1071-1077 PMID: 31832875 PMCID: PMC7225051 SCOPUS ID: 2-s2.0-85076835282 12/14/2019       3 Citations
  • Longitudinal Reproducibility of MR Perfusion Using 3D Pseudocontinuous Arterial Spin Labeling With Hadamard-Encoded Multiple Postlabeling Delays. (Cohen AD, Agarwal M, Jagra AS, Nencka AS, Meier TB, Lebel RM, McCrea MA, Wang Y) J Magn Reson Imaging 2020 Jun;51(6):1846-1853 PMID: 31785062 PMCID: PMC10063372 SCOPUS ID: 2-s2.0-85075756401 12/01/2019       27 Citations
  • Image processing and analysis methods for the Adolescent Brain Cognitive Development Study. (Hagler DJ Jr, Hatton S, Cornejo MD, Makowski C, Fair DA, Dick AS, Sutherland MT, Casey BJ, Barch DM, Harms MP, Watts R, Bjork JM, Garavan HP, Hilmer L, Pung CJ, Sicat CS, Kuperman J, Bartsch H, Xue F, Heitzeg MM, Laird AR, Trinh TT, Gonzalez R, Tapert SF, Riedel MC, Squeglia LM, Hyde LW, Rosenberg MD, Earl EA, Howlett KD, Baker FC, Soules M, Diaz J, de Leon OR, Thompson WK, Neale MC, Herting M, Sowell ER, Alvarez RP, Hawes SW, Sanchez M, Bodurka J, Breslin FJ, Morris AS, Paulus MP, Simmons WK, Polimeni JR, van der Kouwe A, Nencka AS, Gray KM, Pierpaoli C, Matochik JA, Noronha A, Aklin WM, Conway K, Glantz M, Hoffman E, Little R, Lopez M, Pariyadath V, Weiss SR, Wolff-Hughes DL, DelCarmen-Wiggins R, Feldstein Ewing SW, Miranda-Dominguez O, Nagel BJ, Perrone AJ, Sturgeon DT, Goldstone A, Pfefferbaum A, Pohl KM, Prouty D, Uban K, Bookheimer SY, Dapretto M, Galvan A, Bagot K, Giedd J, Infante MA, Jacobus J, Patrick K, Shilling PD, Desikan R, Li Y, Sugrue L, Banich MT, Friedman N, Hewitt JK, Hopfer C, Sakai J, Tanabe J, Cottler LB, Nixon SJ, Chang L, Cloak C, Ernst T, Reeves G, Kennedy DN, Heeringa S, Peltier S, Schulenberg J, Sripada C, Zucker RA, Iacono WG, Luciana M, Calabro FJ, Clark DB, Lewis DA, Luna B, Schirda C, Brima T, Foxe JJ, Freedman EG, Mruzek DW, Mason MJ, Huber R, McGlade E, Prescot A, Renshaw PF, Yurgelun-Todd DA, Allgaier NA, Dumas JA, Ivanova M, Potter A, Florsheim P, Larson C, Lisdahl K, Charness ME, Fuemmeler B, Hettema JM, Maes HH, Steinberg J, Anokhin AP, Glaser P, Heath AC, Madden PA, Baskin-Sommers A, Constable RT, Grant SJ, Dowling GJ, Brown SA, Jernigan TL, Dale AM) Neuroimage 2019 Nov 15;202:116091 PMID: 31415884 PMCID: PMC6981278 SCOPUS ID: 2-s2.0-85072244119 08/16/2019       407 Citations
  • Resting-State fMRI Metrics in Acute Sport-Related Concussion and Their Association with Clinical Recovery: A Study from the NCAA-DOD CARE Consortium. (Meier TB, Giraldo-Chica M, España LY, Mayer AR, Harezlak J, Nencka AS, Wang Y, Koch KM, Wu YC, Saykin AJ, Giza CC, Goldman J, DiFiori JP, Guskiewicz KM, Mihalik JP, Brooks A, Broglio SP, McAllister T, McCrea MA) J Neurotrauma 2020 Jan 01;37(1):152-162 PMID: 31407610 PMCID: PMC6921290 SCOPUS ID: 2-s2.0-85076896953 08/14/2019       36 Citations
  • Neuroanatomical correlates of personality traits in temporal lobe epilepsy: Findings from the Epilepsy Connectome Project. (Rivera Bonet CN, Hermann B, Cook CJ, Hwang G, Dabbs K, Nair V, Forseth C, Mathis J, Allen L, Almane DN, Arkush K, Birn R, Conant LL, DeYoe EA, Felton E, Humphries CJ, Kraegel P, Maganti R, Nencka A, Nwoke O, Raghavan M, Rozman M, Shah U, Sosa VN, Struck AF, Tellapragada N, Ustine C, Ward BD, Prabhakaran V, Binder JR, Meyerand ME) Epilepsy Behav 2019 Sep;98(Pt A):220-227 PMID: 31387000 PMCID: PMC6732015 SCOPUS ID: 2-s2.0-85071832268 08/07/2019       13 Citations
  • Analysis of errors in diffusion kurtosis imaging caused by slice crosstalk in simultaneous multi-slice imaging. (Olson DV, Nencka AS, Arpinar VE, Muftuler LT) NMR Biomed 2019 Nov;32(11):e4162 PMID: 31385637 SCOPUS ID: 2-s2.0-85070715670 08/07/2019       3 Citations
  • Application of a k-Space Interpolating Artificial Neural Network to In-Plane Accelerated Simultaneous Multislice Imaging for Motion Monitoring (Mickevicius, Nikolai Paulson, Eric Nencka, Andrew) Proc. ISMRM (2019): 0471 05/11/2019    
  • Build-a-FLAIR: The synthetic generation of T2-FLAIR contrast from T2-weighted and diffusion metric images through a deep neural network (Nencka, Andrew Swearingen, Brad Koch, Kevin McCrea, Michael) Proc. ISMRM (2019): 4864 05/11/2019    
  • Cascading Classifiers Improve Prostate Segmentation (Nowling, Ronald Bukowy, John McGarry, Sean Nencka, Andrew Urbain, Jay Lowman, Allison Barrington, Alexandar Hohenwalter, Mark Banerjee, Anjishnu Iczkowski, Kenneth LaViolette, Peter ) Proc. ISMRM (2019): 4035 05/11/2019    
  • Computer Aided Detection of Synovial Abnormalities Near Total Hip Replacements on 3D-MSI MRI using Deep Neural Networks (Koch, Kevin Stern, Ruben Karr, Robin Nencka, Andrew Koff, Matthew Potter, Hollis) Proc. ISMRM (2019): 1416 05/11/2019    
  • Deep Residual Neural Networks for QSM Background Removal (Liu, Juan Nencka, Andrew Koch, Kevin) Proc. ISMRM (2019): 4852 05/11/2019    
  • Effect of Coil Compression on tSNR, DVARS and Computation Time on Simultaneous Multi Slice Imaging (Arpinar, Volkan Emre Koch, Kevin Bhave, Sampada Muftuler, L Tugan Yang, Baolian Kaushik, S Sivaram Banerjee, Suchandrima Nencka, Andrew ) Proc. ISMRM (2019): 3936 05/11/2019    
  • Effects of imperfect slice separation in simultaneous multi-slice for diffusion kurtosis imaging (Muftuler, L. Tugan Olson, Daniel Arpinar, Volkan Nencka, Andrew ) Proc. ISMRM (2019): 3512 05/11/2019    
  • Effects of Tract Length in White Matter Alterations After Sports-Related Concussion: A Diffusion MRI Study from the NCAA-DoD CARE Consortium (Wu, Yu-Chien Mustafi, Sourajit Harezlak, Jaroslaw Elsaid, Nahla Riggen, Larry Koch, Kevin Nencka, Andrew Meier, Timothy Wang, Yang Giza, Christopher DiFiori, John Guskiewicz, Kevin Mihalik, Jason LaConte, Stephen Duma, Stefan Broglio, Steven McCrea, Michael Saykin, Andrew McAllister, Thomas) Proc. ISMRM (2019): 3017 05/11/2019    
  • Highly Accelerated Simultaneous Multislice Projection Imaging (Mickevicius, Nikolai Muftuler, L. Tugan Nencka, Andrew Paulson, Eric) Proc. ISMRM (2019): 4755 05/11/2019    
  • Longitudinal White-Matter Abnormalities in Sports-Related Concussion: A Study of Diffusion Magnetic Resonance Imaging from the NCAA-DoD CARE Consortium (Wu, Yu-Chien Mustafi, Sourajit Harezlak, Jaroslaw Elsaid, Nahla Lin, Zikai Riggen, Larry Koch, Kevin Nencka, Andrew Meier, Timothy Wang, Yang Giza, Christopher DiFiori, John Guskiewicz, Kevin Mihalik, Jason LaConte, Stephen Duma, Stefan Broglio, Steven McCrea, Michael Saykin, Andrew McAllister, Thomas) Proc. ISMRM (2019): 3016 05/11/2019    
  • Optimization of cardiac functional magnetic resonance imaging at 7T (Ibrahim, El-Sayed Arpinar, V Emre Muftuler, L Tugan Nencka, Andrew Koch, Kevin) Proc. ISMRM (2019): 2119 05/11/2019    
  • Optimization of Simultaneous Multi-slice Imaging with Autocalibrating Reconstruction for Cartesian Imaging Parameters for Human Connectome Type Protocol (Arpinar, Volkan Emre Koch, Kevin Bhave, Sampada Muftuler, L Tugan Kaushik, S Sivaram Yang, Baolian Banerjee, Suchandrima Nencka, Andrew ) Proc. ISMRM (2019): 3949 05/11/2019    
  • Pileup Artifact Correction Near Metal Implants Using Deep Neural Networks and Spectral K-Space Modulation (Koch, Kevin Karr, Robin Nencka, Andrew) Proc. ISMRM (2019): 4604 05/11/2019    
  • Pseudo-Cartesian k-Space Interpolation Using Artificial Neural Networks (Mickevicius, Nikolai Paulson, Eric Nencka, Andrew) Proc. ISMRM (2019): 4657 05/11/2019    
  • QSM Detects Post-Concussion Changes in Subcortical Gray Matter Susceptibility (Koch, Kevin Swearingen, Brad Karr, Robin Nencka, Andrew Muftuler, L. Tugan Meier, Timothy McCrea, Michael) Proc. ISMRM (2019): 3001 05/11/2019    
  • QSM Inversion Through Parcellated Deep Neural Networks (Liu, Juan Karr, Robin Swearingen, Brad Nencka, Andrew Koch, Kevin) Proc. ISMRM (2019): 4926 05/11/2019    
  • Rapid Abdominal Imaging Using Highly Accelerated Projection Imaging (HAPI) (Muftuler, L. Tugan Mickevicius, Nikolai Nencka, Andrew Paulson, Eric) Proc. ISMRM (2019): 2438 05/11/2019    
  • Slice Timing Effects on Spectral Dynamic Causal Modeling (Cook, Cole Hwang, Guyjoon Nair, Veena Mathis, Jedidiah Nencka, Andrew Binder, Jeffery Meyerand, Mary ) Proc. ISMRM (2019): 3873 05/11/2019    
  • Classification before segmentation: Improved u-net prostate segmentation (Nowling RJ, Bukowy J, McGarry SD, Nencka AS, Blasko O, Urbain J, Lowman A, Barrington A, Banerjee A, Iczkowski KA, Laviolette PS) 2019 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2019 - Proceedings May 2019 SCOPUS ID: 2-s2.0-85073032385 05/01/2019       9 Citations
  • Cognitive slowing and its underlying neurobiology in temporal lobe epilepsy. (Hwang G, Dabbs K, Conant L, Nair VA, Mathis J, Almane DN, Nencka A, Birn R, Humphries C, Raghavan M, DeYoe EA, Struck AF, Maganti R, Binder JR, Meyerand E, Prabhakaran V, Hermann B) Cortex 2019 Aug;117:41-52 PMID: 30927560 PMCID: PMC6650302 SCOPUS ID: 2-s2.0-85063324806 03/31/2019       35 Citations
  • Image processing and analysis methods for the Adolescent Brain Cognitive Development Study (Donald J Hagler Jr., Sean N. Hatton, Carolina Makowski, M. Daniela Cornejo, Damien A. Fair, Anthony Steven Dick, Matthew T. Sutherland, B.J. Casey, Deanna M. Barch, Michael P. Harms, Richard Watts, James M. Bjork, Hugh P. Garavan, Laura Hilmer, Christopher J. Pung, Chelsea S. Sicat, Joshua Kuperman, Hauke Bartsch, Feng Xue, Mary M. Heitzeg, Angela R. Laird, Thanh T. Trinh, Raul Gonzalez, Susan F. Tapert, Michael C. Riedel, Lindsay M. Squeglia, Luke W. Hyde, Monica D. Rosenberg, Eric A. Earl, Katia D. Howlett, Fiona C. Baker, Mary Soules, Jazmin Diaz, Octavio Ruiz de Leon, Wesley K. Thompson, Michael C. Neale, Megan Herting, Elizabeth R. Sowell, Ruben P. Alvarez, Samuel W. Hawes, Mariana Sanchez, Jerzy Bodurka, Florence J. Breslin, Amanda Sheffield Morris, Martin P. Paulus, W. Kyle Simmons, Jonathan R. Polimeni, Andre van der Kouwe, Andrew S. Nencka, Kevin M. Gray, Carlo Pierpaoli, John A. Matochik, Antonio Noronha, Will M. Aklin, Kevin Conway, Meyer Glantz, Elizabeth Hoffman, Roger Little, Marsha Lopez, Vani Pariyadath, Susan R.B. Weiss, Dana L. Wolff-Hughes, Rebecca DelCarmen-Wiggins, Sarah W. Feldstein Ewing, Oscar Miranda-Dominguez, Bonnie J. Nagel, Anders J. Perrone, Darrick T. Sturgeon, Aimee Goldstone, Adolf Pfefferbaum, Kilian M. Pohl, Devin Prouty, Kristina Uban, Susan Y. Bookheimer, Mirella Dapretto, Adriana Galvan, Kara Bagot, Jay Giedd, M. Alejandra Infante, Joanna Jacobus, Kevin Patrick, Paul D. Shilling, Rahul Desikan, Yi Li, Leo Sugrue, Marie T. Banich, Naomi Friedman, John K. Hewitt, Christian Hopfer, Joseph Sakai, Jody Tanabe, Linda B. Cottler, Sara Jo Nixon, Linda Chang, Christine Cloak, Thomas Ernst, Gloria Reeves, David N. Kennedy, Steve Heeringa, Scott Peltier, John Schulenberg, Chandra Sripada, Robert A. Zucker, William G. Iacono, Monica Luciana, Finnegan J. Calabro, Duncan B. Clark, David A. Lewis, Beatriz Luna, Claudiu Schirda, Tufikameni Brima, John J. Foxe, Edward G. Freedman, Daniel W. Mruzek, Michael J. Mason, Rebekah Huber, Erin McGlade, Andrew Prescot, Perry F. Renshaw, Deborah A. Yurgelun-Todd, Nicholas A Allgaier, Julie A. Dumas, Masha Ivanova, Alexandra Potter, Paul Florsheim, Christine Larson, Krista Lisdahl, Michael E. Charness, Bernard Fuemmeler, John M. Hettema, Joel Steinberg, Andrey P. Anokhin, Paul Glaser, Andrew C. Heath, Pamela A. Madden, Arielle Baskin-Sommers, R. Todd Constable, Steven J. Grant, Gayathri J. Dowling, Sandra A. Brown, Terry L. Jernigan, Anders M. Dale) biorxiv (preprint) https://doi.org/10.1101/457739 03/18/2019    
  • Quantitative Susceptibility Inversion Through Parcellated Multiresolution Neural Networks and K-Space Substitution (Juan Liu, Andrew S. Nencka, L. Tugan Muftuler, Brad Swearingen, Robin Karr, Kevin M. Koch) arXiv.org 03/08/2019    
  • Using Low-Frequency Oscillations to Detect Temporal Lobe Epilepsy with Machine Learning. (Hwang G, Nair VA, Mathis J, Cook CJ, Mohanty R, Zhao G, Tellapragada N, Ustine C, Nwoke OO, Rivera-Bonet C, Rozman M, Allen L, Forseth C, Almane DN, Kraegel P, Nencka A, Felton E, Struck AF, Birn R, Maganti R, Conant LL, Humphries CJ, Hermann B, Raghavan M, DeYoe EA, Binder JR, Meyerand E, Prabhakaran V) Brain Connect 2019 Mar;9(2):184-193 PMID: 30803273 PMCID: PMC6484357 SCOPUS ID: 2-s2.0-85063084464 02/26/2019       14 Citations
  • Build-A-FLAIR: Synthetic T2-FLAIR Contrast Generation through Physics Informed Deep Learning (Andrew S. Nencka, Andrew Klein, Kevin M. Koch, Sean D. McGarry, Peter S. LaViolette, Eric S. Paulson, Nikolai J. Mickevicius, L. Tugan Muftuler, Brad Swearingen, Michael A. McCrea) arxiv.org Nencka AS, Klein A, Koch KM, McGarry SD, LaViolette PS, Paulson ES, Mickevicius NJ, Muftuler LT, Swearingen B, McCrea MA. "Build-A-FLAIR: Synthetic T2 Contrast Generation through Physics Informed Deep Learning." arXiv.org (2019): 1901.04871. 01/15/2019    
  • Prevalence of Potentially Clinically Significant Magnetic Resonance Imaging Findings in Athletes with and without Sport-Related Concussion. (Klein AP, Tetzlaff JE, Bonis JM, Nelson LD, Mayer AR, Huber DL, Harezlak J, Mathews VP, Ulmer JL, Sinson GP, Nencka AS, Koch KM, Wu YC, Saykin AJ, DiFiori JP, Giza CC, Goldman J, Guskiewicz KM, Mihalik JP, Duma SM, Rowson S, Brooks A, Broglio SP, McAllister T, McCrea MA, Meier TB) J Neurotrauma 2019 Jun;36(11):1776-1785 PMID: 30618331 PMCID: PMC6551984 SCOPUS ID: 2-s2.0-85066742597 01/09/2019       33 Citations
  • Resting-state functional connectivity after concussion is associated with clinical recovery. (Kaushal M, España LY, Nencka AS, Wang Y, Nelson LD, McCrea MA, Meier TB) Hum Brain Mapp 2019 Mar;40(4):1211-1220 PMID: 30451340 PMCID: PMC6365215 SCOPUS ID: 2-s2.0-85056732323 11/20/2018       32 Citations
  • Effective Connectivity Within the Default Mode Network in Left Temporal Lobe Epilepsy: Findings from the Epilepsy Connectome Project. (Cook CJ, Hwang G, Mathis J, Nair VA, Conant LL, Allen L, Almane DN, Birn R, DeYoe EA, Felton E, Forseth C, Humphries CJ, Kraegel P, Nencka A, Nwoke O, Raghavan M, Rivera-Bonet C, Rozman M, Tellapragada N, Ustine C, Ward BD, Struck A, Maganti R, Hermann B, Prabhakaran V, Binder JR, Meyerand ME) Brain Connect 2019 Mar;9(2):174-183 PMID: 30398367 PMCID: PMC6444922 SCOPUS ID: 2-s2.0-85063100708 11/07/2018       27 Citations
  • Cerebral blood flow in acute concussion: preliminary ASL findings from the NCAA-DoD CARE consortium. (Wang Y, Nencka AS, Meier TB, Guskiewicz K, Mihalik JP, Alison Brooks M, Saykin AJ, Koch KM, Wu YC, Nelson LD, McAllister TW, Broglio SP, McCrea MA) Brain Imaging Behav 2019 Oct;13(5):1375-1385 PMID: 30159767 PMCID: PMC7232645 SCOPUS ID: 2-s2.0-85053283280 08/31/2018       43 Citations
  • Enhanced BOLD Contrast-to-Noise-Ratio and Activation Sensitivity with the Intra-shot Adapted Keyhole (ISAK) Method (Xu, Zhan Chen, Guangyu Nencka, Andrew Li, Shi-Jiang ) Proc. ISMRM (2018): 5453 06/16/2018    
  • Eye motion artifacts in T2-weighted images, identified by deep neural networks, correlate with concussion (Nencka, Andrew Bukowy, John Karr, Robin Klein, Andrew Koch, Kevin LaViolette, Peter McGarry, Sean Meier, Timothy Swearingen, Brad McCrea, Michael) Proc. ISMRM (2018): 4952 06/16/2018    
  • Gleason Probability Maps: A Radiomics Tool for Mapping Tumor Likelihood in MRI Space (McGarry, Sean Hurrell, Sarah Hohenwalter, Mark Duvnjak, Petar Griffin, Michael Iczkowski, Kenneth Jacobsohn, Kenneth Nencka, Andrew LaViolette, Peter ) Proc. ISMRM (2018): 0715 06/16/2018    
  • Machine Learning in QSM: Inversion Using Multi-Resolution Decomposition and Convolutional Neural Networks (Koch, Kevin Muftuler, Tugan Karr, Robin Nencka, Andrew ) Proc. ISMRM (2018): 2197 06/16/2018    
  • The Medical College of Wisconsin 39 (MCW39): A Magnetic Resonance Image Template of the Prostate to Facilitate Group Analysis (McGarry, Sean Budde, Matthew Hurrell, Sarah Ickzowski, Kenneth Griffin, Michael Duvnjak, Petar Jacobsohn, Kenneth Hall, William Hohenwalter, Mark Nencka, Andrew LaViolette, Peter) Proc. ISMRM (2018): 4499 06/16/2018    
  • Predictive Cytological Topography (PiCT): a Radio-Pathomics Approach to Mapping Prostate Cancer (McGarry, Sean Hurrell, Sarah Iczkowski, Kenneth Kaczmarowski, Amy Banerjee, Anjishnu Keuter, Tucker Jacobsohn, Kenneth Hall, William Nevalainen, Marja Hohenwalter, Mark See, William Nencka, Andrew LaViolette, Peter) Proc. ISMRM (2018): 0775 06/16/2018    
  • The RadPath Surfer: A Radiologic-Pathologic tool for visualizing prostate cancer histology (McGarry, Sean Hurrell, Sarah Jacobsohn, Kenneth Iczkowski, Kenneth Griffin, Michael Duvnjak, Petar Nencka, Andrew Hohenwalter, Mark LaViolette, Peter) Proc. ISMRM (2018): 4387 06/16/2018    
  • Randomized-Slice Simultaneous Multi-Slice for Diffusion Kurtosis Imaging (Olson, Daniel Arpinar, Volkan Emre Nencka, Andrew Muftuler, L. Tugan) Proc. ISMRM (2018): 5331 06/16/2018    
  • Within-Subject Characterization of Sports Concussion with Serial Diffusion MRI and Spherical Mean Technique (Budde, Matthew Muftuler, L. Tugan Nencka, Andrew Koch, Kevin Wang, Yang Meier, Timothy McCrea, Michael) Proc. ISMRM (2018): 4940 06/16/2018    
  • Quantitative Susceptibility Mapping after Sports-Related Concussion. (Koch KM, Meier TB, Karr R, Nencka AS, Muftuler LT, McCrea M) AJNR Am J Neuroradiol 2018 Jul;39(7):1215-1221 PMID: 29880474 PMCID: PMC6055518 SCOPUS ID: 2-s2.0-85049830789 06/09/2018       15 Citations
  • Motion Artifacts in T2-Weighted Images, Localized to Eyes Identified by Deep Neural Networks, Correlate with Concussion (Andrew S. Nencka, John D. Bukowy, Robin A. Karr, Andrew P. Klein, Kevin M. Koch, Peter LaViolette, Sean D. McGarry, Timothy B. Meier, Brad J. Swearingen, Michael McCrea) Proc. ISMRM Machine Learning Workshop (2018): 18 03/14/2018    
  • Deep Learning to Solve the Inverse Problem of Highly Accelerated Projection Imaging (Andrew S. Nencka, L. Tugan Muftuler) Proc. ISMRM Machine Learning Workshop (2018): 54 03/14/2018    
  • Multiband multi-echo simultaneous ASL/BOLD for task-induced functional MRI. (Cohen AD, Nencka AS, Wang Y) PLoS One 2018;13(2):e0190427 PMID: 29389985 PMCID: PMC5794066 SCOPUS ID: 2-s2.0-85041307092 02/02/2018       13 Citations
  • Acute White-Matter Abnormalities in Sports-Related Concussion: A Diffusion Tensor Imaging Study from the NCAA-DoD CARE Consortium. (Mustafi SM, Harezlak J, Koch KM, Nencka AS, Meier TB, West JD, Giza CC, DiFiori JP, Guskiewicz KM, Mihalik JP, LaConte SM, Duma SM, Broglio SP, Saykin AJ, McCrea M, McAllister TW, Wu YC) J Neurotrauma 2018 Nov 15;35(22):2653-2664 PMID: 29065805 PMCID: PMC6238613 SCOPUS ID: 2-s2.0-85053645863 10/27/2017       53 Citations
  • Stability of MRI metrics in the advanced research core of the NCAA-DoD concussion assessment, research and education (CARE) consortium. (Nencka AS, Meier TB, Wang Y, Muftuler LT, Wu YC, Saykin AJ, Harezlak J, Brooks MA, Giza CC, Difiori J, Guskiewicz KM, Mihalik JP, LaConte SM, Duma SM, Broglio S, McAllister T, McCrea MA, Koch KM) Brain Imaging Behav 2018 Aug;12(4):1121-1140 PMID: 29064019 PMCID: PMC6445663 SCOPUS ID: 2-s2.0-85032009818 10/25/2017       21 Citations
  • Functional connectivity density mapping: comparing multiband and conventional EPI protocols. (Cohen AD, Tomasi D, Shokri-Kojori E, Nencka AS, Wang Y) Brain Imaging Behav 2018 Jun;12(3):848-859 PMID: 28676985 SCOPUS ID: 2-s2.0-85021816914 07/06/2017       16 Citations
  • Off-resonance based assessment of metallic wear debris near total hip arthroplasty. (Koch KM, Koff MF, Bauer TW, Shah PH, Nencka AS, Sivaram Kaushik S, Potter HG) Magn Reson Med 2018 Mar;79(3):1628-1637 PMID: 28643347 PMCID: PMC5741538 SCOPUS ID: 2-s2.0-85021256752 06/24/2017       10 Citations
  • Multiband multi-echo imaging of simultaneous oxygenation and flow timeseries for resting state connectivity. (Cohen AD, Nencka AS, Lebel RM, Wang Y) PLoS One 2017;12(3):e0169253 PMID: 28253268 PMCID: PMC5333818 SCOPUS ID: 2-s2.0-85014501585 03/03/2017       17 Citations
  • Radiofrequency pulse design with numerical optimization in the Fourier domain. (Huettner AM, Nencka AS) MAGMA 2016 Jun;29(3):313-7 PMID: 26902919 SCOPUS ID: 2-s2.0-84959146076 02/24/2016       1 Citation
  • Separation of parallel encoded complex-valued slices (SPECS) from a single complex-valued aliased coil image. (Rowe DB, Bruce IP, Nencka AS, Hyde JS, Kociuba MC) Magn Reson Imaging 2016 Apr;34(3):359-69 PMID: 26612076 PMCID: PMC4761326 SCOPUS ID: 2-s2.0-84957937705 11/28/2015       2 Citations
  • Wavelet Domain Radiofrequency Pulse Design Applied to Magnetic Resonance Imaging. (Huettner AM, Mickevicius NJ, Ersoz A, Koch KM, Muftuler LT, Nencka AS) PLoS One 2015;10(10):e0141151 PMID: 26517262 PMCID: PMC4627821 SCOPUS ID: 2-s2.0-84950326643 10/31/2015       4 Citations
  • Cerebral Blood Flow Alterations in Acute Sport-Related Concussion. (Wang Y, Nelson LD, LaRoche AA, Pfaller AY, Nencka AS, Koch KM, McCrea MA) J Neurotrauma 2016 Jul 01;33(13):1227-36 PMID: 26414315 PMCID: PMC4931342 SCOPUS ID: 2-s2.0-84975770260 09/29/2015       134 Citations
  • Restoring susceptibility induced MRI signal loss in rat brain at 9.4 T: A step towards whole brain functional connectivity imaging. (Li R, Liu X, Sidabras JW, Paulson ES, Jesmanowicz A, Nencka AS, Hudetz AG, Hyde JS) PLoS One 2015;10(4):e0119450 PMID: 25844644 PMCID: PMC4386820 SCOPUS ID: 2-s2.0-84926645905 04/07/2015       13 Citations
  • Personal reflections on James S. Hyde. (Biswal B, Pawela C, Grist T, Meyerand ME, Nencka AS, DeYoe EA, Li SJ, Rowe DB, Kiviniemi V, Cox RW, Bodurka J, Ogawa S, Koretsky A, Hu X, Kim SG) Brain Connect 2014 Nov;4(9):631-5 PMID: 25415836 PMCID: PMC4238237 SCOPUS ID: 2-s2.0-84937197534 11/22/2014    
  • Quantification of the statistical effects of spatiotemporal processing of nontask FMRI data. (Karaman M, Nencka AS, Bruce IP, Rowe DB) Brain Connect 2014 Nov;4(9):649-61 PMID: 25132113 PMCID: PMC4238310 SCOPUS ID: 2-s2.0-84927911115 08/19/2014       7 Citations
  • Direct radiofrequency phase control in MRI by digital waveform playback at the Larmor frequency. (Jesmanowicz A, Nencka A, Hyde JS) Magn Reson Med 2014 Feb;71(2):846-52 PMID: 23468035 PMCID: PMC4002655 SCOPUS ID: 2-s2.0-84892444461 03/08/2013       3 Citations
  • Functional connectivity of the cortical swallowing network in humans. (Babaei A, Ward BD, Siwiec RM, Ahmad S, Kern M, Nencka A, Li SJ, Shaker R) Neuroimage 2013 Aug 01;76:33-44 PMID: 23416253 PMCID: PMC4130480 SCOPUS ID: 2-s2.0-84876304378 02/19/2013       33 Citations
  • Hemodynamics of the rat aortic arch (Molony DS, Nencka A, Li Z, Zhao M, Giddens DP) ASME 2012 Summer Bioengineering Conference, SBC 2012 2012:1271-1272 SCOPUS ID: 2-s2.0-84882706129 12/01/2012    
  • Reproducibility of swallow-induced cortical BOLD positive and negative fMRI activity. (Babaei A, Ward BD, Ahmad S, Patel A, Nencka A, Li SJ, Hyde J, Shaker R) Am J Physiol Gastrointest Liver Physiol 2012 Sep 01;303(5):G600-9 PMID: 22766854 PMCID: PMC3468557 SCOPUS ID: 2-s2.0-84865753007 07/07/2012       17 Citations
  • Enhancing the utility of complex-valued functional magnetic resonance imaging detection of neurobiological processes through postacquisition estimation and correction of dynamic B(0) errors and motion. (Hahn AD, Nencka AS, Rowe DB) Hum Brain Mapp 2012 Feb;33(2):288-306 PMID: 21305669 PMCID: PMC4001883 SCOPUS ID: 2-s2.0-84855939756 02/10/2011       9 Citations
  • Two-axis acceleration of functional connectivity magnetic resonance imaging by parallel excitation of phase-tagged slices and half k-space acceleration. (Jesmanowicz A, Nencka AS, Li SJ, Hyde JS) Brain Connect 2011;1(1):81-90 PMID: 22432957 PMCID: PMC3312804 SCOPUS ID: 2-s2.0-85006186246 01/01/2011       13 Citations
  • A simple method for rectified noise floor suppression: Phase-corrected real data reconstruction with application to diffusion-weighted imaging. (Prah DE, Paulson ES, Nencka AS, Schmainda KM) Magn Reson Med 2010 Aug;64(2):418-29 PMID: 20665786 PMCID: PMC4321728 SCOPUS ID: 2-s2.0-77955111675 07/29/2010       31 Citations
  • Functional magnetic resonance imaging brain activation directly from k-space. (Rowe DB, Hahn AD, Nencka AS) Magn Reson Imaging 2009 Dec;27(10):1370-81 PMID: 19608365 PMCID: PMC2783194 SCOPUS ID: 2-s2.0-70449530580 07/18/2009       2 Citations
  • A Mathematical Model for Understanding the STatistical effects of k-space (AMMUST-k) preprocessing on observed voxel measurements in fcMRI and fMRI. (Nencka AS, Hahn AD, Rowe DB) J Neurosci Methods 2009 Jul 30;181(2):268-82 PMID: 19463854 PMCID: PMC2990679 SCOPUS ID: 2-s2.0-67649086216 05/26/2009       8 Citations
  • Improving robustness and reliability of phase-sensitive fMRI analysis using temporal off-resonance alignment of single-echo timeseries (TOAST). (Hahn AD, Nencka AS, Rowe DB) Neuroimage 2009 Feb 01;44(3):742-52 PMID: 18992826 PMCID: PMC2884970 SCOPUS ID: 2-s2.0-57649213868 11/11/2008       28 Citations
  • Reducing the unwanted draining vein BOLD contribution in fMRI with statistical post-processing methods. (Nencka AS, Rowe DB) Neuroimage 2007 Aug 01;37(1):177-88 PMID: 17560130 SCOPUS ID: 2-s2.0-34447562908 06/15/2007       39 Citations
  • Signal and noise of Fourier reconstructed fMRI data. (Rowe DB, Nencka AS, Hoffmann RG) J Neurosci Methods 2007 Jan 30;159(2):361-9 PMID: 16945421 PMCID: PMC4089039 SCOPUS ID: 2-s2.0-33845400355 09/02/2006       18 Citations
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